View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8048_low_17 (Length: 259)
Name: NF8048_low_17
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_low_17 |
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Alignment Details
Target: chr8 (Bit Score: 216; Significance: 1e-119; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 35819566 - 35819805
Alignment:
| Q |
1 |
tgtggtgaccacttggtaccagagcaatcccgtcgtgcacacttgatgtcggagcatttgctggtactggagataacgatggtccatgatgttcttggtg |
100 |
Q |
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| T |
35819566 |
tgtggtgaccacttgataccagagcaatcccgtcgtgcacacctgatgttggagcatttgctggtactggagataacgatggtccatgatgttcttggtg |
35819665 |
T |
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| Q |
101 |
ggacaaaaccacaaggctcaacttttcaccctttacgcaatgtttaacatttccactgatgaagtaaaagtgtcctggtttgtccaacaaaaatgttgaa |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
35819666 |
ggacaaaaccacaaggctcaacttttcaccctttacgcaatgtttaacatttccactgatgaagtaaaagtgtcccggtttgtccaacaaaaatgttgaa |
35819765 |
T |
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| Q |
201 |
tctccaccatgcatcttacgaattgggtttgtaacattgc |
240 |
Q |
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| T |
35819766 |
tctccaccatgcatcttacgaattgggttcgtaacgttgc |
35819805 |
T |
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Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 102 - 187
Target Start/End: Original strand, 38711362 - 38711447
Alignment:
| Q |
102 |
gacaaaaccacaaggctcaacttttcaccctttacgcaatgtttaacatttccactgatgaagtaaaagtgtcctggtttgtccaa |
187 |
Q |
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|||||||| ||||| ||||||||| ||||||| |||| | ||| ||||||||||||||||||||| | |||| ||||||||| |
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| T |
38711362 |
gacaaaacaacaagatgcaacttttcgccctttagacaatttgaaacttttccactgatgaagtaaaagggacctgatttgtccaa |
38711447 |
T |
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