View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_high_11 (Length: 318)
Name: NF8050_high_11
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_high_11 |
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Alignment Details
Target: chr6 (Bit Score: 202; Significance: 1e-110; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 1 - 302
Target Start/End: Original strand, 11297356 - 11297661
Alignment:
| Q |
1 |
taacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgaggg-catcaaacacttcan |
99 |
Q |
| |
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|||||| ||||||||||| |||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||| || | ||||||||| |
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| T |
11297356 |
taacaacgtgtcaatattgcttgaagaaaatgcaatgaaagccattgggtcatgaagctttctaaggtttcatagagttgaggggcagcgaacacttcat |
11297455 |
T |
|
| Q |
100 |
nnnnnnn----accttggttaacgtacgtgcaaaatcatctataataactctcggttaacgtaatgtgtcaaactcgacaaattaatgataacagattca |
195 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| |
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| T |
11297456 |
tttttttttttaccttggttaacgtacgtgcaaaattatctataataactctcggttagcgtaatgtatcaaactcgacaaattaatgataacagattca |
11297555 |
T |
|
| Q |
196 |
tttataaatcacaaatcaacacttctaagaacaaactccaactagtaatatagcatacgagttacgtcaacctaaattgtcaaaatcacattaacatagt |
295 |
Q |
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||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
11297556 |
tttataaatcacaaatcaacacttc-aagaacaaactccaactagtaatatagcatacgagttacgtcaacctaaattgccaaaatcacattaacatagt |
11297654 |
T |
|
| Q |
296 |
aatttgt |
302 |
Q |
| |
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||||||| |
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| T |
11297655 |
aatttgt |
11297661 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 147 - 281
Target Start/End: Original strand, 11292093 - 11292227
Alignment:
| Q |
147 |
tcggttaacgtaatgtgtcaaactcgacaaa-ttaatgataacagattcatttataaatcacaaatcaacacttctaagaacaaactccaactagtaata |
245 |
Q |
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| T |
11292093 |
tcggttagtgtaatgtctcaaactcaacaaaattaatgttaacaaattcaattataaatcacaatttaacacttc-aagaacaaactccaactagtaaga |
11292191 |
T |
|
| Q |
246 |
tagcatacgagttacgtcaacctaaattgtcaaaat |
281 |
Q |
| |
|
|||| || |||||||||||| | |||||| |||||| |
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| T |
11292192 |
tagcctaggagttacgtcaatccaaattgccaaaat |
11292227 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 175 - 281
Target Start/End: Original strand, 30909041 - 30909147
Alignment:
| Q |
175 |
aaattaatgataacagattcatttataaatcacaaatcaacacttctaagaacaaactccaactagtaatatagcatacgagttacgtcaacctaaattg |
274 |
Q |
| |
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||||||||| | ||| |||||||||||||||||||||||||||||| | || |||| |||||||||| ||| | || |||||||||||||| |||||| |
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| T |
30909041 |
aaattaatgttgacacattcatttataaatcacaaatcaacacttcaagaaaaaaaccacaactagtaagataacctaggagttacgtcaacccaaattg |
30909140 |
T |
|
| Q |
275 |
tcaaaat |
281 |
Q |
| |
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|||||| |
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|
| T |
30909141 |
ccaaaat |
30909147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 2 - 82
Target Start/End: Original strand, 50237122 - 50237202
Alignment:
| Q |
2 |
aacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgag |
82 |
Q |
| |
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||||||||| ||||||| ||||||||||||||||| |||||||| |||| | ||||| ||||||||||| |||||||| |
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| T |
50237122 |
aacaatgtgccaatattgtttgaagaaaatgcaatggaagccatctggtccaggtgctttgtaaggtttcattgagttgag |
50237202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 3 - 98
Target Start/End: Original strand, 35135777 - 35135872
Alignment:
| Q |
3 |
acaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaacacttca |
98 |
Q |
| |
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|||||||| || |||| ||||||||||||||||||||| || || || | ||||||| || || |||||||||||||||||| | ||||||||| |
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| T |
35135777 |
acaatgtgccagtattgcttgaagaaaatgcaatgaaacccgtcaggaccaggggctttgtatggcttcatagagttgagggcagcgaacacttca |
35135872 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 97
Target Start/End: Complemental strand, 19265005 - 19264911
Alignment:
| Q |
3 |
acaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaacacttc |
97 |
Q |
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| T |
19265005 |
acaatgtgccagtattgtttgaagaaaatgcaatgaaacccatcaggaccaggggctttgtatggcttcatagagttgagggcagcgaacacttc |
19264911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 2 - 91
Target Start/End: Complemental strand, 16322039 - 16321950
Alignment:
| Q |
2 |
aacaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaa |
91 |
Q |
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||||||||| || |||| || |||||||||||||||||||||||||| | | ||||| || |||||||| |||||||||||| |||| |
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| T |
16322039 |
aacaatgtgccagtattgtttaaagaaaatgcaatgaaagccatcgggaccaggtgctttgtagggtttcatggagttgagggcagcaaa |
16321950 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 98
Target Start/End: Complemental strand, 40327767 - 40327672
Alignment:
| Q |
3 |
acaatgtgtcaatattacttgaagaaaatgcaatgaaagccatcgggtcatagggctttctaaggtttcatagagttgagggcatcaaacacttca |
98 |
Q |
| |
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|||||||| || |||| |||||||||||||||||||| || || || | ||||||| ||||| |||||||||||| ||||| | ||||||||| |
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| T |
40327767 |
acaatgtgccagtattgtttgaagaaaatgcaatgaaacccgtcaggaccaggggctttgtaaggcttcatagagttgtgggcagcgaacacttca |
40327672 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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