View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8048_low_3 (Length: 723)
Name: NF8048_low_3
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 449; Significance: 0; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 469
Target Start/End: Complemental strand, 52262767 - 52262300
Alignment:
| Q |
1 |
aaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaacaggttttcgagaaatcggatttgtttaagagaattgtgaagggag |
100 |
Q |
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| T |
52262767 |
aaagggattttcactaacgtgtgtattggttggcctggttcttattctgatgaataggttttcgagaaatcggatttgtttaagagaattgtgaagggag |
52262668 |
T |
|
| Q |
101 |
atttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgcagcacgc |
200 |
Q |
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| T |
52262667 |
atttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgcagcacgc |
52262568 |
T |
|
| Q |
201 |
gtttaatgagagggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaaa |
300 |
Q |
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| T |
52262567 |
gtttaatgagaaggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcaaaagaggacagaggtgaaa |
52262468 |
T |
|
| Q |
301 |
attgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgagatgagaaatgagaagatggatcctggatggaattttgaattgt |
400 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
52262467 |
attgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgagatgagaaatgagaagatggat-ctggatggaattttgaattgt |
52262369 |
T |
|
| Q |
401 |
ttgatgatgaaatggtggctgagaatggtgcgagatctgttgctgctgttcaagctagggataatattg |
469 |
Q |
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| T |
52262368 |
ttgatgatgaaatggtggctgagaatggtgcgagatctgttgctgctgttcaagctagggataatattg |
52262300 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 101 - 538
Target Start/End: Complemental strand, 52251025 - 52250584
Alignment:
| Q |
101 |
atttgaaagatgcttgggttgctggaaattctgggtaccctttaatggatgaaattttggttccttatgcacataagaatcttacttggacgcagcacgc |
200 |
Q |
| |
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||||||||||| ||||||||| |||||||||||||| |||||| ||||||| |||||||||||||||| ||||| |||||||||||||||| |||||||| |
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| T |
52251025 |
atttgaaagattcttgggttgttggaaattctgggttccctttgatggatggaattttggttccttatacacatcagaatcttacttggacacagcacgc |
52250926 |
T |
|
| Q |
201 |
gtttaatgagagggttgaggatattcagaggattgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaaa |
300 |
Q |
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| T |
52250925 |
gtttaatgagaaagtggaagatattcagaagctgagtaaggatgcgtttgcaaaggtgaaaggaaggtggtcttgtttgcagaagaggatagaggtgaag |
52250826 |
T |
|
| Q |
301 |
attgaggatttgcctaagattttaggtgcttgttgtgttttgcataatatttgtgagatgagaaatgagaagatggatcctggatggaattttgaattgt |
400 |
Q |
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| T |
52250825 |
attgaggagttgcctggtgttcttggtgcttgttgtgttttgcataatatttgtgaaatgaggaatgagaagatggatcctgcatggaattttgaacttt |
52250726 |
T |
|
| Q |
401 |
ttgatgatgaaatggtggctgagaatggtgcgagatctgttgctgctgttcaagctagggataatattgctcatgacttgttgcatcgtggccgtgctgg |
500 |
Q |
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| T |
52250725 |
ttgatgatgaaatggttgctgagaatggtgtgaaatctgttgctgctgctcaagctagggataatattgctcatgatttgttgcatcgtggtcgtgttgg |
52250626 |
T |
|
| Q |
501 |
caatacttttctatagg----tttatgttttctgttatgtca |
538 |
Q |
| |
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|||||||||| |||| | ||||||||||||||||||||| |
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| T |
52250625 |
caatacttttttataagtttttttatgttttctgttatgtca |
52250584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 95; E-Value: 4e-46
Query Start/End: Original strand, 525 - 623
Target Start/End: Complemental strand, 52262277 - 52262179
Alignment:
| Q |
525 |
tttctgttatgtcaaatgatttcaatattttagctatgacttattactagtcattcatattagagaagaacaagactatattgtgtggatctattgtta |
623 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
52262277 |
tttctattatgtcaaatgatttcaatattttagctatgacttattactagtcattcatattagagaagaacaagactatattgtgtggatctattgtta |
52262179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 666 - 723
Target Start/End: Complemental strand, 52262173 - 52262116
Alignment:
| Q |
666 |
tagtttatttgatggagacatcagtttacaagggcgcggatttgaactcacgactttc |
723 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
52262173 |
tagtttatttgatggagacatctgtttacaagggcgcggatttgaactcacgactttc |
52262116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 50; Significance: 3e-19; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 233 - 382
Target Start/End: Original strand, 3698843 - 3698992
Alignment:
| Q |
233 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaaaattgaggatttgcctaagattttaggtgcttg |
332 |
Q |
| |
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||||||||||||||||||| || ||||||| |||||||| ||||||||||| ||||| || ||||| | | ||||||||| | | |||||||| |
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| T |
3698843 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagctacaagatttgcctgttgtacttggtgcttg |
3698942 |
T |
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| Q |
333 |
ttgtgttttgcataatatttgtgagatgagaaatgagaagatggatcctg |
382 |
Q |
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||||||||||||||| ||||||||||||| | |||||| |||||||||| |
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| T |
3698943 |
ttgtgttttgcataacatttgtgagatgaaaggtgagaaaatggatcctg |
3698992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 233 - 382
Target Start/End: Original strand, 3702531 - 3702680
Alignment:
| Q |
233 |
ttgctaaagatgcatttgcaaggctgaaagggaggtggtcctgtttgcagaagaggacagaggtgaaaattgaggatttgcctaa-gattttaggtgctt |
331 |
Q |
| |
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||||||||||||||||||| || ||||||| |||||||| ||||||||||| ||||| || ||||| || | ||||||||| || || | ||||| |
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| T |
3702531 |
ttgctaaagatgcatttgctagattgaaaggtaggtggtcttgtttgcagaaaaggactgaagtgaagcttcaagatttgcctgttgaactttg-tgctt |
3702629 |
T |
|
| Q |
332 |
gttgtgttttgcataatatttgtgagatgagaaatgagaagatggatcctg |
382 |
Q |
| |
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|||||||||||||||| ||||||||||||| | |||||| |||||||||| |
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| T |
3702630 |
gttgtgttttgcataacatttgtgagatgaaaggtgagaaaatggatcctg |
3702680 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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