View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_high_1 (Length: 592)
Name: NF8050_high_1
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 547; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 547; E-Value: 0
Query Start/End: Original strand, 17 - 571
Target Start/End: Original strand, 34571700 - 34572254
Alignment:
| Q |
17 |
cagcaacacatataaacacataaaaaatgtggaaactactgtgaaattccagaagtatgtaattgcctgccaccaattccactggctctctgtctgcaaa |
116 |
Q |
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| T |
34571700 |
cagcaacacatataaacacataaaaaatgtggaaactactgtgaaattccagaagtatgtaattgcctgccaccaattccactggctctctgtctgcaaa |
34571799 |
T |
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| Q |
117 |
gttgccaacaaatgttctttgtttatcaaatcctccttatctagcaccttgaacctctgagcaagtaggttagcaaactgatcaaaactctccttcaaac |
216 |
Q |
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| T |
34571800 |
gttgccaacaaatgttctttgtttatcaaatcctccttatctagcaccttgaacctctgagcaagtaggttagcaaactgatcaaaactctccttcaaac |
34571899 |
T |
|
| Q |
217 |
cttgtttagccccattctctatcacacctttcatcattgtgctttgtaggaaaaccattccccacgttatcacaagatgtgaggattcctttacacaaga |
316 |
Q |
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| T |
34571900 |
cttgtttagccccattctctatcacacctttcatcattgtgctttgtaggaaaaccattccccacgttatcacaagatgtgaggattcctttacacaaga |
34571999 |
T |
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| Q |
317 |
cacatcttcgccaggcattatcttgtaaagaatttcgacctgaaatgaattcccataaggaacctcaggggtgcatacactaacaagtacatcaaattca |
416 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34572000 |
cacatcttcgccaggcattatcttgtaaagaatttcgacccgaaatgaattcccataaggaacctcaggggtgcatacactaacaagtacatcaaattca |
34572099 |
T |
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| Q |
417 |
tctttagtcgctctaatataggtttgttcctcggtggtattgagagctttaaccaattttgaagcagcttttgtatagttgacgactcgagtcaaacaag |
516 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34572100 |
tctttagtcgctctaatataggtttgttcctcagtggtattgagagctttaaccaattttgaagcagcttttgtatagttgacgactcgagtcaaacaag |
34572199 |
T |
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| Q |
517 |
acatatcttcatctttccaggaccaagccccttcttgcaaatttgttgtcccttg |
571 |
Q |
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| T |
34572200 |
acatatcttcatctttccaggaccaagccccttcttgcaaatttgttgtcccttg |
34572254 |
T |
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