View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8048_low_16 (Length: 263)
Name: NF8048_low_16
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 252
Target Start/End: Complemental strand, 55249265 - 55249031
Alignment:
| Q |
17 |
aaaaccagttgctgttagcaggactatgtactgtaaattattcccatggtatgatattatggggtaattcatgctgtttgatcttcggtttaagaatttc |
116 |
Q |
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| T |
55249265 |
aaaaccagttgctgttagcaggactatgtactgtaaattattcccatggtatgatattatggggtaattcatgctgtttgatcttcggtttaagaatttc |
55249166 |
T |
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| Q |
117 |
tgattaaccggaggatattcaaatgaaactaaccatttgaatgtatatgtatggattaaaaattatccatgagatccaatacctctgggttatctgtcca |
216 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
55249165 |
tgattaac-ggaggatattcaaatgaaactaaccatttgaatgtatatgtatggattaaaaattaaccatgagatccaatacctctgggttatctgtcca |
55249067 |
T |
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| Q |
217 |
atgtgagattccttttaagagtagaggcgtgtgtgc |
252 |
Q |
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|||||||||||||||||||||||||||| ||||||| |
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| T |
55249066 |
atgtgagattccttttaagagtagaggcatgtgtgc |
55249031 |
T |
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