View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8050_high_17 (Length: 269)

Name: NF8050_high_17
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8050_high_17
NF8050_high_17
[»] chr5 (5 HSPs)
chr5 (1-252)||(15801600-15801851)
chr5 (3-250)||(12596350-12596604)
chr5 (5-169)||(30416632-30416796)
chr5 (7-197)||(20837133-20837323)
chr5 (7-197)||(20810778-20810968)
[»] chr8 (13 HSPs)
chr8 (3-250)||(3362838-3363085)
chr8 (5-238)||(3392800-3393033)
chr8 (5-250)||(3313468-3313713)
chr8 (5-230)||(3408534-3408759)
chr8 (5-230)||(7165881-7166106)
chr8 (6-230)||(3326198-3326422)
chr8 (6-233)||(3268441-3268668)
chr8 (5-230)||(3287669-3287894)
chr8 (5-230)||(3263742-3263967)
chr8 (5-161)||(3399834-3399990)
chr8 (6-203)||(13786303-13786500)
chr8 (5-170)||(31174549-31174714)
chr8 (5-162)||(13807603-13807760)
[»] scaffold0468 (1 HSPs)
scaffold0468 (5-162)||(7470-7627)
[»] chr3 (2 HSPs)
chr3 (5-227)||(32412177-32412399)
chr3 (5-162)||(6907064-6907221)
[»] chr2 (1 HSPs)
chr2 (5-190)||(14768131-14768317)
[»] chr7 (1 HSPs)
chr7 (18-197)||(8372957-8373136)
[»] chr6 (1 HSPs)
chr6 (95-197)||(31060156-31060258)


Alignment Details
Target: chr5 (Bit Score: 252; Significance: 1e-140; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 252; E-Value: 1e-140
Query Start/End: Original strand, 1 - 252
Target Start/End: Complemental strand, 15801851 - 15801600
Alignment:
Q  1 agagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccattta 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15801851 agagcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccattta 15801752  T
Q  101 gtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15801751 gtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttat 15801652  T
Q  201 ttttagtttctcgtgtatttgatcattgggtatcttttgtagcttggatatt 252  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15801651 ttttagtttctcgtgtatttgatcattgggtatcttttgtagcttggatatt 15801600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 12596604 - 12596350
Alignment:
Q  3 agcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcag-------cacttctattccaatatcagcatgaagtccacaccc 95  Q
    ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||       ||||  |||||||||||| || |||||  |||||||    
T  12596604 agcattcattccaagcttgttattcttttcaacttttatgaggcttctctctatcaggtatcagcactgttattccaatatccgcttgaagatcacaccc 12596505  T
Q  96 atttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaag 195  Q
    |||||||||||||||||||||||| |||||||||||||||||||||||||| | |||||||||||||| |||||||||| |||||  |||||| || ||     
T  12596504 atttagtatctctgtaacataagcactatccttaccgataaagaaacaacaaatatcaagaaatatatccttttccatacgatcccttaaaccttcgaaa 12596405  T
Q  196 cttatttttagtttctcgtgtatttgatcattgggtatcttttgtagcttggata 250  Q
    |||||||||||||||| |||||||| ||||||| ||||||||| |||||| ||||    
T  12596404 cttatttttagtttcttgtgtatttcatcattgagtatcttttttagctttgata 12596350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 5 - 169
Target Start/End: Complemental strand, 30416796 - 30416632
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    |||||||||||||||||||||||||||||||||||| |||||| | |||||| || ||   ||||||||||  ||||  ||||||||| |||||||| ||    
T  30416796 catgcattccaagcttgttattcttttcaacttttaagaggctccgctctatgaggacagatattccaatactagcaaaaagtccacagccatttagaat 30416697  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattctttt 169  Q
    ||| |||||||||||||| ||||| ||||||||||||||||| |  ||||||||||||| |||||    
T  30416696 ctcagtaacataagctctgtccttgccgataaagaaacaacatatgtcaagaaatatatcctttt 30416632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 20837323 - 20837133
Alignment:
Q  7 tgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatct 106  Q
    |||||||||||| ||||||||||||| ||||||| |||||| | |||||| || |    ||||||||||||||||||||||||||||||||| |||||||    
T  20837323 tgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctatgagaatagatattccaatatcagcatgaagtccacacccattaagtatct 20837224  T
Q  107 ctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagct 197  Q
    ||||||||| |||||| | ||| || || ||||||||||| |  ||||||||||| | || || | ||| ||| |||||||||||| ||||    
T  20837223 ctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaatatgtcctgtttcgtataatcttctaaaccatcatagct 20837133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 7 - 197
Target Start/End: Complemental strand, 20810968 - 20810778
Alignment:
Q  7 tgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatct 106  Q
    |||||||||||| ||||||||||||| ||||||| |||||| | |||||| || |    ||||||| ||| ||||||||||||||||||||| |||||||    
T  20810968 tgcattccaagcgtgttattcttttcgacttttacgaggctgcgctctatgagaatagatattccactataagcatgaagtccacacccattaagtatct 20810869  T
Q  107 ctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagct 197  Q
    ||||||||| |||||| | ||| || || ||||||||||| |  ||||||||||| | ||||| | ||| ||| |||||||||||| ||||    
T  20810868 ctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaatatgtccttttgcgtataatcttctaaaccatcatagct 20810778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 192; Significance: 1e-104; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 3 - 250
Target Start/End: Complemental strand, 3363085 - 3362838
Alignment:
Q  3 agcatgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagt 102  Q
    |||||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||||| ||||||||| |||||||||    
T  3363085 agcatgcattccaagctttttattcttttcaacttttatgaggcttctctctatcaacactgttattccaatatcagcattaagtccacaaccatttagt 3362986  T
Q  103 atctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttattt 202  Q
    |||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||    
T  3362985 atctttgtaacataagctctatccttaccgataaagaaacagcagacatcaagaaatatattcttttccatacgatcctttaaaccatcaaagcttattt 3362886  T
Q  203 ttagtttctcgtgtatttgatcattgggtatcttttgtagcttggata 250  Q
    ||||| |||||||||||||||||||||||||||||| |||||| ||||    
T  3362885 ttagtatctcgtgtatttgatcattgggtatcttttctagctttgata 3362838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 166; E-Value: 6e-89
Query Start/End: Original strand, 5 - 238
Target Start/End: Original strand, 3392800 - 3393033
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    |||||||||||||||| ||||||||||||||||||| ||||||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||    
T  3392800 catgcattccaagctttttattcttttcaacttttatgaggcttctctctatcaacactgttattccaatatcagcatgaagtccacaaccatttagtat 3392899  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttattttt 204  Q
    || ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||| ||||   |||||||| |||||| ||||||    
T  3392900 ctttgtaacataagctctatccttgccgataaagaaacaacagacatcaagaaatatatccttttccatacgatcgcttaaaccattaaagctaattttt 3392999  T
Q  205 agtttctcgtgtatttgatcattgggtatctttt 238  Q
    |||||||| |||||||||||||||||||| ||||    
T  3393000 agtttctcatgtatttgatcattgggtatttttt 3393033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 158; E-Value: 4e-84
Query Start/End: Original strand, 5 - 250
Target Start/End: Complemental strand, 3313713 - 3313468
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    ||||||||||||||||||||| |||||||| |||||  ||||||| ||| |||||||||  ||||||||||||||||||||||||||| |||||||||||    
T  3313713 catgcattccaagcttgttatacttttcaatttttattaggcttcgctcaatcagcactgttattccaatatcagcatgaagtccacaaccatttagtat 3313614  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttattttt 204  Q
     | ||| ||||| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||  |||||| |||||||||||||||    
T  3313613 atttgtgacatatgctctatccttaccgataaagaaacaacacacatcaagaaatatatccttttccatatgatcccttaaaccgtcaaagcttattttt 3313514  T
Q  205 agtttctcgtgtatttgatcattgggtatcttttgtagcttggata 250  Q
    |||||||| |||||||||||||| |||||||||| |||||| ||||    
T  3313513 agtttctcatgtatttgatcattaggtatcttttctagctttgata 3313468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 118; E-Value: 3e-60
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 3408534 - 3408759
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    ||||||||||||||||||||||||| ||||||||||||||||| |  ||||| || ||  |||||||||||||||||| ||||||||| |||||||||||    
T  3408534 catgcattccaagcttgttattcttctcaacttttaggaggctccggtctatgaggaccgctattccaatatcagcataaagtccacagccatttagtat 3408633  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttattttt 204  Q
    |||||||||||| || || |||||||| |||||||||||||| |  ||||||||||||| |||| |||||| ||||| |||||||||| |||||||| |     
T  3408634 ctctgtaacataggccctgtccttaccaataaagaaacaacaaatgtcaagaaatatatcctttaccatatcatcctttaaaccatcatagcttattctc 3408733  T
Q  205 agtttctcgtgtatttgatcattggg 230  Q
    || |||||||| | ||||||||||||    
T  3408734 agcttctcgtgcacttgatcattggg 3408759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 7165881 - 7166106
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    |||||||||||||||||||||||||||||| ||| |  ||||| | |||||  || ||   ||||||||| ||||||| ||||||||| |||||||||||    
T  7165881 catgcattccaagcttgttattcttttcaattttcacaaggctccgctctacgaggaccgttattccaatgtcagcataaagtccacaaccatttagtat 7165980  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttattttt 204  Q
    ||| |||||||| ||||||||||| ||||||||||||||||| | |||||||||||||| |||| |||||| ||||| |||||| ||| |||||||| |     
T  7165981 ctcagtaacataggctctatccttgccgataaagaaacaacatatatcaagaaatatatcctttgccatatcatcctttaaaccgtcatagcttattctc 7166080  T
Q  205 agtttctcgtgtatttgatcattggg 230  Q
    |||||||| || | ||||||||||||    
T  7166081 agtttctcttgcacttgatcattggg 7166106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 89; E-Value: 6e-43
Query Start/End: Original strand, 6 - 230
Target Start/End: Original strand, 3326198 - 3326422
Alignment:
Q  6 atgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatc 105  Q
    ||||||||||||||||||||||||||||| |||||  ||||| | |||||| || ||   |||||||||||  |||| ||||||||| ||||||||||||    
T  3326198 atgcattccaagcttgttattcttttcaatttttacaaggctccgctctatgagaacacttattccaatatttgcataaagtccacagccatttagtatc 3326297  T
Q  106 tctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttattttta 205  Q
    |||||||| |  ||||||||||| || |||||||||||||| |  |||||||||||||  |||||||||| ||||| |||||||||  |||| ||| | |    
T  3326298 tctgtaacttcggctctatccttgcctataaagaaacaacatatgtcaagaaatatatctttttccatatcatcctttaaaccatcgtagctaattctca 3326397  T
Q  206 gtttctcgtgtatttgatcattggg 230  Q
    ||||||| || | ||||||||||||    
T  3326398 gtttctcttgcacttgatcattggg 3326422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 6 - 233
Target Start/End: Original strand, 3268441 - 3268668
Alignment:
Q  6 atgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatc 105  Q
    |||||||||||| |||||| ||||||||| ||||||||||||||||||||| || ||   |||||||||| |||||| ||   |||| |||| ||  |||    
T  3268441 atgcattccaagtttgttactcttttcaatttttaggaggcttctctctatgaggacagttattccaataccagcataaaagtcacaaccatctataatc 3268540  T
Q  106 tctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttattttta 205  Q
    |||| |||||| ||||| |||||||| |||||||||||||| |  ||||||||||||| ||||||  ||| || || |||||||||| |||||||| |||    
T  3268541 tctgaaacatatgctctgtccttaccaataaagaaacaacatatgtcaagaaatatatccttttctgtatcattctttaaaccatcatagcttattctta 3268640  T
Q  206 gtttctcgtgtatttgatcattgggtat 233  Q
    ||||||| || | || ||||| ||||||    
T  3268641 gtttctcatgcactttatcatcgggtat 3268668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 3287669 - 3287894
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    |||||||| ||||||||||||  || ||||||||||||||||| | |||||  || |||  ||||||| | ||||||| ||||||||| |||||||||||    
T  3287669 catgcatttcaagcttgttataattgtcaacttttaggaggctccgctctacgaggactgttattccagtgtcagcatcaagtccacagccatttagtat 3287768  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttattttt 204  Q
    |||||| ||||| | ||| |||||||| |||||||||||||| |  ||||||||||||| |||||||||||  |  | ||| |||||| |||||||| |     
T  3287769 ctctgtgacataggttctgtccttaccaataaagaaacaacaaatgtcaagaaatatatccttttccatatcttgatttaacccatcatagcttattctc 3287868  T
Q  205 agtttctcgtgtatttgatcattggg 230  Q
    ||||| || || ||||||| ||||||    
T  3287869 agtttttcttggatttgatgattggg 3287894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 5 - 230
Target Start/End: Original strand, 3263742 - 3263967
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    ||||||||||||  |||||||||||||| | |||||  ||||| |  ||||| || |   ||||||||||| |||||||||||||||| ||||| |||||    
T  3263742 catgcattccaattttgttattcttttccatttttacaaggctccgttctatgaggatcgctattccaataacagcatgaagtccacagccattaagtat 3263841  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttattttt 204  Q
    |||||| || |||||||| || || ||||||||||||||||| |  ||||||||||||| ||||||||||  ||||| |||||||||  | |||||| |     
T  3263842 ctctgttacgtaagctctgtctttgccgataaagaaacaacatatgtcaagaaatatatccttttccataccatcctttaaaccatcgtaacttattctc 3263941  T
Q  205 agtttctcgtgtatttgatcattggg 230  Q
    || ||||| || | ||||||||||||    
T  3263942 agcttctcttgcacttgatcattggg 3263967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 5 - 161
Target Start/End: Original strand, 3399834 - 3399990
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    |||||||||||||||||||||||||||| |||||||||||||| | |||||| || |    |||||||||||||||||||||||||||  |||| |||||    
T  3399834 catgcattccaagcttgttattcttttcgacttttaggaggctgcgctctatgagaatagatattccaatatcagcatgaagtccacatgcattaagtat 3399933  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatat 161  Q
    ||||||||||| |||||| | ||| || || ||||||||||| |  |||||||||||    
T  3399934 ctctgtaacatcagctctgttctttccaatcaagaaacaacatatgtcaagaaatat 3399990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 6 - 203
Target Start/End: Complemental strand, 13786500 - 13786303
Alignment:
Q  6 atgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatc 105  Q
    ||||||||||||  ||||||| |  |||||||||| |||||| | |||||| || ||  |||||||||||||||||  ||||||||| ||||||||||||    
T  13786500 atgcattccaagggtgttattgtcctcaacttttaagaggctccgctctatgaggacagctattccaatatcagcacaaagtccacagccatttagtatc 13786401  T
Q  106 tctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttatttt 203  Q
    ||||||||||| ||| | |||| ||| |||||||||||||| |  |||||||||| |  |||| |||||| ||||  |||||||||| | ||||||||    
T  13786400 tctgtaacataggctttgtcctcaccaataaagaaacaacatatgtcaagaaatacagcctttaccatatcatccattaaaccatcataacttatttt 13786303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 5 - 170
Target Start/End: Complemental strand, 31174714 - 31174549
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    ||||||||  |||||||||||| || |||||||||| |||||| | ||| || || ||  |||||||||||||||||||||| ||||| ||||| |||||    
T  31174714 catgcatttgaagcttgttatttttatcaacttttatgaggctgcgctcaatgaggacaactattccaatatcagcatgaagcccacagccattaagtat 31174615  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttc 170  Q
    ||||||||||| |||||| | ||| || || ||||||||||| |  ||||||||||||| ||||||    
T  31174614 ctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaagaaatatatccttttc 31174549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 5 - 162
Target Start/End: Complemental strand, 13807760 - 13807603
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    ||||||||||||| || | ||||||||| |||||||| ||||| | |||||| || |    |||||| |||||||||| ||||||||| |||| ||| ||    
T  13807760 catgcattccaagtttatcattcttttcgacttttagaaggctccgctctatgaggatagttattcccatatcagcattaagtccacaaccatctagaat 13807661  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatata 162  Q
    ||||| |||||| ||||| | ||| ||||||||||||||||| |  ||||||||||||    
T  13807660 ctctgaaacataggctctcttctttccgataaagaaacaacaaatgtcaagaaatata 13807603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0468 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: scaffold0468
Description:

Target: scaffold0468; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 7470 - 7627
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    |||||||||||||||||||||||||||| |||||||| ||||| |||||||| || ||  |||||||||||||||||  ||||||||| |||||||||||    
T  7470 catgcattccaagcttgttattcttttcgacttttagaaggctcctctctatgaggacagctattccaatatcagcaaaaagtccacaaccatttagtat 7569  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatata 162  Q
    ||| ||||||||  || | ||||| ||||||||||||||||| |||||||||||||||    
T  7570 ctcggtaacatagtctttgtccttgccgataaagaaacaacatacatcaagaaatata 7627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 87; Significance: 9e-42; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 87; E-Value: 9e-42
Query Start/End: Original strand, 5 - 227
Target Start/End: Original strand, 32412177 - 32412399
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    ||||||||||||| |||||||||||||||| |||||  |||||||  ||||  || ||   ||||||||| ||||||| |||||||| ||||||||||||    
T  32412177 catgcattccaagtttgttattcttttcaatttttacaaggcttcgttctacgagaaccgttattccaatgtcagcataaagtccacgcccatttagtat 32412276  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagcttattttt 204  Q
    ||  |||||||| || || ||||| |||||||||||| |||| |  ||||||||||||| ||||||||||| ||||| |||||| ||| |||||||| ||    
T  32412277 cttggtaacataggccctgtccttgccgataaagaaaaaacatatgtcaagaaatatatccttttccatatcatcctttaaaccgtcatagcttattctt 32412376  T
Q  205 agtttctcgtgtatttgatcatt 227  Q
    |||||||| |||| ||| |||||    
T  32412377 agtttctcttgtacttggtcatt 32412399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 82; E-Value: 9e-39
Query Start/End: Original strand, 5 - 162
Target Start/End: Original strand, 6907064 - 6907221
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    ||||||||||||||||||||||||||||||||||||  ||||| |||||||| || ||  ||||||| ||| |||||  ||||||||| || ||||||||    
T  6907064 catgcattccaagcttgttattcttttcaacttttaaaaggctcctctctatgaggacagctattcctataccagcaaaaagtccacaaccgtttagtat 6907163  T
Q  105 ctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatata 162  Q
    ||| ||||||||  |||| ||||| ||||||||||||||||| |||||||||||||||    
T  6907164 ctcggtaacatagtctctgtccttgccgataaagaaacaacatacatcaagaaatata 6907221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 67; Significance: 8e-30; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 67; E-Value: 8e-30
Query Start/End: Original strand, 5 - 190
Target Start/End: Original strand, 14768131 - 14768317
Alignment:
Q  5 catgcattccaagcttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtat 104  Q
    ||||||||  |||||||||||||||| ||||||||| |||||| |  ||||| || ||   ||||||||||||||||| ||||||||| ||||||| |||    
T  14768131 catgcatttgaagcttgttattctttacaacttttaagaggctccgttctatgaggacagatattccaatatcagcataaagtccacatccatttaatat 14768230  T
Q  105 ctctgtaac-ataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccat 190  Q
    |||||||||  || ||||||||||| || ||||||||| |||| |  ||||||||||||| |||||  | || ||||||||||||||    
T  14768231 ctctgtaacgttaggctctatccttgccaataaagaaaaaacatatgtcaagaaatatatccttttttaaatcatcctctaaaccat 14768317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 18 - 197
Target Start/End: Original strand, 8372957 - 8373136
Alignment:
Q  18 cttgttattcttttcaacttttaggaggcttctctctatcagcacttctattccaatatcagcatgaagtccacacccatttagtatctctgtaacataa 117  Q
    |||||||||||| |||||||||| |||||| | |||||| || ||   || |||||||||||||||||||||||| ||||| || |||||||| |||| |    
T  8372957 cttgttattcttatcaacttttatgaggctacgctctataagaacagatactccaatatcagcatgaagtccacaaccattaaggatctctgtgacatca 8373056  T
Q  118 gctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaagct 197  Q
     |||| | ||| || || ||||||||||| |  ||||||||||||| ||||||  ||| ||| |||||||||||| ||||    
T  8373057 actctgttctttccaatgaagaaacaacatatgtcaagaaatatatccttttctgtataatcttctaaaccatcatagct 8373136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 95 - 197
Target Start/End: Original strand, 31060156 - 31060258
Alignment:
Q  95 catttagtatctctgtaacataagctctatccttaccgataaagaaacaacagacatcaagaaatatattcttttccatatgatcctctaaaccatcaaa 194  Q
    |||| |||||||||||||||| |||||| | ||| || || ||||||||||| |  |||| |||||||| ||||  ||||| ||| ||||||||||| ||    
T  31060156 cattaagtatctctgtaacatcagctctgttctttccaatgaagaaacaacatatgtcaaaaaatatatcctttaacatataatcttctaaaccatcgaa 31060255  T
Q  195 gct 197  Q
    |||    
T  31060256 gct 31060258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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