View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8049_low_6 (Length: 306)
Name: NF8049_low_6
Description: NF8049
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8049_low_6 |
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Alignment Details
Target: chr2 (Bit Score: 279; Significance: 1e-156; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 279; E-Value: 1e-156
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 39704437 - 39704731
Alignment:
| Q |
1 |
cacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgat |
100 |
Q |
| |
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||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704437 |
cacatcaactgcaatgatttcaatgcttataggtattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgat |
39704536 |
T |
|
| Q |
101 |
gaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704537 |
gaaataaatcatggcaaggttgataatgtgtattggatgttggtcatgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagt |
39704636 |
T |
|
| Q |
201 |
atgaaaatgtttacgaggttatgatgttatgatgaatgttatctgtgtttggttggaataataataagtgataatgataatatgatcttcttctc |
295 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39704637 |
atgaaaatgtttaagaggttatgatgttatgatgaatgttatctgtgtttggttggaataataataagtgataatgataatatgatcttcttctc |
39704731 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 213
Target Start/End: Original strand, 39695528 - 39695740
Alignment:
| Q |
1 |
cacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39695528 |
cacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgat |
39695627 |
T |
|
| Q |
101 |
gaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagt |
200 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
39695628 |
gaaataaatcatggcaaggttgataatgtgtattggatgttagtagtgtttggaggtatcaactttgtgtattacctattgtgctctatttcttacaagt |
39695727 |
T |
|
| Q |
201 |
atgaaaatgttta |
213 |
Q |
| |
|
||||||||||||| |
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| T |
39695728 |
atgaaaatgttta |
39695740 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 205
Target Start/End: Complemental strand, 39934585 - 39934381
Alignment:
| Q |
1 |
cacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgat |
100 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39934585 |
cacatcaactgcaatgatttcaatgcttataggaattgctttttacttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgat |
39934486 |
T |
|
| Q |
101 |
gaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagt |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||| | |
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| T |
39934485 |
gaaataaatcatggcaaggttgataatgtgtattggatgttagtcgtgtttggagctatcaactttgtgtattatttactgtgctctatttcttacaaat |
39934386 |
T |
|
| Q |
201 |
atgaa |
205 |
Q |
| |
|
||||| |
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|
| T |
39934385 |
atgaa |
39934381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 111; E-Value: 5e-56
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 39928938 - 39928696
Alignment:
| Q |
1 |
cacatcaacagcaatgatttcaatgcttataggaattgctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgat |
100 |
Q |
| |
|
||||||||| |||| | |||||||||||||||| |||||||||| |||||| ||| |||||||| ||||||||||||||||||||||||||||||||| |
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| T |
39928938 |
cacatcaactgcaacggtttcaatgcttataggggttgctttttacatgagcaatgcattaattgatcaagttcgtaggagtactgattggttacctgat |
39928839 |
T |
|
| Q |
101 |
gaaataaatcatggcaaggttgataatgtgtattggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagt |
200 |
Q |
| |
|
|| ||||||||||| ||| |||| |||||||| |||||||| ||| | | || | ||| |||||||||||||||||| | || ||| | ||||||||| |
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| T |
39928838 |
gacataaatcatgggaagattgacaatgtgtactggatgttagtcctactcgggggtataaactttgtgtattacttattttgttcttctccttacaagt |
39928739 |
T |
|
| Q |
201 |
atgaaaatgtttacgaggttatgatgttatgatgaatgttatc |
243 |
Q |
| |
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||||||||||||| |||| | |||||||||||| ||||||||| |
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| T |
39928738 |
atgaaaatgtttaagaggatgtgatgttatgataaatgttatc |
39928696 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 132 - 243
Target Start/End: Complemental strand, 38059047 - 38058936
Alignment:
| Q |
132 |
attggatgttggtcgtgtttggagctatcaactttgtgtattacttactgtgctctatttcttacaagtatgaaaatgtttacgaggttatgatgttatg |
231 |
Q |
| |
|
||||||||||||| || ||||| | |||||||||| |||||||||| | || ||| | |||||||||||||||||| || |||| | | |||||||| |
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| T |
38059047 |
attggatgttggttgtatttgggggtatcaactttaggtattacttattttgttcttctgtttacaagtatgaaaatgtgtaagaggatgtaatgttatg |
38058948 |
T |
|
| Q |
232 |
atgaatgttatc |
243 |
Q |
| |
|
|| ||||||||| |
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| T |
38058947 |
ataaatgttatc |
38058936 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 38 - 114
Target Start/End: Complemental strand, 38059126 - 38059050
Alignment:
| Q |
38 |
gctttttatttgagcactgctttaattgaccaagttcgtaggagtactgattggttacctgatgaaataaatcatgg |
114 |
Q |
| |
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|||||| | ||||||||| ||||| |||||||| | | ||||| |||| |||||||||| ||||| ||||||||||| |
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| T |
38059126 |
gcttttaacttgagcactactttagttgaccaaatccataggattactaattggttaccagatgacataaatcatgg |
38059050 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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