View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8049_high_3 (Length: 258)

Name: NF8049_high_3
Description: NF8049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8049_high_3
NF8049_high_3
[»] chr7 (5 HSPs)
chr7 (5-244)||(27746450-27746689)
chr7 (7-80)||(20246663-20246736)
chr7 (12-80)||(37808033-37808101)
chr7 (7-50)||(26772607-26772650)
chr7 (5-72)||(30275289-30275356)
[»] chr4 (3 HSPs)
chr4 (5-75)||(41668863-41668933)
chr4 (7-80)||(53423282-53423355)
chr4 (7-64)||(7372663-7372720)
[»] chr1 (4 HSPs)
chr1 (5-81)||(5450635-5450711)
chr1 (5-80)||(6587125-6587200)
chr1 (5-54)||(5450413-5450462)
chr1 (24-80)||(34454146-34454202)
[»] chr6 (2 HSPs)
chr6 (5-80)||(4349891-4349966)
chr6 (5-80)||(4350130-4350205)
[»] chr3 (3 HSPs)
chr3 (7-73)||(43790671-43790737)
chr3 (2-70)||(9107074-9107142)
chr3 (16-80)||(39328611-39328675)
[»] chr8 (2 HSPs)
chr8 (5-80)||(32236995-32237070)
chr8 (31-75)||(40569162-40569206)
[»] chr2 (3 HSPs)
chr2 (12-75)||(24026726-24026789)
chr2 (7-73)||(14902277-14902343)
chr2 (7-80)||(40212316-40212389)


Alignment Details
Target: chr7 (Bit Score: 180; Significance: 3e-97; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 5 - 244
Target Start/End: Complemental strand, 27746689 - 27746450
Alignment:
Q  5 agtttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctcataaactgacctgctttgattctaaatgca 104  Q
    |||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||| ||||||    
T  27746689 agtttgatgtttatatatatttattagttagcactcaaattatagattcaccctaggccaccaaaatctcagaaactgacctgttttgattctgaatgca 27746590  T
Q  105 atgttagttacatggtggtttgtcggcaaataactagggattgtatttctttgatatatgacttgcagtatataggttttgcaagatcgtagtttgaact 204  Q
    ||||||||||| |||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||| ||||||||||    
T  27746589 atgttagttacgtggtggtttgtctgcaaataactagggattgtacttctttgatatatgacttgcagtatataggctttgcaagatcgaagtttgaact 27746490  T
Q  205 ttgaaccagtcaaaatgttcaagaccaacacttgaatttg 244  Q
    || ||||| ||||||||||||||||| ||||||| |||||    
T  27746489 ttaaaccaatcaaaatgttcaagacctacacttggatttg 27746450  T

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Target: chr7; HSP #2
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 7 - 80
Target Start/End: Complemental strand, 20246736 - 20246663
Alignment:
Q  7 tttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctcataaac 80  Q
    |||| ||||||||||| |||||||||||  ||| ||||||||| |||||| |||||||||||||||||||||||    
T  20246736 tttgatgtttatatatgtttattagttatgacctaaattataggttcaccataggccaccaaaatctcataaac 20246663  T

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Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 12 - 80
Target Start/End: Complemental strand, 37808101 - 37808033
Alignment:
Q  12 tgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctcataaac 80  Q
    |||||||||||||||||||||||  ||| |||||||||  || |||||  |||||||||||||||||||    
T  37808101 tgtttatatatatttattagttaggacctaaattataggctcgccctaaaccaccaaaatctcataaac 37808033  T

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Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 7 - 50
Target Start/End: Complemental strand, 26772650 - 26772607
Alignment:
Q  7 tttggtgtttatatatatttattagttaacacccaaattataga 50  Q
    |||| |||||||||||||||||||||||| ||||||||||||||    
T  26772650 tttgatgtttatatatatttattagttaagacccaaattataga 26772607  T

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Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 5 - 72
Target Start/End: Complemental strand, 30275356 - 30275289
Alignment:
Q  5 agtttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatc 72  Q
    |||||| |||||||||||||||||||||||  | ||||||| ||||||| ||| || |||| ||||||    
T  30275356 agtttgatgtttatatatatttattagttagaatccaaattgtagattcgccccagaccactaaaatc 30275289  T

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Target: chr4 (Bit Score: 51; Significance: 3e-20; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 5 - 75
Target Start/End: Complemental strand, 41668933 - 41668863
Alignment:
Q  5 agtttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctca 75  Q
    |||||| |||||||||||||||||||||||  ||||||||||||| ||| |||||||||||||||||||||    
T  41668933 agtttgatgtttatatatatttattagttaggacccaaattataggttcgccctaggccaccaaaatctca 41668863  T

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Target: chr4; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 53423282 - 53423355
Alignment:
Q  7 tttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctcataaac 80  Q
    |||| |||||||||||||||||||||||  ||| ||||| ||| |||| ||||  |||||||||||||||||||    
T  53423282 tttgatgtttatatatatttattagttaggacctaaattgtaggttcatcctataccaccaaaatctcataaac 53423355  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 64
Target Start/End: Original strand, 7372663 - 7372720
Alignment:
Q  7 tttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggcca 64  Q
    |||| |||||||||||||||||||||||| | ||||||| ||| ||| ||||| ||||    
T  7372663 tttgatgtttatatatatttattagttaagatccaaattgtaggttcgccctaagcca 7372720  T

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Target: chr1 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 5 - 81
Target Start/End: Complemental strand, 5450711 - 5450635
Alignment:
Q  5 agtttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctcataaact 81  Q
    |||||| |||||||||||||||||||||||  | ||||||||||||||| |  ||| ||| ||||||||||||||||    
T  5450711 agtttgatgtttatatatatttattagttatgatccaaattatagattcgcgatagaccatcaaaatctcataaact 5450635  T

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Target: chr1; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 6587125 - 6587200
Alignment:
Q  5 agtttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctcataaac 80  Q
    |||||| |||||||||| ||||||||||||  |||||||||||||||| ||||||  |||| ||||||| ||||||    
T  6587125 agtttgatgtttatatagatttattagttagaacccaaattatagatttaccctaaaccacaaaaatctgataaac 6587200  T

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Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 54
Target Start/End: Complemental strand, 5450462 - 5450413
Alignment:
Q  5 agtttggtgtttatatatatttattagttaacacccaaattatagattca 54  Q
    |||||| |||||||||||||||||||||||  || |||||||||||||||    
T  5450462 agtttgatgtttatatatatttattagttatgactcaaattatagattca 5450413  T

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Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 24 - 80
Target Start/End: Original strand, 34454146 - 34454202
Alignment:
Q  24 tttattagttaacacccaaattatagattcaccctaggccaccaaaatctcataaac 80  Q
    |||||||||||  ||||||||| ||| ||| ||||||||||||||||||||| ||||    
T  34454146 tttattagttaggacccaaattgtaggttcgccctaggccaccaaaatctcagaaac 34454202  T

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Target: chr6 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 4349966 - 4349891
Alignment:
Q  5 agtttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctcataaac 80  Q
    |||||| |||||||||||||||| ||||||  ||||||||| | | ||| ||||||||||||||||||||| ||||    
T  4349966 agtttgatgtttatatatatttactagttatgacccaaattgtgggttcgccctaggccaccaaaatctcagaaac 4349891  T

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Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 80
Target Start/End: Complemental strand, 4350205 - 4350130
Alignment:
Q  5 agtttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctcataaac 80  Q
    |||||| |||||||||||||||| ||||||  ||||||||| | | ||| ||||||||||||||||||||| ||||    
T  4350205 agtttgatgtttatatatatttactagttatgacccaaattgtgggttcgccctaggccaccaaaatctcagaaac 4350130  T

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Target: chr3 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 7 - 73
Target Start/End: Original strand, 43790671 - 43790737
Alignment:
Q  7 tttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatct 73  Q
    |||| |||||||||||||||||||||||  ||||||||| ||  ||| |||||||||||||||||||    
T  43790671 tttgatgtttatatatatttattagttaggacccaaattgtaagttcgccctaggccaccaaaatct 43790737  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 2 - 70
Target Start/End: Complemental strand, 9107142 - 9107074
Alignment:
Q  2 tcgagtttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaa 70  Q
    |||| |||| |||||||||||||||||||||||  | ||||||  ||| ||| ||||||||||||||||    
T  9107142 tcgaatttgatgtttatatatatttattagttatgatccaaatggtaggttcgccctaggccaccaaaa 9107074  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 80
Target Start/End: Original strand, 39328611 - 39328675
Alignment:
Q  16 tatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctcataaac 80  Q
    ||||||||| |||||||||  ||| || || ||| |||||||||| ||||| |||||||||||||    
T  39328611 tatatatatatattagttaggacctaatttgtaggttcaccctagaccaccgaaatctcataaac 39328675  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 80
Target Start/End: Original strand, 32236995 - 32237070
Alignment:
Q  5 agtttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctcataaac 80  Q
    |||||| |||||||||||||||||||||||  ||||||||| ||| |||  | ||||||||||| |||||| ||||    
T  32236995 agtttgatgtttatatatatttattagttaggacccaaattgtaggttcgtcttaggccaccaatatctcagaaac 32237070  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 31 - 75
Target Start/End: Original strand, 40569162 - 40569206
Alignment:
Q  31 gttaacacccaaattatagattcaccctaggccaccaaaatctca 75  Q
    |||||||||||||||||||||||  | |||||||||| |||||||    
T  40569162 gttaacacccaaattatagattcgtcataggccaccagaatctca 40569206  T

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Target: chr2 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 24026726 - 24026789
Alignment:
Q  12 tgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctca 75  Q
    |||||||||||||||||||||||| | | ||||| ||| ||| |||||| ||||||||||||||    
T  24026726 tgtttatatatatttattagttaagatctaaattgtaggttcgccctagaccaccaaaatctca 24026789  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 14902343 - 14902277
Alignment:
Q  7 tttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatct 73  Q
    |||| |||||||||||||||||||||||  ||||||||| ||  ||| || ||| ||||||||||||    
T  14902343 tttgatgtttatatatatttattagttaggacccaaattgtatgttcgccatagaccaccaaaatct 14902277  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 7 - 80
Target Start/End: Original strand, 40212316 - 40212389
Alignment:
Q  7 tttggtgtttatatatatttattagttaacacccaaattatagattcaccctaggccaccaaaatctcataaac 80  Q
    |||| ||||| ||||  |||||||||||  ||||||||||||||||  | |||| |||| ||||||||||||||    
T  40212316 tttgatgtttgtataagtttattagttatgacccaaattatagatttgctctagaccactaaaatctcataaac 40212389  T

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