View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8048_low_22 (Length: 250)
Name: NF8048_low_22
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_low_22 |
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| [»] chr3 (7 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 231; Significance: 1e-127; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 8 - 250
Target Start/End: Complemental strand, 30719305 - 30719063
Alignment:
| Q |
8 |
cgaagaatattcgaaagtgatgactactaacttggattctgcatatcatctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcatt |
107 |
Q |
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| T |
30719305 |
cgaagattattcgaaagtgatgactactaacttggattctgcatatcatctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcatt |
30719206 |
T |
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| Q |
108 |
gtgttcatttcctctgttgggtctctgacaagcgtaggtactggaagcatctatgcagcaagtaaaggtaatttggaaatggaagcattatgttatcttt |
207 |
Q |
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| T |
30719205 |
gttttcatttcctctgttgggtctctgacaagcgtaggtactggaagcatctatgcagcgagtaaaggtaatttggaaatggaagcattatgttatcttt |
30719106 |
T |
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| Q |
208 |
aaccttttgttgaaatataatggatacaaactaaaagatttat |
250 |
Q |
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| T |
30719105 |
aaccttttgttgaaatataatggatacaaactaaaagatttat |
30719063 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 8 - 178
Target Start/End: Complemental strand, 30706322 - 30706152
Alignment:
| Q |
8 |
cgaagaatattcgaaagtgatgactactaacttggattctgcatatcatctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcatt |
107 |
Q |
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| T |
30706322 |
cgaagattattcaaaagtgatgactactaacttggattctgcataccatctatgtcaactagcatatcctcttcttaaagaatctggaaatggaagcatt |
30706223 |
T |
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| Q |
108 |
gtgttcatttcctctgttgggtctctgacaagcgtaggtactggaagcatctatgcagcaagtaaaggtaa |
178 |
Q |
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| T |
30706222 |
gtgttcatttcctctgttgcatctctaataagtgtaggtactggaagcatctatgcagtgagtaaaggtaa |
30706152 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 30699486 - 30699317
Alignment:
| Q |
9 |
gaagaatattcgaaagtgatgactactaacttggattctgcatatcatctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcattg |
108 |
Q |
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| T |
30699486 |
gaagattattcaaaattgatgactattaacttggattctgcataccatctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcattg |
30699387 |
T |
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| Q |
109 |
tgttcatttcctctgttgggtctctgacaagcgtaggtactggaagcatctatgcagcaagtaaaggtaa |
178 |
Q |
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| T |
30699386 |
tattcaattcctctgttgcatctctgacacacgtaggttctggaacgatatacgcagcatgtaaaggtaa |
30699317 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 8 - 163
Target Start/End: Complemental strand, 30708962 - 30708804
Alignment:
| Q |
8 |
cgaagaatattcgaaagtgatgactactaacttggattctgcatatcatctatgccaactgacatatcctcttcttaaagaatctggaaatg---gaagc |
104 |
Q |
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| T |
30708962 |
cgaagattactcaaaagtgatgattactaacttggattctgcataccatctatgccaactgacatatcctcttcttaaagaatctggaaatgcaagaagc |
30708863 |
T |
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| Q |
105 |
attgtgttcatttcctctgttgggtctctgacaagcgtaggtactggaagcatctatgc |
163 |
Q |
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| T |
30708862 |
attgtattcaattcctccgttgcatctctaacaagcataggttctggaaccatatatgc |
30708804 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 54 - 126
Target Start/End: Original strand, 30790307 - 30790379
Alignment:
| Q |
54 |
catctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttg |
126 |
Q |
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| T |
30790307 |
catctgtgccaactttcacatcctcttctaaaagaatctggaaatggtagcattgtgttcatttcatctgttg |
30790379 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 42 - 122
Target Start/End: Original strand, 30798652 - 30798732
Alignment:
| Q |
42 |
gattctgcatatcatctatgccaactgacatatcctcttcttaaagaatctggaaatggaagcattgtgttcatttcctct |
122 |
Q |
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| T |
30798652 |
gattctgcatatcatttgtgtcaacttacacatcctcttctaaaggcatatggaatgggaagcattgtattcatttcctct |
30798732 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 45 - 122
Target Start/End: Complemental strand, 30868512 - 30868436
Alignment:
| Q |
45 |
tctgcatatcatctatgccaactgacatatcctcttcttaaaga-atctggaaatggaagcattgtgttcatttcctct |
122 |
Q |
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| T |
30868512 |
tctgcatatcatttgtgccaacttaca-atcctcttct-aaagacatctggaatgggaagcattgtattcatttcctct |
30868436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 121
Target Start/End: Original strand, 23081116 - 23081162
Alignment:
| Q |
75 |
cctcttcttaaagaatctggaaatggaagcattgtgttcatttcctc |
121 |
Q |
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| T |
23081116 |
cctcttctaaaacaatctggaaatggaagcattgtattcatatcctc |
23081162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 127
Target Start/End: Original strand, 23057856 - 23057905
Alignment:
| Q |
78 |
cttcttaaagaatctggaaatggaagcattgtgttcatttcctctgttgg |
127 |
Q |
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| T |
23057856 |
cttctaaaagaatctggatatggaagcatagtgttcatatcttctgttgg |
23057905 |
T |
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