View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8049_low_2 (Length: 463)
Name: NF8049_low_2
Description: NF8049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8049_low_2 |
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Alignment Details
Target: chr2 (Bit Score: 392; Significance: 0; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 392; E-Value: 0
Query Start/End: Original strand, 51 - 462
Target Start/End: Complemental strand, 12843751 - 12843340
Alignment:
| Q |
51 |
attacaggttcaatggtgaaaatctttcacgtgaatcgatgaatgtaattgtgaggaattggcttgatttcgaagtggatcagattgtacaagttggaag |
150 |
Q |
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| T |
12843751 |
attacaggttcaatggtgaaaatctttcacgtgaatcgataaatgtaattgtgaggaattggcttgatttcgaagtggatcagagtgtacaagttggaag |
12843652 |
T |
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| Q |
151 |
gagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttgg |
250 |
Q |
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| T |
12843651 |
gagcaattggaatgcagagaatctttatgaagatcaaattgcttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttgg |
12843552 |
T |
|
| Q |
251 |
aggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcattcttatgttc |
350 |
Q |
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| T |
12843551 |
aggtaccgttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcattcttatgttc |
12843452 |
T |
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| Q |
351 |
ttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtgtttgatattagtcttgttgagtattgcacttatat |
450 |
Q |
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| T |
12843451 |
ttaactcattttagagattatagtgttaatttcacctatagaggtagaaatagaatcatatagtgtttgatattagtcttgttgagtattgcacttattt |
12843352 |
T |
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| Q |
451 |
tcttcgacatgc |
462 |
Q |
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| T |
12843351 |
tgtttgacatgc |
12843340 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 58 - 378
Target Start/End: Original strand, 12861737 - 12862057
Alignment:
| Q |
58 |
gttcaatggtgaaaatctttcacgtgaatcgatgaatgtaattgtgaggaattggcttgatttcgaagtggatcagattgtacaagttggaaggagcaat |
157 |
Q |
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| T |
12861737 |
gttcaatggtgaagctctttcacgtttatcgatggatgaaattgtgaggaaatgtcttggtttcaaagtggatcagagtattgaagttggtaggagtaat |
12861836 |
T |
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| Q |
158 |
tggaatgcagagaatctttatgaagatcaaattgcttatgcgtccattgatgcttattgtgcttttagtatcggaattcgcgttcaagcttggaggtacc |
257 |
Q |
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| T |
12861837 |
tggaatcaagagaatctttatgcacatcaagttgcttatgcgtccattgatgcttattttgcgtttcttatcggaatttgtttccaagcttggaggtacc |
12861936 |
T |
|
| Q |
258 |
gttaagattgattttacattgtaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactc |
357 |
Q |
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| T |
12861937 |
cttaagatcgattttactttctaaatttcaatcaagattcaagattatagtgttaatgtctactgttaagatcgattaatcactcttatgttcgtaactc |
12862036 |
T |
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| Q |
358 |
attttagagattatagtgtta |
378 |
Q |
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| T |
12862037 |
attttagagattatagtgtta |
12862057 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 303 - 377
Target Start/End: Complemental strand, 13125837 - 13125763
Alignment:
| Q |
303 |
tatagtgttaatgtctactgttaagatcgattaatcattcttatgttcttaactcattttagagattatagtgtt |
377 |
Q |
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| T |
13125837 |
tatagtgttaatgtgtactgttaagatcgattaatcactcttatgttcctaactcattttagagattatagtgtt |
13125763 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 281 - 321
Target Start/End: Complemental strand, 13125629 - 13125589
Alignment:
| Q |
281 |
aatttcaatcaagattcaagattatagtgttaatgtctact |
321 |
Q |
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| T |
13125629 |
aatttctatcaagattcaagatcatagtgttaatgtctact |
13125589 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 401 - 448
Target Start/End: Complemental strand, 13125587 - 13125540
Alignment:
| Q |
401 |
tagaatcatatagtgtttgatattagtcttgttgagtattgcacttat |
448 |
Q |
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| T |
13125587 |
tagaataatacagtgtttgattttagtgttgttgagtattgcacttat |
13125540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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