View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8048_low_6 (Length: 506)
Name: NF8048_low_6
Description: NF8048
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8048_low_6 |
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Alignment Details
Target: chr5 (Bit Score: 444; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 37189310 - 37188835
Alignment:
| Q |
17 |
cacaattgagttgaaattaatcaattacaactcttggtttttgtgtcctcctgaagnnnnnnnntgaattaattacattcttaacatagagaccaaacag |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
37189310 |
cacaattgagttgaaattaatcaattacaactcttggtttttgtgtcctcctcaagaaaaaaaatgaattaattacattcttaacatagagaccaaacag |
37189211 |
T |
|
| Q |
117 |
caagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgt |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189210 |
caagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctgt |
37189111 |
T |
|
| Q |
217 |
cttgaaaccatttccatagtcaatgacttttttggtatacttttgatgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttacc |
316 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189110 |
cttgaaaccatttccatagtcaatgacttttttcgtatacttttgatgcaactttgttattcacatcatcaatatcttcttttaattcctcagctttacc |
37189011 |
T |
|
| Q |
317 |
ttttcccttcctttgagacacttcttcaatttctttgtttggttcttgatgtactacttgttttttctgatcagaaacttgaggagcagtgtttggtttc |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37189010 |
ttttcccttcctttgagacacttcttcaatttctttgtttggttcttgatgtactacttgttttttctgatcagaaacttgaggagcagtgtttggtttc |
37188911 |
T |
|
| Q |
417 |
tgaggaattgttgctggttgctgaggcttttgaggttcttgttgtgttattggtttggttggtgttggaactatat |
492 |
Q |
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| T |
37188910 |
tgaggaattgttgctggttgctgaggcttttgaggttcttgttgtgttattggtttggttggtgttggaactatat |
37188835 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 17 - 492
Target Start/End: Complemental strand, 37894210 - 37893737
Alignment:
| Q |
17 |
cacaattgagttgaaattaatcaa-ttacaactcttggtttttgtgtcctcctgaagnnnnnnnntgaattaattacattcttaacatagagaccaaaca |
115 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
37894210 |
cacaattgagttgtaattaatcaaattacaactcttggtttttgtgtcctcctgaa----aaaaatgaattaattacattcttaacatagagaccaaaca |
37894115 |
T |
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| Q |
116 |
gcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctg |
215 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37894114 |
gcaagaccaaaaacacaagcaccaacaaattaaccagcttcttctgcttcttaacttcatcaaccaaaccacataatgcattcacatattcttgtctctg |
37894015 |
T |
|
| Q |
216 |
tcttgaaaccatttccatagtcaatgacttttttg--gtatacttttgatgcaactttgttattcacatcatcaatatcttcttttaattcctcagcttt |
313 |
Q |
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|||||||||||||||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37894014 |
tcttgaaaccatttccatagtcaatgactttttttcagca-acttttgatgcaactttgttattcacatcatcaatatcttcttttaattcctcagcttt |
37893916 |
T |
|
| Q |
314 |
accttttcccttcctttgagacacttcttcaatttctttgtttggttcttgatgtactacttgttttttctgatcagaaacttgaggagcagtgtttggt |
413 |
Q |
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||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37893915 |
accttttcccttcctttgagacacttcttcaatttctttctttggttcttgttgcactacttgttttttctgatcagaaacttgaggagcagtgtttggt |
37893816 |
T |
|
| Q |
414 |
ttctgaggaattgttgctggttgctgaggcttttgaggttcttgttgtgttattggtttggttggtgttggaactatat |
492 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
37893815 |
ttctgaggaattgttgctggttgctgaggcttttgaggttcttgttgtgttgttggtttggttggtgttggaactatat |
37893737 |
T |
|
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