View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8049_high_1 (Length: 312)

Name: NF8049_high_1
Description: NF8049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8049_high_1
NF8049_high_1
[»] chr8 (14 HSPs)
chr8 (1-297)||(25494451-25494747)
chr8 (101-252)||(25677873-25678024)
chr8 (101-252)||(25617131-25617278)
chr8 (1-98)||(25677518-25677614)
chr8 (161-252)||(25391309-25391400)
chr8 (16-98)||(25358169-25358251)
chr8 (173-252)||(25358290-25358369)
chr8 (16-98)||(25391210-25391292)
chr8 (41-98)||(25650330-25650387)
chr8 (253-297)||(25391585-25391629)
chr8 (254-296)||(25358555-25358597)
chr8 (253-297)||(25678209-25678253)
chr8 (253-297)||(25617467-25617511)
chr8 (57-98)||(25616613-25616654)
[»] scaffold0466 (2 HSPs)
scaffold0466 (183-252)||(8427-8499)
scaffold0466 (258-297)||(8191-8230)
[»] scaffold1041 (1 HSPs)
scaffold1041 (253-297)||(1115-1159)


Alignment Details
Target: chr8 (Bit Score: 297; Significance: 1e-167; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 297; E-Value: 1e-167
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 25494451 - 25494747
Alignment:
Q  1 ccatcaaagacatctaaaggcaccgaagccaaaggcacataatcctctcccgtccttatattatcaatcaactcatacacctctctttgaactacacctc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494451 ccatcaaagacatctaaaggcaccgaagccaaaggcacataatcctctcccgtccttatattatcaatcaactcatacacctctctttgaactacacctc 25494550  T
Q  101 tcattgattgtgatatgagaacgtggcaacggtaatgtgaggaaattcttccattatgtcgccacttgcaccatatatatagaagacgtatggaaacatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494551 tcattgattgtgatatgagaacgtggcaacggtaatgtgaggaaattcttccattatgtcgccacttgcaccatatatatagaagacgtatggaaacatt 25494650  T
Q  201 cgggagcagataagttgtcaaaaatcaagttcatcattttatattctattctgaaatctatttcctattaatatttccaacagtaatatattgtttc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25494651 cgggagcagataagttgtcaaaaatcaagttcatcattttatattctattctgaaatctatttcctattaatatttccaacagtaatatattgtttc 25494747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 136; E-Value: 6e-71
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 25677873 - 25678024
Alignment:
Q  101 tcattgattgtgatatgagaacgtggcaacggtaatgtgaggaaattcttccattatgtcgccacttgcaccatatatatagaagacgtatggaaacatt 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||    
T  25677873 tcattgattgtgatatgagaacgtggcaacggtaatgtgaggaaattcttccattatgtggtcacttgcaccatatatatagaagacgtatggaaacatt 25677972  T
Q  201 cgggagcagataagttgtcaaaaatcaagttcatcattttatattctattct 252  Q
     ||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  25677973 ggggagcagataagttgtcaaaaatcaagttcattattttatattctattct 25678024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 101 - 252
Target Start/End: Original strand, 25617131 - 25617278
Alignment:
Q  101 tcattgattgtgatatgagaacgtggcaacggtaatgtgaggaaattcttccattatgtcgccacttgcaccatatatatagaagacgtatggaaacatt 200  Q
    ||||||||||||||||||||| ||||||||||||||||| ||||||||||||| | ||| |||||   ||  ||||||||| |||||||| ||||||| |    
T  25617131 tcattgattgtgatatgagaaggtggcaacggtaatgtgtggaaattcttccagtgtgtggccac---cat-atatatataaaagacgtacggaaacaat 25617226  T
Q  201 cgggagcagataagttgtcaaaaatcaagttcatcattttatattctattct 252  Q
     ||||||||||||||||||||||||||||||||| |||||||||| ||||||    
T  25617227 ggggagcagataagttgtcaaaaatcaagttcattattttatattttattct 25617278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 98
Target Start/End: Original strand, 25677518 - 25677614
Alignment:
Q  1 ccatcaaagacatctaaaggcaccgaagccaaaggcacataatcctctcccgtccttatattatcaatcaactcatacacctctctttgaactacacc 98  Q
    |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||    
T  25677518 ccatcaaagacatctaaaggcaccgaagccaa-ggcacataatcctctcctgtccttatattatcaatcaactcatacacctctatttgaactacacc 25677614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 161 - 252
Target Start/End: Original strand, 25391309 - 25391400
Alignment:
Q  161 gccacttgcaccatatatatagaagacgtatggaaacattcgggagcagataagttgtcaaaaatcaagttcatcattttatattctattct 252  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||  ||||||||||||||||    
T  25391309 gccacttgcaccatatatatagaagacgtatggaaacattggggagcagataagttgtcaaaaatcaagttcattgttttatattctattct 25391400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 25358169 - 25358251
Alignment:
Q  16 aaaggcaccgaagccaaaggcacataatcctctcccgtccttatattatcaatcaactcatacacctctctttgaactacacc 98  Q
    ||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  25358169 aaaggcacctaaaccaaagacacataatcctctcccgtccttatattatcaatcaactcatccacctctctttgaactacacc 25358251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 173 - 252
Target Start/End: Original strand, 25358290 - 25358369
Alignment:
Q  173 atatatatagaagacgtatggaaacattcgggagcagataagttgtcaaaaatcaagttcatcattttatattctattct 252  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||  ||||||||||||||||    
T  25358290 atatatatagaagacgtatggaaacattggggatcagataagttgtcaaaaatcaagttcattgttttatattctattct 25358369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 16 - 98
Target Start/End: Original strand, 25391210 - 25391292
Alignment:
Q  16 aaaggcaccgaagccaaaggcacataatcctctcccgtccttatattatcaatcaactcatacacctctctttgaactacacc 98  Q
    ||||||||| || |||||| |||||||||||||||| |||||||||||||||||||||||| ||| |||||||||||||||||    
T  25391210 aaaggcacctaaaccaaagacacataatcctctcccatccttatattatcaatcaactcatccacttctctttgaactacacc 25391292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 41 - 98
Target Start/End: Original strand, 25650330 - 25650387
Alignment:
Q  41 aatcctctcccgtccttatattatcaatcaactcatacacctctctttgaactacacc 98  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25650330 aatcctctcccgtccttatattatcaatcaactcatacacctctctttgaactacacc 25650387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 25391585 - 25391629
Alignment:
Q  253 gaaatctatttcctattaatatttccaacagtaatatattgtttc 297  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  25391585 gaaatctatttcctattaatatttccaacagtaatatattgtttc 25391629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 254 - 296
Target Start/End: Original strand, 25358555 - 25358597
Alignment:
Q  254 aaatctatttcctattaatatttccaacagtaatatattgttt 296  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  25358555 aaatctatttcctattaatatttccaacagtaatatattgttt 25358597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 25678209 - 25678253
Alignment:
Q  253 gaaatctatttcctattaatatttccaacagtaatatattgtttc 297  Q
    ||||||||||||||||||||||||||||||||||||| |||||||    
T  25678209 gaaatctatttcctattaatatttccaacagtaatatcttgtttc 25678253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Original strand, 25617467 - 25617511
Alignment:
Q  253 gaaatctatttcctattaatatttccaacagtaatatattgtttc 297  Q
    |||||||||||||||||||||||||||||  |||||| |||||||    
T  25617467 gaaatctatttcctattaatatttccaacgctaatatcttgtttc 25617511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 57 - 98
Target Start/End: Original strand, 25616613 - 25616654
Alignment:
Q  57 tatattatcaatcaactcatacacctctctttgaactacacc 98  Q
    ||||||||||||||| |  |||||||||||||||||||||||    
T  25616613 tatattatcaatcaattattacacctctctttgaactacacc 25616654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466 (Bit Score: 47; Significance: 8e-18; HSPs: 2)
Name: scaffold0466
Description:

Target: scaffold0466; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 183 - 252
Target Start/End: Complemental strand, 8499 - 8427
Alignment:
Q  183 aagacgtatggaaacattcgggagcagataa---gttgtcaaaaatcaagttcatcattttatattctattct 252  Q
    |||||||||||||||| | ||||||||||||   ||||||||||||||||||||| |||||||||||||||||    
T  8499 aagacgtatggaaacagtggggagcagataattagttgtcaaaaatcaagttcattattttatattctattct 8427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0466; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 258 - 297
Target Start/End: Complemental strand, 8230 - 8191
Alignment:
Q  258 ctatttcctattaatatttccaacagtaatatattgtttc 297  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  8230 ctatttcctattaatatttccaacagtaatatcttgtttc 8191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1041 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold1041
Description:

Target: scaffold1041; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 253 - 297
Target Start/End: Complemental strand, 1159 - 1115
Alignment:
Q  253 gaaatctatttcctattaatatttccaacagtaatatattgtttc 297  Q
    ||||||||||||||| |||||||| |||||||||||| |||||||    
T  1159 gaaatctatttcctaataatattttcaacagtaatatcttgtttc 1115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University