View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8048_low_2 (Length: 864)

Name: NF8048_low_2
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8048_low_2
NF8048_low_2
[»] chr3 (5 HSPs)
chr3 (288-846)||(44478993-44479552)
chr3 (118-243)||(44479600-44479725)
chr3 (44-114)||(44479801-44479869)
chr3 (113-171)||(44479711-44479769)
chr3 (111-156)||(44479648-44479693)
[»] chr5 (5 HSPs)
chr5 (288-846)||(21974626-21975185)
chr5 (118-243)||(21974453-21974578)
chr5 (44-114)||(21974309-21974377)
chr5 (113-171)||(21974409-21974467)
chr5 (111-156)||(21974485-21974530)
[»] scaffold0018 (4 HSPs)
scaffold0018 (288-663)||(75651-76026)
scaffold0018 (387-663)||(76028-76304)
scaffold0018 (387-663)||(76306-76582)
scaffold0018 (35-243)||(75384-75603)
[»] chr8 (2 HSPs)
chr8 (490-633)||(41770387-41770530)
chr8 (704-750)||(41770601-41770647)
[»] chr4 (2 HSPs)
chr4 (490-633)||(35599648-35599791)
chr4 (704-750)||(35599531-35599577)
[»] chr7 (5 HSPs)
chr7 (490-633)||(47736192-47736335)
chr7 (491-625)||(37876506-37876640)
chr7 (770-834)||(47735991-47736055)
chr7 (521-612)||(34796502-34796593)
chr7 (704-750)||(47736075-47736121)
[»] chr2 (2 HSPs)
chr2 (490-633)||(13648859-13649002)
chr2 (704-750)||(13649073-13649119)
[»] chr1 (2 HSPs)
chr1 (28-114)||(32620165-32620249)
chr1 (521-612)||(51017102-51017193)
[»] chr6 (1 HSPs)
chr6 (491-612)||(22369914-22370035)


Alignment Details
Target: chr3 (Bit Score: 435; Significance: 0; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 435; E-Value: 0
Query Start/End: Original strand, 288 - 846
Target Start/End: Complemental strand, 44479552 - 44478993
Alignment:
Q  288 caaattttaaagtaatatagttacaaataaactgacaagaaatat-gatcaatattttgacagcagtaaaatacctttcttttttgtgcttcagggttca 386  Q
    |||||| ||||  |||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  44479552 caaattataaatcaatatagttagagataaactgacaagaaatattgatcaatattttgacagaagtaaaatacctttcttttttgtgcttctgggttca 44479453  T
Q  387 ctgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccacatgtttttgc 486  Q
     |||||||| ||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  44479452 ttgtctgacttttgcaacctctagcattgtgaccacaactcccacatcttgtgcacttgtacttactagcacctctgctaaatttcccacatgattttgc 44479353  T
Q  487 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacata 586  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  44479352 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttgatgtacacaggaggaagcatctcctcacattcaacttcaggccacata 44479253  T
Q  587 tcttgaccatttatggcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacatagccctctgggttttgatccatct 686  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  44479252 tcttgaccatttatagcactcacattgaagttataacatgcttcatacttgctcctagtataccattcagaaacatagccctctgggttttggtctgtct 44479153  T
Q  687 tagacattgcaacaatagcatgtctgcaaggtatacctacaagctcccaaaaattacaactacaagnnnnnnncctcatgtccacagtaaatctctgccc 786  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       || ||||||||||||||||||||||||    
T  44479152 tagacattgcaacaatagcatgtctgcaaggtatacctactagctcccaaaaattacaactacaagttcttttccccatgtccacagtaaatctctgccc 44479053  T
Q  787 accaccaatcatttcaacctcaaactcctcatcatttccccaagttgcaatccaattacc 846  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  44479052 accaccaatcatttcaacctcaaactcctcaccatttccccaagttgcaatccaattacc 44478993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 118 - 243
Target Start/End: Complemental strand, 44479725 - 44479600
Alignment:
Q  118 tttgaactggattagtcccctcactttgacttgcttgagtttgaactggattggtctcctcaatttcacttgcttgagcactttgggtttcatgttgagc 217  Q
    ||||||||||||| | |||  ||||||||||| ||| |||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||    
T  44479725 tttgaactggattggcccctccactttgacttacttcagtttgaactggattggtctccccactttgacttgcttgagcactttgtgtttcatgttgagc 44479626  T
Q  218 agactgttcttgagagacttgagcac 243  Q
    ||||||||||||||||||||||||||    
T  44479625 agactgttcttgagagacttgagcac 44479600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 44 - 114
Target Start/End: Complemental strand, 44479869 - 44479801
Alignment:
Q  44 agtagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttgaactttaccaactt 114  Q
    ||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||    
T  44479869 agtagcatataataaacaaattagtag--catataataaacaatttaccttcctttgaactttatcaactt 44479801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 44479769 - 44479711
Alignment:
Q  113 ttgagtttgaactggattagtcccctcactttgacttgcttgagtttgaactggattgg 171  Q
    |||||| |||| |||||| | |||| ||||||||||||||| | |||||||||||||||    
T  44479769 ttgagtctgaattggattggcccccccactttgacttgcttcaatttgaactggattgg 44479711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Complemental strand, 44479693 - 44479648
Alignment:
Q  111 acttgagtttgaactggattagtcccctcactttgacttgcttgag 156  Q
    |||| ||||||||||||||| ||| || ||||||||||||||||||    
T  44479693 acttcagtttgaactggattggtctccccactttgacttgcttgag 44479648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 431; Significance: 0; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 431; E-Value: 0
Query Start/End: Original strand, 288 - 846
Target Start/End: Original strand, 21974626 - 21975185
Alignment:
Q  288 caaattttaaagtaatatagttacaaataaactgacaagaaatat-gatcaatattttgacagcagtaaaatacctttcttttttgtgcttcagggttca 386  Q
    |||||| ||||  |||||||||| | ||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||| |||||||    
T  21974626 caaattataaatcaatatagttagagataaactgacaagaaatattgatcaatattttgacagaagtaaaatacctttcttttttgtgcttctgggttca 21974725  T
Q  387 ctgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccacatgtttttgc 486  Q
     |||||||| ||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21974726 ttgtctgacttttgcaacctctagcattgtgaccacaactcccacatcttgtgcacttgtacttactagcacctctgctaaatttcccacatgattttgc 21974825  T
Q  487 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacata 586  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||    
T  21974826 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttgatgtacacaggaggaagcatctcctcacattcaacttcaggccacata 21974925  T
Q  587 tcttgaccatttatggcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacatagccctctgggttttgatccatct 686  Q
    |||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||  |||    
T  21974926 tcttgaccatttatagcactcacattgaagttataacatgcttcatacttgctcctagtataccattcagaaacatagccctctgggttttggtctgtct 21975025  T
Q  687 tagacattgcaacaatagcatgtctgcaaggtatacctacaagctcccaaaaattacaactacaagnnnnnnncctcatgtccacagtaaatctctgccc 786  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||       || ||||| ||||||||||||||||||    
T  21975026 tagacattgcaacaatagcatgtctgcaaggtatacctactagctcccaaaaattacaactacaagttcttttccccatgttcacagtaaatctctgccc 21975125  T
Q  787 accaccaatcatttcaacctcaaactcctcatcatttccccaagttgcaatccaattacc 846  Q
    ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21975126 accaccaatcatttcaacctcaaactcctcaccatttccccaagttgcaatccaattacc 21975185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 86; E-Value: 1e-40
Query Start/End: Original strand, 118 - 243
Target Start/End: Original strand, 21974453 - 21974578
Alignment:
Q  118 tttgaactggattagtcccctcactttgacttgcttgagtttgaactggattggtctcctcaatttcacttgcttgagcactttgggtttcatgttgagc 217  Q
    ||||||||||||| | |||  ||||||||||| ||| |||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||    
T  21974453 tttgaactggattggcccctccactttgacttacttcagtttgaactggattggtctccccactttgacttgcttgagcactttgtgtttcatgttgagc 21974552  T
Q  218 agactgttcttgagagacttgagcac 243  Q
    ||||||||||||||||||||||||||    
T  21974553 agactgttcttgagagacttgagcac 21974578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 6e-18
Query Start/End: Original strand, 44 - 114
Target Start/End: Original strand, 21974309 - 21974377
Alignment:
Q  44 agtagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttgaactttaccaactt 114  Q
    ||||||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||    
T  21974309 agtagcatataataaacaaattagtag--catataataaacaatttaccttcctttgaactttatcaactt 21974377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 113 - 171
Target Start/End: Original strand, 21974409 - 21974467
Alignment:
Q  113 ttgagtttgaactggattagtcccctcactttgacttgcttgagtttgaactggattgg 171  Q
    |||||| |||| |||||| | |||| ||||||||||||||| | |||||||||||||||    
T  21974409 ttgagtctgaattggattggcccccccactttgacttgcttcaatttgaactggattgg 21974467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 111 - 156
Target Start/End: Original strand, 21974485 - 21974530
Alignment:
Q  111 acttgagtttgaactggattagtcccctcactttgacttgcttgag 156  Q
    |||| ||||||||||||||| ||| || ||||||||||||||||||    
T  21974485 acttcagtttgaactggattggtctccccactttgacttgcttgag 21974530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 312; Significance: 1e-175; HSPs: 4)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 312; E-Value: 1e-175
Query Start/End: Original strand, 288 - 663
Target Start/End: Original strand, 75651 - 76026
Alignment:
Q  288 caaattttaaagtaatatagttacaaataaactgacaagaaatatgatcaatattttgacagcagtaaaatacctttcttttttgtgcttcagggttcac 387  Q
    |||||| ||||  |||||||||| | |||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||    
T  75651 caaattataaatcaatatagttagagataaactgacaagaaatatgatcaatattttgacagaagtaaaatacctttctcttttgtgcttcagggttcac 75750  T
Q  388 tgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccacatgtttttgct 487  Q
    |||||||| ||| |||||||| ||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  75751 tgtctgacttttgcaacctctggcattgtgaccacaactcccacatgttgtgcacttgtacttactagcacctctgctaaatttcccacatgattttgct 75850  T
Q  488 ggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatat 587  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  75851 ggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacaaaggaggaagcatctcctcacatttaacttcaggccacatat 75950  T
Q  588 cttgaccatttatggcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacata 663  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  75951 cttgaccatttatagcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacata 76026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #2
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 387 - 663
Target Start/End: Original strand, 76028 - 76304
Alignment:
Q  387 ctgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccacatgtttttgc 486  Q
    ||||||||| ||| ||||||||  ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  76028 ctgtctgacttttgcaacctctgccattgtgaccacagctcccacatgttgtgcacttgtacttactagcacctctgctaaatttcccacatgattttgc 76127  T
Q  487 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacata 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  76128 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacaaaggaggaagcatctcctcacatttaacttcaggccacata 76227  T
Q  587 tcttgaccatttatggcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacata 663  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  76228 tcttgaccatttatagcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacata 76304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #3
Raw Score: 233; E-Value: 1e-128
Query Start/End: Original strand, 387 - 663
Target Start/End: Original strand, 76306 - 76582
Alignment:
Q  387 ctgtctgacatttacaacctcttgcattgtgaccacaacttccacattttgtgcacttgtacttactagcacctctgctaaatttcccacatgtttttgc 486  Q
    ||||||||| ||| ||||||||  ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  76306 ctgtctgacttttgcaacctctgccattgtgaccacagctcccacatgttgtgcacttgtacttactagcacctctgctaaatttcccacatgattttgc 76405  T
Q  487 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacata 586  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||    
T  76406 tggctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacaaaggaggaagcatctcctcacatttaacttcaggccacata 76505  T
Q  587 tcttgaccatttatggcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacata 663  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  76506 tcttgaccatttatagcactcacattaaagttataacatgcttcatacttgctcctagtataccattcagaaacata 76582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018; HSP #4
Raw Score: 93; E-Value: 8e-45
Query Start/End: Original strand, 35 - 243
Target Start/End: Original strand, 75384 - 75603
Alignment:
Q  35 aagcaatttagt-agcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttga-----------acttt-accaacttgagtttg 121  Q
    |||||||||||| |||||||||| |||||||||||||  ||| |||||||||||||||||||||||||           ||||| ||    |||||| ||    
T  75384 aagcaatttagttagcatataataaacaaattagtag--catataataaacaatttaccttcctttgattagttcctccactttgacttgtttgagtctg 75481  T
Q  122 aactggattagtcccctcactttgacttgcttgagtttgaactggattggtctcctcaatttcacttgcttgagcactttgggtttcatgttgagcagac 221  Q
    |||||||||   |||| ||||||||||||||| |||||||||||||||||||||| || ||| |||||||||||||||||| ||||||||||||||||||    
T  75482 aactggattgacccccccactttgacttgcttcagtttgaactggattggtctccccactttgacttgcttgagcactttgtgtttcatgttgagcagac 75581  T
Q  222 tgttcttgagagacttgagcac 243  Q
    ||||||||||||||||||||||    
T  75582 tgttcttgagagacttgagcac 75603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 490 - 633
Target Start/End: Original strand, 41770387 - 41770530
Alignment:
Q  490 ctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatct 589  Q
    |||| ||||||| |||||||| || ||||| ||||| || || ||||| || || |  || |||||||||||||||||||| || |||||||||||||||    
T  41770387 ctcaccaggctccctcctcctcagcttctttggtctcccaggcccttttttataaattggtggaagcatctcctcacattccacctcaggccacatatct 41770486  T
Q  590 tgaccatttatggcactcacattaaagttataacatgcttcata 633  Q
    || ||||| |||||||||||||||  ||| ||||||||||||||    
T  41770487 tgcccattaatggcactcacattatggttgtaacatgcttcata 41770530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 704 - 750
Target Start/End: Original strand, 41770601 - 41770647
Alignment:
Q  704 gcatgtctgcaaggtatacctacaagctcccaaaaattacaactaca 750  Q
    ||||| || |||||||||||||| | |||||||||||||||||||||    
T  41770601 gcatgcctacaaggtatacctaccaactcccaaaaattacaactaca 41770647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 60; Significance: 4e-25; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 60; E-Value: 4e-25
Query Start/End: Original strand, 490 - 633
Target Start/End: Complemental strand, 35599791 - 35599648
Alignment:
Q  490 ctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatct 589  Q
    |||| ||||||| |||||||| || ||||| ||||| || || ||||| || || |  || |||||||||||||||||||| || |||||||||||||||    
T  35599791 ctcaccaggctccctcctcctcagcttctttggtctcccaggcccttttttataaattggtggaagcatctcctcacattccacctcaggccacatatct 35599692  T
Q  590 tgaccatttatggcactcacattaaagttataacatgcttcata 633  Q
    || ||||| |||||||||||||||  ||| ||||||||||||||    
T  35599691 tgcccattaatggcactcacattatggttgtaacatgcttcata 35599648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 704 - 750
Target Start/End: Complemental strand, 35599577 - 35599531
Alignment:
Q  704 gcatgtctgcaaggtatacctacaagctcccaaaaattacaactaca 750  Q
    ||||| || |||||||||||||| | |||||||||||||||||||||    
T  35599577 gcatgcctacaaggtatacctaccaactcccaaaaattacaactaca 35599531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 52; Significance: 2e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 490 - 633
Target Start/End: Complemental strand, 47736335 - 47736192
Alignment:
Q  490 ctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatct 589  Q
    |||| ||||||| |||||||| || ||||| ||||| || || ||||| || ||    || |||||||||||||||||||| || |||||||||||||||    
T  47736335 ctcaccaggctccctcctcctaagcttctttggtctcccaggcccttttttataagttggtggaagcatctcctcacattccacctcaggccacatatct 47736236  T
Q  590 tgaccatttatggcactcacattaaagttataacatgcttcata 633  Q
    || ||||| |||||||||||||||  ||| | ||||||||||||    
T  47736235 tgtccattaatggcactcacattatggttgttacatgcttcata 47736192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 491 - 625
Target Start/End: Complemental strand, 37876640 - 37876506
Alignment:
Q  491 tcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatctt 590  Q
    |||||||| || ||||| ||||| ||||| ||||||||||| |||||||||||    ||||||||||| || ||   |||||| |  |||||||| ||||    
T  37876640 tcatcaggttccctccttcttagcttctttggtcttcctggacctttcttgtaggttggaggaagcatatcttccacttcaacatttggccacatgtctt 37876541  T
Q  591 gaccatttatggcactcacattaaagttataacat 625  Q
    | ||||| || ||||| ||||||||| ||||||||    
T  37876540 gtccattgattgcactaacattaaagctataacat 37876506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 770 - 834
Target Start/End: Complemental strand, 47736055 - 47735991
Alignment:
Q  770 acagtaaatctctgcccaccaccaatcatttcaacctcaaactcctcatcatttccccaagttgc 834  Q
    ||||||||||| || |||||||| | |||||||||||||||||| ||| |  |||||||||||||    
T  47736055 acagtaaatctatgtccaccacccaccatttcaacctcaaactcatcacctattccccaagttgc 47735991  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 612
Target Start/End: Original strand, 34796502 - 34796593
Alignment:
Q  521 ggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatcttgaccatttatggcactcacatt 612  Q
    ||||||||||| || || || ||  ||||||| | || ||||||||||||||| || |||||||| ||||||||||| || ||||| |||||    
T  34796502 ggtcttcctggaccctttttataagcaggaggtaacaactcctcacattcaacctctggccacatgtcttgaccattgatagcacttacatt 34796593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 704 - 750
Target Start/End: Complemental strand, 47736121 - 47736075
Alignment:
Q  704 gcatgtctgcaaggtatacctacaagctcccaaaaattacaactaca 750  Q
    ||||| || |||||||||||||| | |||||||||||||||||||||    
T  47736121 gcatgcctacaaggtatacctaccaactcccaaaaattacaactaca 47736075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 490 - 633
Target Start/End: Original strand, 13648859 - 13649002
Alignment:
Q  490 ctcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatct 589  Q
    |||| ||||||| |||||||| || ||||| ||||| || || ||||| || ||    || |||||||||||||||||||| || |||||||||||||||    
T  13648859 ctcaccaggctccctcctcctaagcttctttggtctcccaggcccttttttataagttggtggaagcatctcctcacattccacctcaggccacatatct 13648958  T
Q  590 tgaccatttatggcactcacattaaagttataacatgcttcata 633  Q
    || ||||| |||||||||||||||  ||| | ||||||||||||    
T  13648959 tgtccattaatggcactcacattatggttgttacatgcttcata 13649002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 704 - 750
Target Start/End: Original strand, 13649073 - 13649119
Alignment:
Q  704 gcatgtctgcaaggtatacctacaagctcccaaaaattacaactaca 750  Q
    ||||| || |||||||||||||| | |||||||||||||||||||||    
T  13649073 gcatgcctacaaggtatacctaccaactcccaaaaattacaactaca 13649119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 2e-20; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 28 - 114
Target Start/End: Complemental strand, 32620249 - 32620165
Alignment:
Q  28 atataataagcaatttagtagcatataatgaacaaattagtagagcatctaataaacaatttaccttcctttgaactttaccaactt 114  Q
    ||||||||| ||| ||||| ||||||||| |||||||||||||  ||| ||||||||||||||||||||||||||||||| ||||||    
T  32620249 atataataaacaaattagttgcatataataaacaaattagtag--catataataaacaatttaccttcctttgaactttatcaactt 32620165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 521 - 612
Target Start/End: Complemental strand, 51017193 - 51017102
Alignment:
Q  521 ggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatcttgaccatttatggcactcacatt 612  Q
    ||||||||||| || || || ||  ||||||| | || ||||||||||||||| || |||||||| ||||||||||| || ||||| |||||    
T  51017193 ggtcttcctggaccctttttataagcaggaggtaacaactcctcacattcaacctctggccacatgtcttgaccattgatagcacttacatt 51017102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 491 - 612
Target Start/End: Original strand, 22369914 - 22370035
Alignment:
Q  491 tcatcaggctctctcctccttagtttcttaggtcttcctggtcctttcttgtacacaggaggaagcatctcctcacattcaacttcaggccacatatctt 590  Q
    |||||||| ||||| || || || || || |||||||||||| | ||||| ||  ||||||| | ||| || |||||||| || || |||||||| ||||    
T  22369914 tcatcaggttctcttcttctaagcttttttggtcttcctggtgccttcttataagcaggaggtaacatttcttcacattctacctctggccacatgtctt 22370013  T
Q  591 gaccatttatggcactcacatt 612  Q
    ||||||| || |||||||||||    
T  22370014 gaccattgatagcactcacatt 22370035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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