View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8048_low_23 (Length: 240)
Name: NF8048_low_23
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_low_23 |
 | |
|
| [»] chr3 (3 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 168; Significance: 4e-90; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 168; E-Value: 4e-90
Query Start/End: Original strand, 19 - 240
Target Start/End: Original strand, 30718806 - 30719026
Alignment:
| Q |
19 |
acacctccgattaaacaacgaccaatcagtcatttcatccaaatcaaatgaacattacaaattcaaacaatcttcatnnnnnnnnnnntgacaaagccac |
118 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
30718806 |
acacctccgattaaacaatgaccaatcagtcatttcatacaaatcaaatgatcattacaaattcaaacaatcttcataaaaaaaaaa-tgacaaagccac |
30718904 |
T |
|
| Q |
119 |
agaatgaataattgaaggtgtgaaagagcattacatgttccacaagtggtgtttttgtataccagggtgcgacacagttgctcctgatgttgtctttcgc |
218 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
30718905 |
agaatgaataattgaaggtgtgaaagagcattacatgttccacaagtggtgtttttgtataccagggtgcgacacagttgctccttatgttgtctttcgc |
30719004 |
T |
|
| Q |
219 |
ccattcacaagcaagacttttt |
240 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
30719005 |
ccattcacaagcaagacttttt |
30719026 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 141 - 234
Target Start/End: Original strand, 30705936 - 30706029
Alignment:
| Q |
141 |
aaagagcattacatgttccacaagtggtgtttttgtataccagggtgcgacacagttgctcctgatgttgtctttcgcccattcacaagcaaga |
234 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||||||| ||||| |||||||||||||| || |||||||| |||||||||||||||||| |
|
|
| T |
30705936 |
aaagagcattacctgttccacaagcgatgtttttgtataccacggtgcaacacagttgctccttatattgtcttttgcccattcacaagcaaga |
30706029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 166 - 235
Target Start/End: Original strand, 30699120 - 30699189
Alignment:
| Q |
166 |
ggtgtttttgtataccagggtgcgacacagttgctcctgatgttgtctttcgcccattcacaagcaagac |
235 |
Q |
| |
|
||||||||||||||||| || ||||| || ||| |||| || |||||||| ||||||||||||||||||| |
|
|
| T |
30699120 |
ggtgtttttgtataccaaggcgcgacgcaattgatccttatattgtcttttgcccattcacaagcaagac |
30699189 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University