View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_high_16 (Length: 274)
Name: NF8050_high_16
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_high_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 4 - 274
Target Start/End: Complemental strand, 9299094 - 9298824
Alignment:
| Q |
4 |
attggatgaatcactgagacaatttccaaggttcattagaaatagcagcatagcaagttttgttaatatcagtgacatgttgaagggattcttagaactt |
103 |
Q |
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| T |
9299094 |
attggatgaatcactgagacaatttccaaggttcattagaaatagcagcatagcaagttttgttaatatcagtgacatgttgaagggattcttagaactt |
9298995 |
T |
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| Q |
104 |
taaactggtataatttaatatatagagcaagagagggataaagtagacagaagatgatataaagaaacataattgtatctatctctatgctattaagaat |
203 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
9298994 |
taaactggtataatttaatatatagagcaagagagggataaagtagaaagaagatgatataaagaaacataattgtatctatctctatgctattaaaaat |
9298895 |
T |
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| Q |
204 |
gaaaataatatgctgcnnnnnnnnntattgattaagaatcggtcaaagtccaagaatatgatgtgcattgc |
274 |
Q |
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|||||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
9298894 |
gaaaataatatgctgcaaaaaaaaatatagattaagaatcggtcaaagtccaagaatatgatgtgcattgc |
9298824 |
T |
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