View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8048_low_24 (Length: 240)
Name: NF8048_low_24
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_low_24 |
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Alignment Details
Target: chr7 (Bit Score: 185; Significance: 1e-100; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 39 - 223
Target Start/End: Complemental strand, 37937272 - 37937088
Alignment:
| Q |
39 |
cactaatggagcttagcaaagtaacactagagatattcacaaaactagaacaacaatggctatcagtttcacaatgtggaacaacatccaaaactcgcat |
138 |
Q |
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| T |
37937272 |
cactaatggagcttagcaaagtaacactagagatattcacaaaactagaacaacaatggctatcagtttcacaatgtggaacaacatccaaaactcgcat |
37937173 |
T |
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| Q |
139 |
tctcagcattgacggcggaggaaccaccgccattgtctccggcgctgccttgatccaccttgaggatcagatccgcttacaaacc |
223 |
Q |
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| T |
37937172 |
tctcagcattgacggcggaggaaccaccgccattgtctccggcgctgccttgatccaccttgaggatcagatccgcttacaaacc |
37937088 |
T |
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Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 126 - 213
Target Start/End: Original strand, 32039723 - 32039810
Alignment:
| Q |
126 |
ccaaaactcgcattctcagcattgacggcggaggaaccaccgccattgtctccggcgctgccttgatccaccttgaggatcagatccg |
213 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||| || ||||| || || ||||||||||| |
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| T |
32039723 |
ccaaaactcgcattctcagcattgacggcggaggaacaaccgccattgtagccggcgctgctttaatccatctcgaagatcagatccg |
32039810 |
T |
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