View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8048_low_5 (Length: 507)
Name: NF8048_low_5
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 20 - 490
Target Start/End: Complemental strand, 49297991 - 49297521
Alignment:
| Q |
20 |
taatatcacctttcattactgcattgaagttacacaaacttttctctttaacttccaatctcttcatgcttaccaaaatataaagttctaatacggagca |
119 |
Q |
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| T |
49297991 |
taatatcacctttcattactgcattgaagttacacaaacttttctctttaacttccaatctcttcatgcttaccaaaatataaagttctaatacggagca |
49297892 |
T |
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| Q |
120 |
atctgctagcaatgaagatataacaaaaaagtcattagtttctacatgaagaccaacgggagagaatataaaatgcgatgcnnnnnnnnncttcttccag |
219 |
Q |
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| T |
49297891 |
atctgctagcaatgaagatataacaaaaaagtcattagtttctacatgaagaccaacgggagagaatataaaatgcgatgctttttttttcttcttccag |
49297792 |
T |
|
| Q |
220 |
gtttgcttcaactaaagaatacggcaatgttttgtagacagaaacgtgactttaaaatcctttgtatcacagtcaataagtctttatcagagttcaagaa |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297791 |
gtttgcttcaactaaagaatacggcaatgttttgtagacagaaacgtgactttaaaatcctttgtatcacagtcaataagtctttatcagagttcaagaa |
49297692 |
T |
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| Q |
320 |
cccataaaataattattacccaggaatatcctctcacatgctacagcagttttctctcccttaacacatgggttatatggaaaaactagagtatatggtg |
419 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297691 |
cccataaaataattattacccaggaatatcctctcacatgctacagcagttttctctcccttaacacatgggttatatggaaaaactagagtatatggtg |
49297592 |
T |
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| Q |
420 |
tcggacaaacacactttcaaaattgttgttagttactttagtaattattatcttcgtcaattactattgat |
490 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49297591 |
tcggacaaacacactttcaaaattgttgttagttactttagtaattattatcttcgtcaattactattgat |
49297521 |
T |
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