View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8048_low_25 (Length: 238)

Name: NF8048_low_25
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8048_low_25
NF8048_low_25
[»] chr4 (4 HSPs)
chr4 (13-222)||(35368278-35368500)
chr4 (87-151)||(35369188-35369252)
chr4 (110-185)||(46300522-46300597)
chr4 (71-106)||(16499122-16499157)
[»] chr3 (8 HSPs)
chr3 (71-168)||(32998942-32999039)
chr3 (71-142)||(33006194-33006265)
chr3 (72-184)||(49283619-49283731)
chr3 (72-118)||(11884909-11884955)
chr3 (78-151)||(52960165-52960238)
chr3 (98-159)||(52960871-52960931)
chr3 (97-185)||(49284401-49284489)
chr3 (71-107)||(49976893-49976929)
[»] chr1 (4 HSPs)
chr1 (73-183)||(51489071-51489181)
chr1 (75-175)||(51488794-51488894)
chr1 (74-106)||(51720740-51720772)
chr1 (71-107)||(36424335-36424371)
[»] chr8 (8 HSPs)
chr8 (72-151)||(37355003-37355082)
chr8 (71-151)||(4698240-4698320)
chr8 (71-119)||(13544556-13544604)
chr8 (71-119)||(13679869-13679917)
chr8 (75-146)||(37354198-37354267)
chr8 (71-119)||(13545189-13545237)
chr8 (71-119)||(13679236-13679284)
chr8 (72-108)||(21120087-21120123)
[»] chr2 (4 HSPs)
chr2 (69-151)||(17768418-17768500)
chr2 (71-148)||(25331924-25332001)
chr2 (71-118)||(39384857-39384904)
chr2 (71-151)||(25332361-25332440)
[»] chr5 (4 HSPs)
chr5 (71-151)||(41696922-41697002)
chr5 (72-119)||(40601405-40601452)
chr5 (83-150)||(41696091-41696158)
chr5 (69-119)||(40600735-40600785)
[»] scaffold0187 (4 HSPs)
scaffold0187 (71-149)||(10549-10627)
scaffold0187 (75-149)||(10964-11038)
scaffold0187 (71-149)||(20877-20955)
scaffold0187 (75-149)||(21292-21366)
[»] scaffold0220 (1 HSPs)
scaffold0220 (71-118)||(20609-20656)
[»] scaffold0421 (1 HSPs)
scaffold0421 (71-108)||(7285-7322)
[»] chr6 (1 HSPs)
chr6 (71-108)||(33771446-33771483)


Alignment Details
Target: chr4 (Bit Score: 122; Significance: 1e-62; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 13 - 222
Target Start/End: Original strand, 35368278 - 35368500
Alignment:
Q  13 cacgtttacctgtctaaactagaaaaacacatataactttgttgtcattttaatattactagggtcacacccactaacactctcttttaacacaccaaat 112  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||||||    
T  35368278 cacgtttacccgtctaaactagaaaaacacatataactttgttgtcattttaatattactagggtcacatccactgacactttcttttaacacaccaaat 35368377  T
Q  113 aaaaattgaacatg-------------tgtcacactcttttatttcaattaatatgtaacctattcaacgtgtttctaaacattttgannnnnnnaataa 199  Q
    ||||||||||||||             ||||||||| |||||||| |||||| |||||||||||| ||| ||||||||||||||||||       |||||    
T  35368378 aaaaattgaacatgtgtcacatttatctgtcacacttttttattttaattaacatgtaacctattgaacctgtttctaaacattttgatttttttaataa 35368477  T
Q  200 tttaatttaaaagaagaggtagt 222  Q
    |||||||||||||||||||||||    
T  35368478 tttaatttaaaagaagaggtagt 35368500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 151
Target Start/End: Complemental strand, 35369252 - 35369188
Alignment:
Q  87 taacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaa 151  Q
    ||||||||||||||| ||||| |||||||||||| |||||||||||| |||||||||||||||||    
T  35369252 taacactctcttttatcacacaaaataaaaattggacatgtgtcacaatcttttatttcaattaa 35369188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 110 - 185
Target Start/End: Complemental strand, 46300597 - 46300522
Alignment:
Q  110 aataaaaattgaacatgtgtcacactcttttatttcaattaatatgtaacctattcaacgtgtttctaaacatttt 185  Q
    ||||| ||||| ||||||||| |||| |||||||||||||||  ||||||||  ||||| ||||||||||||||||    
T  46300597 aataagaattggacatgtgtctcacttttttatttcaattaacctgtaacctgatcaacatgtttctaaacatttt 46300522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 106
Target Start/End: Original strand, 16499122 - 16499157
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacaca 106  Q
    ||||||||||||||||||||||||||||||||||||    
T  16499122 ctagggtcacacccactaacactctcttttaacaca 16499157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 74; Significance: 4e-34; HSPs: 8)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 71 - 168
Target Start/End: Original strand, 32998942 - 32999039
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaatatgtaacctattcaac 168  Q
    |||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |  |||||||| ||||||    
T  32998942 ctagggtcacacccactagcactctcttttaacacaccaaataaaaattggacatgtgtcacactcttttatttcaattgaactgtaacctgttcaac 32999039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 71 - 142
Target Start/End: Complemental strand, 33006265 - 33006194
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttat 142  Q
    ||||||||||||||||||  |||||||| ||||||||||||||||||||| |||||||||||||||||||||    
T  33006265 ctagggtcacacccactagaactctcttataacacaccaaataaaaattggacatgtgtcacactcttttat 33006194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 72 - 184
Target Start/End: Original strand, 49283619 - 49283731
Alignment:
Q  72 tagggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaatatgtaacctattcaacgtg 171  Q
    ||||||||||  ||||||||||||||||||||||||| ||||||||||   ||| |||   ||| ||||| |||||||||  ||  |||||||||||  |    
T  49283619 tagggtcacattcactaacactctcttttaacacacccaataaaaattagtcatatgttctacttttttaattcaattaacttgatacctattcaactgg 49283718  T
Q  172 tttctaaacattt 184  Q
    |||||||||||||    
T  49283719 tttctaaacattt 49283731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 72 - 118
Target Start/End: Original strand, 11884909 - 11884955
Alignment:
Q  72 tagggtcacacccactaacactctcttttaacacaccaaataaaaat 118  Q
    |||||||||||||||||||||||| ||||||||| || |||||||||    
T  11884909 tagggtcacacccactaacactctattttaacacgcccaataaaaat 11884955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 78 - 151
Target Start/End: Original strand, 52960165 - 52960238
Alignment:
Q  78 cacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaa 151  Q
    ||||||||  ||||||||||||||| ||||| ||||| |||||  |||||||| |||| |||||||| ||||||    
T  52960165 cacacccatgaacactctcttttaaaacacccaataataattggccatgtgtcccacttttttattttaattaa 52960238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 98 - 159
Target Start/End: Complemental strand, 52960931 - 52960871
Alignment:
Q  98 tttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaatatgtaac 159  Q
    ||||||||||  ||||| ||||| ||||||||| |||| ||||||||||||||| |||||||    
T  52960931 tttaacacactgaataagaattggacatgtgtctcact-ttttatttcaattaacatgtaac 52960871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 185
Target Start/End: Complemental strand, 49284489 - 49284401
Alignment:
Q  97 ttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaatatgtaacctattcaacgtgtttctaaacatttt 185  Q
    |||||||||||| |||||||||| |  ||||||  |||| ||||| |||||||||  || ||| | ||||||  |||||||||||||||    
T  49284489 ttttaacacacccaataaaaattaacaatgtgttccacttttttaattcaattaacctgaaacttgttcaactggtttctaaacatttt 49284401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 49976893 - 49976929
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacac 107  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  49976893 ctagtgtcacacccactaacacactcttttaacacac 49976929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 67; Significance: 7e-30; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 73 - 183
Target Start/End: Complemental strand, 51489181 - 51489071
Alignment:
Q  73 agggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaatatgtaacctattcaacgtgt 172  Q
    ||||||||||| |||||| ||||||||||||||| |||||||||||||| |||||||| || | |||||||||||||||| || |||||||||||| |||    
T  51489181 agggtcacacctactaaccctctcttttaacacatcaaataaaaattgatcatgtgtcccatttttttatttcaattaatctgaaacctattcaacctgt 51489082  T
Q  173 ttctaaacatt 183  Q
    ||| |||||||    
T  51489081 ttccaaacatt 51489071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 75 - 175
Target Start/End: Original strand, 51488794 - 51488894
Alignment:
Q  75 ggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaatatgtaacctattcaacgtgttt 174  Q
    |||||| || |||||||||||||||||||||| | |||||||||||| |||||||  |||| ||| |||||||||||  || ||||| |||||| |||||    
T  51488794 ggtcactcctactaacactctcttttaacacatccaataaaaattgaccatgtgttccactttttaatttcaattaacctggaacctgttcaacctgttt 51488893  T
Q  175 c 175  Q
    |    
T  51488894 c 51488894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 74 - 106
Target Start/End: Complemental strand, 51720772 - 51720740
Alignment:
Q  74 gggtcacacccactaacactctcttttaacaca 106  Q
    |||||||||||||||||||||||||||||||||    
T  51720772 gggtcacacccactaacactctcttttaacaca 51720740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 71 - 107
Target Start/End: Original strand, 36424335 - 36424371
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacac 107  Q
    |||||||||||||| |||||||||||||| |||||||    
T  36424335 ctagggtcacaccctctaacactctctttaaacacac 36424371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 72 - 151
Target Start/End: Complemental strand, 37355082 - 37355003
Alignment:
Q  72 tagggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaa 151  Q
    |||||||||| |||||||||||||||||||||||||||||| ||||||  ||||||||| || | |||||||||||||||    
T  37355082 tagggtcacatccactaacactctcttttaacacaccaaatcaaaattagacatgtgtcccatttttttatttcaattaa 37355003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 4698320 - 4698240
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaa 151  Q
    ||||||||||||  ||||| | |||||||||||||||| |||||||||||| ||||||||  ||| ||| |||||||||||    
T  4698320 ctagggtcacacagactaatattctcttttaacacacccaataaaaattgaccatgtgtcctactttttaatttcaattaa 4698240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 13544556 - 13544604
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaatt 119  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  13544556 ctaggctcacacccactaacactctcttttaacacacccaataaaaatt 13544604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 13679917 - 13679869
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaatt 119  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||    
T  13679917 ctaggctcacacccactaacactctcttttaacacacccaataaaaatt 13679869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 146
Target Start/End: Original strand, 37354198 - 37354267
Alignment:
Q  75 ggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttca 146  Q
    |||||||| ||||||||||||||| ||  ||||||||| ||||||| ||||||||| |||| ||||||||||    
T  37354198 ggtcacactcactaacactctcttcta--acaccaaatcaaaattggacatgtgtcccacttttttatttca 37354267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Complemental strand, 13545237 - 13545189
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaatt 119  Q
    |||| |||||||||||| |||||||||||||||||||| ||||| ||||    
T  13545237 ctagagtcacacccacttacactctcttttaacacacccaataataatt 13545189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 71 - 119
Target Start/End: Original strand, 13679236 - 13679284
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaatt 119  Q
    |||| |||||||||||| |||||||||||||||||||| ||||| ||||    
T  13679236 ctagagtcacacccacttacactctcttttaacacacccaataataatt 13679284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 108
Target Start/End: Original strand, 21120087 - 21120123
Alignment:
Q  72 tagggtcacacccactaacactctcttttaacacacc 108  Q
    |||||||||||||||||||||||| ||| ||||||||    
T  21120087 tagggtcacacccactaacactctttttcaacacacc 21120123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 51; Significance: 2e-20; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 69 - 151
Target Start/End: Original strand, 17768418 - 17768500
Alignment:
Q  69 tactagggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaa 151  Q
    ||||||||| ||| |||||||||||||||||||||||||||||||| | ||| |||| ||| ||||| |||||||||||||||    
T  17768418 tactagggtgacatccactaacactctcttttaacacaccaaataagagttggacatatgtgacacttttttatttcaattaa 17768500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 71 - 148
Target Start/End: Original strand, 25331924 - 25332001
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaat 148  Q
    ||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||| || |||| |||| |||||||    
T  25331924 ctagggtcacacccactaacactctcttttagcacacccaataaaaattggacatgtatcccacttttttgtttcaat 25332001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 39384904 - 39384857
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaat 118  Q
    ||||||||| |||||||||||||||||||||||||||| |||||||||    
T  39384904 ctagggtcatacccactaacactctcttttaacacacctaataaaaat 39384857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 25332440 - 25332361
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaa 151  Q
    ||||| |||||||||| |||||||||||||||||||| |||||| |||    |||||||| |||| |||||||||||||||    
T  25332440 ctaggatcacacccacgaacactctcttttaacacactaaataagaatctggcatgtgtctcact-ttttatttcaattaa 25332361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 49; Significance: 4e-19; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 71 - 151
Target Start/End: Complemental strand, 41697002 - 41696922
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaattaa 151  Q
    |||||| ||||||||||||||||||||| ||||||||||||| | |||||||||||| |  |||| |||||||||||||||    
T  41697002 ctagggccacacccactaacactctcttctaacacaccaaatcagaattgaacatgtattccacttttttatttcaattaa 41696922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 72 - 119
Target Start/End: Complemental strand, 40601452 - 40601405
Alignment:
Q  72 tagggtcacacccactaacactctcttttaacacaccaaataaaaatt 119  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||||    
T  40601452 tagggtcacacccactaacactctcttttaacacacccaataaaaatt 40601405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 83 - 150
Target Start/End: Original strand, 41696091 - 41696158
Alignment:
Q  83 ccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaatta 150  Q
    |||||||||||||||||||||||||||||| | ||||| ||||||||| || | ||||||||||||||    
T  41696091 ccactaacactctcttttaacacaccaaatcagaattggacatgtgtcccatttttttatttcaatta 41696158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 69 - 119
Target Start/End: Original strand, 40600735 - 40600785
Alignment:
Q  69 tactagggtcacacccactaacactctcttttaacacaccaaataaaaatt 119  Q
    ||||||| |||||||||||||||||||||||||||||| | ||||||||||    
T  40600735 tactaggatcacacccactaacactctcttttaacacatccaataaaaatt 40600785  T

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Target: scaffold0187 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 4)
Name: scaffold0187
Description:

Target: scaffold0187; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 10549 - 10627
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaatt 149  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||   |||||||| || | ||||| |||||||    
T  10549 ctagggtcacactcactaacactctcttttaacacacccaataaaaattagccatgtgtcccatttttttaattcaatt 10627  T

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Target: scaffold0187; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 11038 - 10964
Alignment:
Q  75 ggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaatt 149  Q
    |||||||||||||||||||||||||||||||| | |||||||||| | |||||||| || | ||||| |||||||    
T  11038 ggtcacacccactaacactctcttttaacacatccaataaaaattaaccatgtgtctcatttttttaattcaatt 10964  T

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Target: scaffold0187; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 71 - 149
Target Start/End: Original strand, 20877 - 20955
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaatt 149  Q
    |||||||||||| ||||||||||||||||||||||||| ||||||||||   |||||||| || | ||||| |||||||    
T  20877 ctagggtcacactcactaacactctcttttaacacacccaataaaaattagccatgtgtcccatttttttaattcaatt 20955  T

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Target: scaffold0187; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 75 - 149
Target Start/End: Complemental strand, 21366 - 21292
Alignment:
Q  75 ggtcacacccactaacactctcttttaacacaccaaataaaaattgaacatgtgtcacactcttttatttcaatt 149  Q
    |||||||||||||||||||||||||||||||| | |||||||||| | |||||||| || | ||||| |||||||    
T  21366 ggtcacacccactaacactctcttttaacacatccaataaaaattaaccatgtgtctcatttttttaattcaatt 21292  T

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Target: scaffold0220 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 71 - 118
Target Start/End: Complemental strand, 20656 - 20609
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacaccaaataaaaat 118  Q
    |||||||| ||||||||||||||||||||||||||||| |||||||||    
T  20656 ctagggtcccacccactaacactctcttttaacacacccaataaaaat 20609  T

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Target: scaffold0421 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0421
Description:

Target: scaffold0421; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 7322 - 7285
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacacc 108  Q
    ||||||||||| ||||||||||||||||||||||||||    
T  7322 ctagggtcacatccactaacactctcttttaacacacc 7285  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 71 - 108
Target Start/End: Complemental strand, 33771483 - 33771446
Alignment:
Q  71 ctagggtcacacccactaacactctcttttaacacacc 108  Q
    |||||||||||||||||||||| |||||||||||||||    
T  33771483 ctagggtcacacccactaacacactcttttaacacacc 33771446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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