View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8050_high_20 (Length: 251)

Name: NF8050_high_20
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8050_high_20
NF8050_high_20
[»] chr3 (33 HSPs)
chr3 (44-237)||(53827560-53827754)
chr3 (87-221)||(19866734-19866869)
chr3 (123-221)||(42381616-42381715)
chr3 (93-221)||(34086788-34086916)
chr3 (44-194)||(47064892-47065043)
chr3 (126-221)||(42994876-42994972)
chr3 (115-221)||(7666932-7667039)
chr3 (115-221)||(15041976-15042083)
chr3 (96-221)||(42950939-42951065)
chr3 (136-221)||(6162674-6162759)
chr3 (113-221)||(44836446-44836555)
chr3 (144-221)||(42993567-42993644)
chr3 (144-221)||(42947376-42947453)
chr3 (144-221)||(53814561-53814638)
chr3 (145-221)||(15040682-15040758)
chr3 (123-221)||(16931447-16931546)
chr3 (44-105)||(44836358-44836419)
chr3 (136-196)||(50663901-50663961)
chr3 (136-221)||(3860831-3860915)
chr3 (144-221)||(35485244-35485321)
chr3 (144-196)||(34082865-34082917)
chr3 (146-221)||(16967985-16968060)
chr3 (146-221)||(44833471-44833546)
chr3 (150-192)||(11342920-11342962)
chr3 (143-221)||(19872140-19872218)
chr3 (144-213)||(2325561-2325630)
chr3 (144-196)||(7665759-7665811)
chr3 (158-221)||(4969876-4969939)
chr3 (144-194)||(53824318-53824368)
chr3 (177-222)||(13843626-13843671)
chr3 (155-228)||(40517534-40517607)
chr3 (149-194)||(54528961-54529006)
chr3 (150-190)||(2652942-2652982)
[»] chr1 (31 HSPs)
chr1 (44-221)||(50069133-50069311)
chr1 (93-221)||(33403074-33403203)
chr1 (144-221)||(39650197-39650274)
chr1 (93-198)||(35577472-35577578)
chr1 (44-168)||(45688382-45688506)
chr1 (44-221)||(11821161-11821337)
chr1 (146-221)||(45691050-45691125)
chr1 (95-213)||(47488977-47489096)
chr1 (147-221)||(3792561-3792635)
chr1 (144-221)||(28446530-28446607)
chr1 (150-221)||(45691196-45691267)
chr1 (150-221)||(45691338-45691409)
chr1 (115-195)||(28442949-28443030)
chr1 (136-221)||(48025557-48025642)
chr1 (144-221)||(33617645-33617722)
chr1 (145-194)||(45688336-45688385)
chr1 (145-214)||(50065486-50065555)
chr1 (144-195)||(35563532-35563583)
chr1 (93-195)||(49033679-49033781)
chr1 (144-221)||(28475982-28476059)
chr1 (149-210)||(35391487-35391548)
chr1 (145-221)||(28474793-28474869)
chr1 (144-196)||(35563386-35563438)
chr1 (44-105)||(47488886-47488949)
chr1 (149-191)||(37260918-37260960)
chr1 (144-221)||(33401409-33401486)
chr1 (44-96)||(17696335-17696387)
chr1 (149-216)||(35392109-35392176)
chr1 (149-187)||(2093846-2093884)
chr1 (161-194)||(5602972-5603005)
chr1 (149-221)||(2094367-2094439)
[»] chr5 (28 HSPs)
chr5 (44-221)||(40008713-40008891)
chr5 (93-221)||(1975250-1975379)
chr5 (110-222)||(4845301-4845414)
chr5 (87-213)||(33144126-33144253)
chr5 (144-221)||(1974157-1974234)
chr5 (93-221)||(6702371-6702500)
chr5 (115-214)||(5504744-5504844)
chr5 (123-221)||(3458015-3458114)
chr5 (150-226)||(17644606-17644682)
chr5 (93-196)||(30491743-30491847)
chr5 (149-221)||(1145142-1145214)
chr5 (145-221)||(34016003-34016079)
chr5 (145-200)||(30489745-30489800)
chr5 (144-214)||(19401999-19402069)
chr5 (146-221)||(759161-759236)
chr5 (144-217)||(6706035-6706108)
chr5 (121-221)||(19399491-19399592)
chr5 (149-193)||(33037386-33037430)
chr5 (143-221)||(38739388-38739466)
chr5 (144-221)||(28677887-28677964)
chr5 (146-211)||(40017354-40017419)
chr5 (149-221)||(6158948-6159019)
chr5 (153-221)||(6269237-6269305)
chr5 (149-221)||(11135742-11135814)
chr5 (44-105)||(3458100-3458161)
chr5 (146-198)||(4846929-4846982)
chr5 (144-193)||(5506691-5506740)
chr5 (149-221)||(17636345-17636417)
[»] chr4 (37 HSPs)
chr4 (44-221)||(33164404-33164582)
chr4 (77-221)||(28798077-28798222)
chr4 (44-193)||(36217899-36218049)
chr4 (93-221)||(24972391-24972520)
chr4 (77-193)||(53267733-53267850)
chr4 (95-221)||(12572769-12572896)
chr4 (93-221)||(40450932-40451061)
chr4 (87-221)||(12586185-12586321)
chr4 (121-198)||(42099502-42099580)
chr4 (144-226)||(46817432-46817514)
chr4 (93-221)||(36498907-36499036)
chr4 (96-197)||(55312094-55312196)
chr4 (44-105)||(46817363-46817424)
chr4 (123-221)||(36172166-36172265)
chr4 (144-194)||(24974146-24974196)
chr4 (145-221)||(34235705-34235781)
chr4 (115-221)||(636554-636661)
chr4 (146-221)||(47043991-47044066)
chr4 (115-221)||(55523726-55523833)
chr4 (144-214)||(36174579-36174649)
chr4 (148-221)||(28796621-28796694)
chr4 (144-216)||(36501865-36501937)
chr4 (144-196)||(53265818-53265870)
chr4 (44-94)||(12572699-12572749)
chr4 (136-194)||(51718202-51718260)
chr4 (149-194)||(27992143-27992188)
chr4 (149-194)||(38676967-38677012)
chr4 (115-215)||(40923383-40923484)
chr4 (148-221)||(55527917-55527990)
chr4 (165-221)||(12572429-12572485)
chr4 (144-204)||(23283232-23283292)
chr4 (145-200)||(33161652-33161707)
chr4 (44-105)||(55312225-55312286)
chr4 (144-196)||(12586798-12586849)
chr4 (136-192)||(38677654-38677710)
chr4 (144-216)||(40312794-40312866)
chr4 (144-216)||(40322870-40322942)
[»] chr2 (19 HSPs)
chr2 (44-192)||(22492476-22492625)
chr2 (44-222)||(12969163-12969341)
chr2 (95-198)||(42119181-42119285)
chr2 (44-221)||(37892907-37893085)
chr2 (93-221)||(11573634-11573763)
chr2 (144-221)||(22496076-22496153)
chr2 (144-216)||(11712964-11713036)
chr2 (123-194)||(18387269-18387341)
chr2 (143-221)||(8273246-8273324)
chr2 (93-198)||(30760178-30760284)
chr2 (44-105)||(42119313-42119374)
chr2 (144-221)||(18394970-18395047)
chr2 (144-221)||(12967271-12967349)
chr2 (119-200)||(24928680-24928762)
chr2 (96-195)||(939586-939686)
chr2 (145-221)||(2154263-2154339)
chr2 (119-221)||(25678273-25678376)
chr2 (150-195)||(8277394-8277439)
chr2 (77-105)||(18387346-18387374)
[»] chr8 (13 HSPs)
chr8 (44-215)||(33800397-33800569)
chr8 (143-221)||(33220786-33220864)
chr8 (93-221)||(34276193-34276322)
chr8 (87-198)||(28707087-28707197)
chr8 (123-221)||(43640951-43641050)
chr8 (144-221)||(5967237-5967314)
chr8 (115-221)||(23558953-23559060)
chr8 (44-105)||(28707006-28707067)
chr8 (143-221)||(34279560-34279638)
chr8 (136-195)||(9384643-9384702)
chr8 (144-221)||(4640795-4640872)
chr8 (163-221)||(28703882-28703940)
chr8 (177-221)||(9418588-9418632)
[»] chr7 (21 HSPs)
chr7 (44-216)||(26604072-26604245)
chr7 (93-221)||(20379616-20379745)
chr7 (44-195)||(30359730-30359883)
chr7 (93-214)||(38791996-38792118)
chr7 (92-197)||(46302191-46302297)
chr7 (123-221)||(31823590-31823689)
chr7 (123-192)||(48221676-48221746)
chr7 (144-221)||(1537246-1537323)
chr7 (117-221)||(44552674-44552779)
chr7 (144-216)||(5172-5244)
chr7 (144-221)||(19365395-19365472)
chr7 (145-221)||(38790885-38790962)
chr7 (144-221)||(26502431-26502508)
chr7 (144-221)||(26590206-26590283)
chr7 (144-196)||(38386200-38386252)
chr7 (136-194)||(26009397-26009455)
chr7 (167-221)||(42548162-42548216)
chr7 (60-105)||(2355590-2355634)
chr7 (44-105)||(20379529-20379590)
chr7 (161-194)||(25428759-25428792)
chr7 (184-221)||(40917721-40917758)
[»] scaffold0041 (2 HSPs)
scaffold0041 (95-221)||(24315-24442)
scaffold0041 (184-221)||(55337-55374)
[»] chr6 (16 HSPs)
chr6 (136-221)||(35060887-35060972)
chr6 (144-200)||(14830414-14830470)
chr6 (143-222)||(4321737-4321816)
chr6 (115-221)||(17436037-17436144)
chr6 (144-221)||(14153355-14153432)
chr6 (121-197)||(14154553-14154630)
chr6 (143-221)||(31522534-31522612)
chr6 (144-221)||(32274185-32274262)
chr6 (44-105)||(35060826-35060887)
chr6 (144-221)||(17436541-17436618)
chr6 (144-214)||(16444276-16444347)
chr6 (144-221)||(32275771-32275848)
chr6 (144-192)||(31483673-31483721)
chr6 (145-194)||(4319112-4319161)
chr6 (149-194)||(7203956-7204001)
chr6 (149-221)||(806546-806618)
[»] scaffold1763 (2 HSPs)
scaffold1763 (95-221)||(316-441)
scaffold1763 (44-105)||(246-307)
[»] scaffold1063 (1 HSPs)
scaffold1063 (143-221)||(1476-1554)
[»] scaffold0163 (1 HSPs)
scaffold0163 (155-194)||(35804-35843)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 1e-89; HSPs: 33)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 1e-89
Query Start/End: Original strand, 44 - 237
Target Start/End: Original strand, 53827560 - 53827754
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgct 142  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||| |||||||    
T  53827560 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttgtgttcctcttataactagcgcaacttaagtcacgct 53827659  T
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatttatatattattatttt 237  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||||    
T  53827660 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcagaattcatatattattatttt 53827754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 19866869 - 19866734
Alignment:
Q  87 cacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttg 185  Q
    ||||| |||||||||||||| | |||  |||||||||||||||  |||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||    
T  19866869 cacgttgcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcatttttgacttttactttg 19866770  T
Q  186 ggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||| ||| ||||||||||| ||||    
T  19866769 ggaatgagcgatactgtttgggtaatgagcagaatt 19866734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 42381715 - 42381616
Alignment:
Q  123 tagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||  | ||||||||||||||| ||||    
T  42381715 tagcgcaacttaagtcacgctacgcatgttaacatgcgtaagggcattttggacatttactttggaaatgagcgatgttgtttaggtaatgagcagaatt 42381616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 34086788 - 34086916
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||||||| | |||  |||||||||||||||  |||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||    
T  34086788 gcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcattttcgacttttactttgggaatg 34086887  T
Q  192 agcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||| ||| || |||||||| ||||    
T  34086888 agcgatactgttt-ggaaatgagcagaatt 34086916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 194
Target Start/End: Complemental strand, 47065043 - 47064892
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaatca--cgc 141  Q
    |||||||||| |||  |||||||||||||||| ||||| ||| |||||||||||||||||||| | || || ||||||||||||  | |||| ||  |||    
T  47065043 ttgaaaatgaggcagaatgaggttctgcctgggctaattacaacacgtagcgtgacttaagttacgtttctattataactagcgtgagttaa-catgcgc 47064945  T
Q  142 tacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    |||| | ||||||||||||||| ||||||||||| ||||||||||||||||||    
T  47064944 tacgtaagttaacatgcgtaggagcattttggacttttactttgggaatgagc 47064892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 126 - 221
Target Start/End: Original strand, 42994876 - 42994972
Alignment:
Q  126 cgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||| |||||||| ||||||||||||||  | ||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||    
T  42994876 cgcaacttaagtcacgctatgcatgttaacatgcccatgggcattttagacatttactttgggaatgagcgatactatttaggtaatgagcagaatt 42994972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 7666932 - 7667039
Alignment:
Q  115 cttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatga 213  Q
    |||||||||||||||  |||| |||||||| ||| ||||||||||||||||||||||| ||| |||| ||||||||||||||||||| ||| ||||||||    
T  7666932 cttataactagcgcatgttaactcacgctatgcaagttaacatgcgtaggggcatttttgacttttattttgggaatgagcgatactgtttgggtaatga 7667031  T
Q  214 gcaaaatt 221  Q
    ||||||||    
T  7667032 gcaaaatt 7667039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 15041976 - 15042083
Alignment:
Q  115 cttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatga 213  Q
    |||||||||||||||  |||| |||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||||| | ||| ||||||||    
T  15041976 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcattttcgacttttactttgggaatgagcgatattgtttgggtaatga 15042075  T
Q  214 gcaaaatt 221  Q
    ||| ||||    
T  15042076 gcagaatt 15042083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 96 - 221
Target Start/End: Original strand, 42950939 - 42951065
Alignment:
Q  96 tgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    ||||||||||| | || ||||||||||||||||||||||| ||||||||| ||||||||||| |||| ||||| | ||||||||||||||||||||||||    
T  42950939 tgacttaagttacgtttctcttataactagcgcaacttaaatcacgctacacatgttaacatacgtatgggcaatatggacatttactttgggaatgagc 42951038  T
Q  195 gatactatttaggtaatgagcaaaatt 221  Q
    |  | |||||  |||||||||| ||||    
T  42951039 ggaagtatttgagtaatgagcagaatt 42951065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 6162674 - 6162759
Alignment:
Q  136 tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||  || |||| ||||||||||| ||||    
T  6162674 tcacgctacgcatgttaacatgcgtaggggcattttggacttttactttgggaatgagcggaaccatttgggtaatgagcagaatt 6162759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 113 - 221
Target Start/End: Original strand, 44836446 - 44836555
Alignment:
Q  113 ctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaat 211  Q
    ||||||||||||||||||||||| ||||||||| |||||||||||||||||||||| | |||||||||||||| | ||||||||  || |||||| ||||    
T  44836446 ctcttataactagcgcaacttaagtcacgctacacatgttaacatgcgtaggggcaatatggacatttactttagaaatgagcggaaccatttagataat 44836545  T
Q  212 gagcaaaatt 221  Q
    ||||| ||||    
T  44836546 gagcagaatt 44836555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 42993644 - 42993567
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||| || |||||||||| ||| ||||||||||||||||||||||||| |||||||| |||||| ||||    
T  42993644 cgcatgttaacatacgcaggggcatttaggaaatttactttgggaatgagcgatactctttaggtagtgagcagaatt 42993567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 42947453 - 42947376
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||||||| ||||||||||| ||||||||| ||||||| || |  |||||||||||||||| ||||    
T  42947453 cgcatgttaacatgcgtaggagcattttggacttttactttgagaatgagtgaaatcatttaggtaatgagcagaatt 42947376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 53814561 - 53814638
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||| |||||||||||||||||||||||  ||||||||||||||||||||||  | |||| ||||||||||| ||||    
T  53814561 cgcatattaacatgcgtaggggcattttgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaatt 53814638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 15040758 - 15040682
Alignment:
Q  145 gcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||||||||||||  | ||||||||||||||||||||||  | |||| ||||||||||| ||||    
T  15040758 gcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcagaatt 15040682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 16931546 - 16931447
Alignment:
Q  123 tagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||| ||||| |||||||||||||||||| || |  || ||||||||||||||| |||| ||||||||||||||   ||||||||| ||||    
T  16931546 tagcgcaacttaaatcacggtacgcatgttaacatgcgcagagatatattggacatttactttaggaacgagcgatactatttgaataatgagcagaatt 16931447  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 44836358 - 44836419
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagt 105  Q
    |||||||||| |||  |||||||||||||||||||||| |||||||| ||||||||||||||    
T  44836358 ttgaaaatgaggcagaatgaggttctgcctggactaattacagcacgcagcgtgacttaagt 44836419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 136 - 196
Target Start/End: Complemental strand, 50663961 - 50663901
Alignment:
Q  136 tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcga 196  Q
    ||||||||||   |||||||||||||||||||||||||  |||||||||||||||||||||    
T  50663961 tcacgctacgtgagttaacatgcgtaggggcattttggttatttactttgggaatgagcga 50663901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 3860831 - 3860915
Alignment:
Q  136 tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||| |||||||| ||||||| | ||||  || ||||||||| |||||||||||||| |||| ||||| |||||||||    
T  3860831 tcacgctacgcaagttaacatacgtaggg-cgttttcaacttttactttgagaatgagcgatactgtttaagtaattagcaaaatt 3860915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 35485321 - 35485244
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||| | |||||||||||  |||||||||||  |||||||||||||| ||| | ||||||||| ||||    
T  35485321 cgcatgttaacatgtgcaggggcattttaaacatttactttaagaatgagcgatactgtttggataatgagcagaatt 35485244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 34082917 - 34082865
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcga 196  Q
    |||||||||||||||||||| ||||||||  |||||||||||| |||||||||    
T  34082917 cgcatgttaacatgcgtaggagcattttgatcatttactttggaaatgagcga 34082865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 16967985 - 16968060
Alignment:
Q  146 catgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||| |||||||| ||||| |||||||| ||| |||||||| |||||  |||| |||||||||| ||||    
T  16967985 catgttaacatacgtaggggtattttagacatttattttaggaatgagtgatacggtttaagtaatgagcagaatt 16968060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 44833546 - 44833471
Alignment:
Q  146 catgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||| ||||||||||||||||||||| |||||||||| ||| | ||  || |||| ||||||||||| ||||    
T  44833546 catgttaatatgcgtaggggcattttggacttttactttggaaataaacggaaccatttgggtaatgagcagaatt 44833471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 150 - 192
Target Start/End: Complemental strand, 11342962 - 11342920
Alignment:
Q  150 ttaacatgcgtaggggcattttggacatttactttgggaatga 192  Q
    ||||||||||||||||| |||||||| ||||||||||||||||    
T  11342962 ttaacatgcgtaggggctttttggacttttactttgggaatga 11342920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 19872140 - 19872218
Alignment:
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||||||| |||||||| | |||||| ||| |||||||||||    |||||||||||| ||| ||||    
T  19872140 acgcatgttaacatgcgtagaggcattttagtcatttattttaggaatgagcgaattcatttaggtaatgggcagaatt 19872218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 213
Target Start/End: Original strand, 2325561 - 2325630
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatga 213  Q
    ||||||||||||||||||||| ||||||  || |||||||||||||||  ||| || |||||| ||||||    
T  2325561 cgcatgttaacatgcgtagggacattttaaacttttactttgggaatggacgaaaccatttagataatga 2325630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 7665811 - 7665759
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcga 196  Q
    ||||||||||||||| || |||||||| || ||||||||||| ||||||||||    
T  7665811 cgcatgttaacatgcataagggcatttcggtcatttactttgcgaatgagcga 7665759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 4969939 - 4969876
Alignment:
Q  158 cgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||| ||||| ||| |||||||||||||||||||  || |||| ||||||||||| ||||    
T  4969939 cgtaggggtattttcgacttttactttgggaatgagcggaaccatttgggtaatgagcagaatt 4969876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 194
Target Start/End: Complemental strand, 53824368 - 53824318
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    |||||||||||||||| | ||||||||  | ||||||||||||||||||||    
T  53824368 cgcatgttaacatgcgcatgggcatttcagtcatttactttgggaatgagc 53824318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 177 - 222
Target Start/End: Original strand, 13843626 - 13843671
Alignment:
Q  177 tttactttgggaatgagcgatactatttaggtaatgagcaaaattt 222  Q
    |||||||||||||||||||| || |||| ||||||||||| |||||    
T  13843626 tttactttgggaatgagcgaaaccatttgggtaatgagcagaattt 13843671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 155 - 228
Target Start/End: Original strand, 40517534 - 40517607
Alignment:
Q  155 atgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatttatatat 228  Q
    ||||||||||| || |||| |||||||||| ||||||||||| ||  ||| ||||| ||||| |||| ||||||    
T  40517534 atgcgtaggggtatcttggtcatttactttaggaatgagcgaaaccgtttgggtaaagagcagaattcatatat 40517607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 54528961 - 54529006
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    ||||||||| ||||||| ||||||||||||||| ||| ||||||||    
T  54528961 gttaacatgtgtaggggtattttggacatttacattgagaatgagc 54529006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 150 - 190
Target Start/End: Original strand, 2652942 - 2652982
Alignment:
Q  150 ttaacatgcgtaggggcattttggacatttactttgggaat 190  Q
    |||||||||||||||| ||||||  ||||||||||||||||    
T  2652942 ttaacatgcgtaggggtattttgatcatttactttgggaat 2652982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 115; Significance: 2e-58; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 50069133 - 50069311
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgct 142  Q
    |||||||||||||| ||||||||||||||||| ||||||||| ||| |||||||||||||||| | |||| ||||||||||| ||||||||| |||||||    
T  50069133 ttgaaaatgatgcatgatgaggttctgcctgggctaataacaacacatagcgtgacttaagttgcgttccgcttataactagtgcaacttaactcacgct 50069232  T
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||| ||||||||||||| ||||||||||||||||||||||||||||||||||||| || ||| ||||||||||| ||||    
T  50069233 acgtatgttaacatgcgcaggggcattttggacatttactttgggaatgagcgatgctgtttgggtaatgagcagaatt 50069311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 33403074 - 33403203
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||||||| | |||  |||||||||||| ||  |||| ||||| |||||| ||||||||||||||||||||||| ||| |||||||||| ||||    
T  33403074 gcgtgacttaagttacgttctccttataactagcacatgttaactcacgttacgcaagttaacatgcgtaggggcattttcgacttttactttggaaatg 33403173  T
Q  192 agcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||| ||| ||||||||||| ||||    
T  33403174 agcgatactgtttgggtaatgagcataatt 33403203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 39650274 - 39650197
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||||| ||||    
T  39650274 cgcatgttaacatgcgtaggggcattttggacatttactttaggaatgagcgaaaccatttaggtaatgagcagaatt 39650197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 198
Target Start/End: Original strand, 35577472 - 35577578
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||||||| | |||  |||||||||||||||  |||| |||||||||||| ||||||||  ||||||||||||| ||| |||||||||||||||    
T  35577472 gcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctacgcaagttaacatatgtaggggcattttcgacttttactttgggaatg 35577571  T
Q  192 agcgata 198  Q
    |||||||    
T  35577572 agcgata 35577578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 44 - 168
Target Start/End: Complemental strand, 45688506 - 45688382
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgct 142  Q
    |||||||||| |||  ||||||||||   ||| ||||| ||||||| |||||||||||||||| | || || |||||||||||||| ||||| ||| |||    
T  45688506 ttgaaaatgaggcagaatgaggttctatttgggctaattacagcacatagcgtgacttaagttacgtttctattataactagcgcagcttaagtca-gct 45688408  T
Q  143 acgcatgttaacatgcgtaggggcat 168  Q
    ||||||||||||||||||||||||||    
T  45688407 acgcatgttaacatgcgtaggggcat 45688382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 11821337 - 11821161
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataacta--gcgcaacttaa-tcacg 140  Q
    ||||||||||||||  |||||||||||    | ||||| || ||||||||||||||||||||| | || ||||||||||||  |||||  |||| ||||     
T  11821337 ttgaaaatgatgcagaatgaggttctg----ggctaattactgcacgtagcgtgacttaagttacgtttctcttataactatagcgcatgttaactcaca 11821242  T
Q  141 ctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
     |||| | |||||||||| |||| ||||||||||| |||||||||||||||| ||| || |||| | ||||||||| ||||    
T  11821241 atacgtaagttaacatgcataggagcattttggacttttactttgggaatgaacgaaaccatttggataatgagcagaatt 11821161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 45691050 - 45691125
Alignment:
Q  146 catgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||| ||||||||||||||||| |||||||||||||||||||| || ||||  |||||||||||||||    
T  45691050 catgttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaatt 45691125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 95 - 213
Target Start/End: Original strand, 47488977 - 47489096
Alignment:
Q  95 gtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgag 193  Q
    ||||||||||||  ||||||||||||||||||||||||||| ||||| |||||||||||||||| | | | ||||||| |||||||| |||   ||||||    
T  47488977 gtgacttaagttgtattcctcttataactagcgcaacttaagtcacgttacgcatgttaacatgtgcaagagcattttagacatttattttaaaaatgag 47489076  T
Q  194 cgatactatttaggtaatga 213  Q
    ||||||| ||| | ||||||    
T  47489077 cgatactgtttggataatga 47489096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 147 - 221
Target Start/End: Complemental strand, 3792635 - 3792561
Alignment:
Q  147 atgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||| ||||||||||||| |||||||||| ||||||||| ||||||| ||||||||||| ||||    
T  3792635 atgttaacatgcgtaagggcattttggacttttactttggaaatgagcgaaactatttgggtaatgagcagaatt 3792561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 28446530 - 28446607
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||||||||||||||  | ||||||||||||||||||||||  | |||| ||||||||||||||||    
T  28446530 cgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcgaatccatttgggtaatgagcaaaatt 28446607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 45691196 - 45691267
Alignment:
Q  150 ttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||| || ||||  |||||||||||||||    
T  45691196 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaatt 45691267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 150 - 221
Target Start/End: Original strand, 45691338 - 45691409
Alignment:
Q  150 ttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||| ||||||||||||||||| |||||||||||||||||||| || ||||  |||||||||||||||    
T  45691338 ttaacatgtgtaggggcattttggacttttactttgggaatgagcgaaaccatttgagtaatgagcaaaatt 45691409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 115 - 195
Target Start/End: Complemental strand, 28443030 - 28442949
Alignment:
Q  115 cttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcg 195  Q
    |||||||||||||||  |||| ||||||||| || |||||||||||||||||||||||  || |||||||||||||||||||    
T  28443030 cttataactagcgcatgttaactcacgctacacaagttaacatgcgtaggggcattttcaacttttactttgggaatgagcg 28442949  T

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Target: chr1; HSP #14
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 136 - 221
Target Start/End: Complemental strand, 48025642 - 48025557
Alignment:
Q  136 tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||| ||||||||||||| |||||||||  || | |||||||||||||||||||||| ||| ||||| ||||| ||||    
T  48025642 tcacgctacgcaagttaacatgcgtaagggcattttcaacttctactttgggaatgagcgatactgtttgggtaacgagcataatt 48025557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 33617722 - 33617645
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||| ||||||||||| || ||||||||||| ||||||||||  | |||| ||||||||||| ||||    
T  33617722 cgcatgttaacatgcataggggcatttcggtcatttactttgagaatgagcgaatccatttgggtaatgagcataatt 33617645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 45688385 - 45688336
Alignment:
Q  145 gcatgttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||    
T  45688385 gcatgttaacatgcgtaggggcattttgaacttttactttgggaatgagc 45688336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 145 - 214
Target Start/End: Complemental strand, 50065555 - 50065486
Alignment:
Q  145 gcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgag 214  Q
    ||||||||||||||| || ||||||| || ||||||||||||||||||||||| | |||| |||||||||    
T  50065555 gcatgttaacatgcgcagaggcatttcggtcatttactttgggaatgagcgattccattttggtaatgag 50065486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 144 - 195
Target Start/End: Complemental strand, 35563583 - 35563532
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcg 195  Q
    |||||||||||||||||||||||||||  | |||||||||||||||||||||    
T  35563583 cgcatgttaacatgcgtaggggcatttcagtcatttactttgggaatgagcg 35563532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 93 - 195
Target Start/End: Original strand, 49033679 - 49033781
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaatca-cgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||||||  | || |||||| ||||||||||  ||||| | ||||||||| |||||  ||||||| ||||||| ||||||||||||||||||||    
T  49033679 gcgtgacttaagtcacgtttctcttacaactagcgcatgttaattaacgctacgcaagttaaattgcgtagaggcattt-ggacatttactttgggaatg 49033777  T
Q  192 agcg 195  Q
    ||||    
T  49033778 agcg 49033781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 28475982 - 28476059
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||| |||||||||||| |  ||||||||||| |||||||||  || |||| ||||||||||| ||||    
T  28475982 cgcatgttaacatgtgtaggggcatttcgatcatttactttgagaatgagcggaaccatttgggtaatgagcagaatt 28476059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 149 - 210
Target Start/End: Complemental strand, 35391548 - 35391487
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaa 210  Q
    ||||||||||||| | | |||||||||||||||||||||||||| ||| || ||||||||||    
T  35391548 gttaacatgcgtatgagtattttggacatttactttgggaatgaacgaaaccatttaggtaa 35391487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 28474869 - 28474793
Alignment:
Q  145 gcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||||||||||||  | |||||| |||||||||||| ||  | |||| ||||||||||| ||||    
T  28474869 gcatgttaacatgcgtaggggcatttcagtcatttattttgggaatgagtgaatccatttgggtaatgagcagaatt 28474793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 35563438 - 35563386
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcga 196  Q
    |||||||||||||||| ||||||||||  | ||||||||||||||||||||||    
T  35563438 cgcatgttaacatgcgcaggggcatttcagtcatttactttgggaatgagcga 35563386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 47488886 - 47488949
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggacta--ataacagcacgtagcgtgacttaagt 105  Q
    ||||||||||||||  ||||||||||| |||| |||  ||||||||||||||||||||||||||    
T  47488886 ttgaaaatgatgcagaatgaggttctgactgggctataataacagcacgtagcgtgacttaagt 47488949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 149 - 191
Target Start/End: Original strand, 37260918 - 37260960
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||| |||||||||||||||||||||||||| |||||    
T  37260918 gttaacatgcataggggcattttggacatttactttgagaatg 37260960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 33401486 - 33401409
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||| || |||||||| || ||||||||||| ||||||||||  | ||||   ||||||||||||||    
T  33401486 cgcatgttaacatgcataagggcatttcggtcatttactttgagaatgagcgaatccatttgactaatgagcaaaatt 33401409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 96
Target Start/End: Complemental strand, 17696387 - 17696335
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgt 96  Q
    |||||||||| |||  |||||| |||||||||| |||||||||||||||||||    
T  17696387 ttgaaaatgaggcagaatgaggctctgcctggaataataacagcacgtagcgt 17696335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 149 - 216
Target Start/End: Original strand, 35392109 - 35392176
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagca 216  Q
    ||||||||||||||  | |||||| ||||||||||||||||||||| | || |||| ||||| |||||    
T  35392109 gttaacatgcgtagaagtattttgaacatttactttgggaatgagcaaaacaatttgggtaaagagca 35392176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 149 - 187
Target Start/End: Complemental strand, 2093884 - 2093846
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttggg 187  Q
    ||||||||||||||||| |||||||||||||| ||||||    
T  2093884 gttaacatgcgtaggggtattttggacatttattttggg 2093846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 5603005 - 5602972
Alignment:
Q  161 aggggcattttggacatttactttgggaatgagc 194  Q
    ||||||||||||| ||||||||||||||||||||    
T  5603005 aggggcattttggtcatttactttgggaatgagc 5602972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 2094367 - 2094439
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||| ||||||||||  ||||| |||||||||||||| |||||||   || |||| ||||||||||| ||||    
T  2094367 gttaatatgcgtagggatattttagacatttactttggaaatgagcagaacaatttgggtaatgagcagaatt 2094439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 111; Significance: 4e-56; HSPs: 28)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 44 - 221
Target Start/End: Complemental strand, 40008891 - 40008713
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgct 142  Q
    ||||||||||||||  |||||||| ||||||| |||||||||||| ||||||||||||||||| | ||||| ||||||| |||||||||||| |||||||    
T  40008891 ttgaaaatgatgcagaatgaggttttgcctgggctaataacagcaagtagcgtgacttaagttacgttccttttataaccagcgcaacttaagtcacgct 40008792  T
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||| | ||||||||||||||| ||||    
T  40008791 acgcatgttaacatgcgcaggggcattttagacatttactttgagaatgagcgataatgtttaggtaatgagcagaatt 40008713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 1975250 - 1975379
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||||||| | |||||||||||||||||||||||||| |||||||||||||||||||||||| | |||||||||||||||||||||||| ||||    
T  1975250 gcgtgacttaagttgcgttcctcttataactagcgcaacttaagtcacgctacgcatgttaacatgcgcatgggcattttggacatttactttggaaatg 1975349  T
Q  192 agcgatactatttaggtaatgagcaaaatt 221  Q
    ||| || || ||||| ||||||||| ||||    
T  1975350 agcaatgctgtttagataatgagcagaatt 1975379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 110 - 222
Target Start/End: Complemental strand, 4845414 - 4845301
Alignment:
Q  110 ttcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggt 208  Q
    ||||||||||||||||||||| |||| ||||||||| |||||||||||||| ||| ||||||| |||||||||||| |||||||||||||||||||   |    
T  4845414 ttcctcttataactagcgcaatttaagtcacgctacacatgttaacatgcgcaggagcattttagacatttactttaggaatgagcgatactatttgaat 4845315  T
Q  209 aatgagcaaaattt 222  Q
    |||||||| |||||    
T  4845314 aatgagcagaattt 4845301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 87 - 213
Target Start/End: Original strand, 33144126 - 33144253
Alignment:
Q  87 cacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttg 185  Q
    |||| |||||||||||||||   |||  |||||||||||||||  |||| |||| ||||||| |||||||||||||||||||||| || ||||||||||     
T  33144126 cacgcagcgtgacttaagttatgttctccttataactagcgcatgttaactcaccctacgcaagttaacatgcgtaggggcatttcggtcatttacttta 33144225  T
Q  186 ggaatgagcgatactatttaggtaatga 213  Q
    ||||||||||||| | ||| ||||||||    
T  33144226 ggaatgagcgatattgtttgggtaatga 33144253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 1974234 - 1974157
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| | ||||||||||| ||||    
T  1974234 cgcatgttaacatgcgcaagagcattttggacatttactttgggaatgagcgatactatctgggtaatgagcataatt 1974157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 6702500 - 6702371
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||||||  || | | ||||||||||| |||  |||| |||||||||||| ||||||||||||| ||||||||| ||| ||||||||| |||||    
T  6702500 gcgtgacttaagtcacactacccttataactagtgcatgttaactcacgctacgcaagttaacatgcgtatgggcatttttgacttttactttgagaatg 6702401  T
Q  192 agcgatactatttaggtaatgagcaaaatt 221  Q
    ||||| ||||||| || |||||||| ||||    
T  6702400 agcgaaactatttgggcaatgagcagaatt 6702371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 115 - 214
Target Start/End: Complemental strand, 5504844 - 5504744
Alignment:
Q  115 cttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatga 213  Q
    |||||||||||||||  |||| |||||||||||| |||||||||||||| |||||||| ||| |||||||| ||||||||||||| | ||| ||||||||    
T  5504844 cttataactagcgcatgttaactcacgctacgcaagttaacatgcgtagaggcattttcgacttttactttaggaatgagcgatagtgtttgggtaatga 5504745  T
Q  214 g 214  Q
    |    
T  5504744 g 5504744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 3458114 - 3458015
Alignment:
Q  123 tagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||| |||||||||||||||||||||| | | ||| |||||||||||||||||||| ||||||| ||||  ||| ||||||||||| ||||    
T  3458114 tagcgcaacttaagtcacgctacgcatgttaacatgtgcatgggtattttggacatttactttggaaatgagcaatacggtttcggtaatgagcagaatt 3458015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 150 - 226
Target Start/End: Original strand, 17644606 - 17644682
Alignment:
Q  150 ttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatttatat 226  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||  | |||| ||||||||||| |||| ||||    
T  17644606 ttaacatgcgtaggggtattttggacatttactttgggaatgagcgaatccatttcggtaatgagcacaattcatat 17644682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 93 - 196
Target Start/End: Original strand, 30491743 - 30491847
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    ||||||||||||||   |||  |||||||||||||||  |||| |||| ||||||| |||||||||||||||| |||||| ||| |||||||||||||||    
T  30491743 gcgtgacttaagttaagttctccttataactagcgcatgttaactcacactacgcaagttaacatgcgtagggacattttcgacttttactttgggaatg 30491842  T
Q  192 agcga 196  Q
    |||||    
T  30491843 agcga 30491847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 1145214 - 1145142
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||| |||||||||| |||||||||||||||||||||| ||| ||| | ||||||||| ||||    
T  1145214 gttaacatgcgtagaggcattttggtcatttactttgggaatgagcgaaactgtttggataatgagcataatt 1145142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 34016079 - 34016003
Alignment:
Q  145 gcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||| ||||||||||||  | ||||||||||||||||||||||  | |||||||||||||||| ||||    
T  34016079 gcatgttaacatgtgtaggggcatttcagtcatttactttgggaatgagcgaatccatttaggtaatgagcagaatt 34016003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 30489800 - 30489745
Alignment:
Q  145 gcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatact 200  Q
    ||||||||||||||||||||||||||| ||| |||||||||||||||| |||||||    
T  30489800 gcatgttaacatgcgtaggggcattttcgacttttactttgggaatgaacgatact 30489745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 19401999 - 19402069
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgag 214  Q
    |||||||||||||||||| ||||||||||||| ||||||||| ||||||| || || |||| |||||||||    
T  19401999 cgcatgttaacatgcgtatgggcattttggacttttactttgagaatgagtgaaaccatttgggtaatgag 19402069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 221
Target Start/End: Complemental strand, 759236 - 759161
Alignment:
Q  146 catgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||| | |||||| || |||||||||||||||||| |||  | |||||||||||||||| ||||    
T  759236 catgttaacatgcgtatgagcatttcggtcatttactttgggaatgatcgaatccatttaggtaatgagcagaatt 759161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 217
Target Start/End: Original strand, 6706035 - 6706108
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaa 217  Q
    |||||||||||||||||||||||||||  | |||||||||||| |||||||||  | |||| | ||||||||||    
T  6706035 cgcatgttaacatgcgtaggggcatttcagtcatttactttggaaatgagcgaatccatttggataatgagcaa 6706108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 221
Target Start/End: Complemental strand, 19399592 - 19399491
Alignment:
Q  121 actagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaa 219  Q
    ||||||||||||||| ||||||||| |||||||||||| ||| |  ||||||| || |||||||| |||||||| |  || |||||||||||  ||||||    
T  19399592 actagcgcaacttaagtcacgctacacatgttaacatgtgtatgtacattttgaacttttactttaggaatgagtggaaccatttaggtaataggcaaaa 19399493  T
Q  220 tt 221  Q
    ||    
T  19399492 tt 19399491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 149 - 193
Target Start/End: Original strand, 33037386 - 33037430
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgag 193  Q
    ||||||||| ||||||||||||||| |||||||||||||||||||    
T  33037386 gttaacatgtgtaggggcattttggtcatttactttgggaatgag 33037430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 38739466 - 38739388
Alignment:
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||| |||| |||||||||||||||  |||||||||||||  ||||||||| || |||| ||||| ||||| ||||    
T  38739466 acgcatgctaacttgcgtaggggcatttgtgacatttactttgacaatgagcgaaacgatttgggtaaagagcataatt 38739388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 28677964 - 28677887
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||| | |||||||| |||| || |||||||||| |||||||||||| | |||| | ||||||||| ||||    
T  28677964 cgcatgttaacttacgtaggggtatttcggtcatttactttaggaatgagcgattccatttggataatgagcagaatt 28677887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 146 - 211
Target Start/End: Original strand, 40017354 - 40017419
Alignment:
Q  146 catgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaat 211  Q
    ||||||||| |||||| || |||||| |||||||| |||||||||||| |||||| ||| ||||||    
T  40017354 catgttaacctgcgtaaggacattttagacatttattttgggaatgagtgatactctttgggtaat 40017419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 221
Target Start/End: Original strand, 6158948 - 6159019
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||| |||||||  ||||| ||||||||||||||||||||||||  | ||||| |||||||||| ||||    
T  6158948 gttaacatacgtagggt-attttagacatttactttgggaatgagcgaatccatttaagtaatgagcagaatt 6159019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 153 - 221
Target Start/End: Complemental strand, 6269305 - 6269237
Alignment:
Q  153 acatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||| |||| |||||||||||||||| |||  ||||||||||||| ||| | ||||||||| ||||    
T  6269305 acatgcgcagggacattttggacatttacattgaaaatgagcgatactgtttggataatgagcagaatt 6269237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 11135814 - 11135742
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||| ||||||| |||||| ||||| ||||||||| |  |||| ||||| ||||| ||||    
T  11135814 gttaacatgcgtaggggtattttggtcatttattttggaaatgagcgaaatcatttgggtaaagagcataatt 11135742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 3458161 - 3458100
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagt 105  Q
    |||||| |||||||  |||||||||||||||| |||||||||| || |||||  ||||||||    
T  3458161 ttgaaagtgatgcataatgaggttctgcctgggctaataacaggacatagcgcaacttaagt 3458100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 146 - 198
Target Start/End: Original strand, 4846929 - 4846982
Alignment:
Q  146 catgttaacatgcgtagg-ggcattttggacatttactttgggaatgagcgata 198  Q
    |||||||||||||| ||| || ||||| |||||||||||||| |||||||||||    
T  4846929 catgttaacatgcgcaggaggtattttagacatttactttggaaatgagcgata 4846982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 144 - 193
Target Start/End: Original strand, 5506691 - 5506740
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgag 193  Q
    ||||||| |||||||||||| |||||| |  |||||||||||||||||||    
T  5506691 cgcatgtcaacatgcgtaggagcatttcgatcatttactttgggaatgag 5506740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 17636417 - 17636345
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||| ||||||| ||||    |||||| |||||||||||||||  | |||||||||||||||| ||||    
T  17636417 gttaacatgtgtaggggtatttcaatcatttattttgggaatgagcgaatccatttaggtaatgagcagaatt 17636345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 111; Significance: 4e-56; HSPs: 37)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 33164404 - 33164582
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgct 142  Q
    ||||||||||||||  |||||||||||||||| |||||||||||| |||| |||||||||||| | || |||||||||||||| |||||||| |||||||    
T  33164404 ttgaaaatgatgcagaatgaggttctgcctgggctaataacagcatgtagtgtgacttaagttacgtttctcttataactagcacaacttaagtcacgct 33164503  T
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||  || |||| ||||||||||| ||||    
T  33164504 acgcatgttaacatgcgtaggggcattttggacatttactttgagaatgagcggaaccatttgggtaatgagcagaatt 33164582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 77 - 221
Target Start/End: Original strand, 28798077 - 28798222
Alignment:
Q  77 ctaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggac 175  Q
    |||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| |||| |||| |||||||||||| | |||||||||||||||    
T  28798077 ctaataacagcacgtagcgtgacttaagttacgttcctcttataactagcgcaacttaagtcacactacacatgttaacatgtgcaggggcattttggac 28798176  T
Q  176 atttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||| |||||||||||||| ||| ||||||||||| ||||    
T  28798177 atttactttgagaatgagcgatactgtttgggtaatgagcagaatt 28798222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 193
Target Start/End: Complemental strand, 36218049 - 36217899
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgct 142  Q
    |||||||||| |||  ||||||||||| |||| ||||| |||||||||||||||||||||||  | || ||||||||||||| |||  |||| |||||||    
T  36218049 ttgaaaatgaggcagaatgaggttctgtctgggctaatcacagcacgtagcgtgacttaagtcacgtttctcttataactagtgcatgttaactcacgct 36217950  T
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgag 193  Q
    ||| | ||||||||||||||||||||||||||| |||||||||||||||||    
T  36217949 acgtaagttaacatgcgtaggggcattttggacttttactttgggaatgag 36217899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 24972520 - 24972391
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||||||| | |||  |||||||||||||||  |||| |||||||||||| |||||||||||||||||  |||| ||| |||||||| ||||||    
T  24972520 gcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggtgtttttgacttttactttaggaatg 24972421  T
Q  192 agcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||| ||||||||||||||| ||||    
T  24972420 agcgatactgtttaggtaatgagcagaatt 24972391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 77 - 193
Target Start/End: Original strand, 53267733 - 53267850
Alignment:
Q  77 ctaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggac 175  Q
    ||||| ||||||||||||||||||||| |  |||| ||||||||||||||||||||||| |||||||||| |||||||||||||||||| || | || ||    
T  53267733 ctaattacagcacgtagcgtgacttaaatcacatttctcttataactagcgcaacttaagtcacgctacgtatgttaacatgcgtagggacaatatgaac 53267832  T
Q  176 atttactttgggaatgag 193  Q
    ||||||||||| ||||||    
T  53267833 atttactttggaaatgag 53267850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 12572769 - 12572896
Alignment:
Q  95 gtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgag 193  Q
    |||||||||||| | |||||||||||||||||||||| ||| ||||| || |||| |||||||||| ||||||||||||||||||||||||| ||||||     
T  12572769 gtgacttaagttgcgttcctcttataactagcgcaacataagtcacgatatgcatattaacatgcgcaggggcattttggacatttactttgagaatgaa 12572868  T
Q  194 cgatactatttaggtaatgagcaaaatt 221  Q
    ||||||| ||| | | ||||||| ||||    
T  12572869 cgatactgtttggatgatgagcagaatt 12572896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 40451061 - 40450932
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||||||  |||||  ||||| |||| ||||  |||| ||| ||||| || ||||||||||||||||||||||| ||| |||||||||||||||    
T  40451061 gcgtgacttaagtcacattctccttattactaacgcatgttaactcaagctacacaagttaacatgcgtaggggcattttcgacttttactttgggaatg 40450962  T
Q  192 agcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||| ||||||||||||||| ||||    
T  40450961 agcgatactgtttaggtaatgagcagaatt 40450932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 87 - 221
Target Start/End: Complemental strand, 12586321 - 12586185
Alignment:
Q  87 cacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttg-gacatttacttt 184  Q
    ||||| |||||||||||||| | |||  |||||||||||||||  |||| |||||||| ||| |||||||||| ||||||||||||  ||| ||||||||    
T  12586321 cacgttgcgtgacttaagttacgttctccttataactagcgcatgttaactcacgctatgcaagttaacatgcataggggcatttttcgacttttacttt 12586222  T
Q  185 gggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||| || | ||||||||||||||| ||||    
T  12586221 gggaatgagcggtattgtttaggtaatgagcagaatt 12586185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 121 - 198
Target Start/End: Original strand, 42099502 - 42099580
Alignment:
Q  121 actagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgata 198  Q
    ||||||||||||||| |||||||||||||||||||||||| ||| | |||||||||||||||||||| |||||||||||    
T  42099502 actagcgcaacttaagtcacgctacgcatgttaacatgcgcaggtgtattttggacatttactttggaaatgagcgata 42099580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 144 - 226
Target Start/End: Original strand, 46817432 - 46817514
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatttatat 226  Q
    ||||||||||||||||||||||||||||| |||||||||||  |||||||||||||| || |||||||||||| |||| ||||    
T  46817432 cgcatgttaacatgcgtaggggcattttgaacatttactttaagaatgagcgatactgttcaggtaatgagcagaattcatat 46817514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 36499036 - 36498907
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    ||||||||||| || | |||  |||||||||||||||  |||| |||||||| ||| |||||||||| ||||||||||||  || |||||||||||||||    
T  36499036 gcgtgacttaaattacgttctccttataactagcgcatgttaactcacgctatgcaagttaacatgcataggggcattttcaacttttactttgggaatg 36498937  T
Q  192 agcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||| |||  |||||||||| ||||    
T  36498936 agcgatactgtttgagtaatgagcagaatt 36498907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 96 - 197
Target Start/End: Complemental strand, 55312196 - 55312094
Alignment:
Q  96 tgacttaagttccattcctcttataactagcgcaactt-aatcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    ||||||||||| | |||||||||||||||||||||||| ||||| ||||| |||||||| |||   | || ||||||||| |||||||||||||||||||    
T  55312196 tgacttaagttgcgttcctcttataactagcgcaacttaaatcatgctacacatgttaatatgttcatggacattttggatatttactttgggaatgagc 55312097  T
Q  195 gat 197  Q
    |||    
T  55312096 gat 55312094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 46817363 - 46817424
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagt 105  Q
    ||||||||||||||  |||||||| |||||||||||||||||||| ||||||||||||||||    
T  46817363 ttgaaaatgatgcagaatgaggttttgcctggactaataacagcatgtagcgtgacttaagt 46817424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 36172265 - 36172166
Alignment:
Q  123 tagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||| |||||||| |||| | |||||||||||||| | |||||| ||||||||| ||||||||||||||||| |  ||||||| ||||||||||| ||||    
T  36172265 tagcacaacttaagtcacaccacgcatgttaacatacataggggtattttggacttttactttgggaatgagtggaactatttgggtaatgagcagaatt 36172166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 194
Target Start/End: Original strand, 24974146 - 24974196
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||    
T  24974146 cgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagc 24974196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 145 - 221
Target Start/End: Original strand, 34235705 - 34235781
Alignment:
Q  145 gcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||| |||||||| || |||||||||| ||||||||||  || |||| ||||||||||| ||||    
T  34235705 gcatgttaacatgcgtatgggcatttcggtcatttactttaggaatgagcggaaccatttgggtaatgagcataatt 34235781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 636554 - 636661
Alignment:
Q  115 cttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatga 213  Q
    ||||||| |||||||  |||| |||||||||||| ||||||||||| | |||||||||  |  |||||||||| ||| ||||||||| ||| ||||||||    
T  636554 cttataattagcgcattttaactcacgctacgcaagttaacatgcgcatgggcattttcaatttttactttggaaataagcgatactgtttgggtaatga 636653  T
Q  214 gcaaaatt 221  Q
    ||| ||||    
T  636654 gcataatt 636661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 146 - 221
Target Start/End: Original strand, 47043991 - 47044066
Alignment:
Q  146 catgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||| |||||||||||| | ||||||||| ||||||| ||||||  |||  |||||||||||||||    
T  47043991 catgttaacatgcgcaggggcattttgaatatttactttaggaatgaacgatacagtttgagtaatgagcaaaatt 47044066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 55523833 - 55523726
Alignment:
Q  115 cttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatga 213  Q
    |||||||||||||||  |||| ||| | ||| || ||||||||||||||||||||||| ||| |||||||||  ||||||||||| | ||| | ||||||    
T  55523833 cttataactagcgcatgttaactcaagatacacaagttaacatgcgtaggggcattttcgacttttactttgaaaatgagcgataatgtttggataatga 55523734  T
Q  214 gcaaaatt 221  Q
    ||| ||||    
T  55523733 gcagaatt 55523726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 144 - 214
Target Start/End: Original strand, 36174579 - 36174649
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgag 214  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||| || || ||||  ||||||||    
T  36174579 cgcatgttaacatgcgtagtggcattttggatttttactttgggaatgagtgaaaccatttgagtaatgag 36174649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 148 - 221
Target Start/End: Complemental strand, 28796694 - 28796621
Alignment:
Q  148 tgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||  | || |||||||||||||||||||| |||||||||||| | ||| ||||||||||| ||||    
T  28796694 tgttaacatgcacatggacattttggacatttactttgagaatgagcgatattgtttgggtaatgagcagaatt 28796621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 36501865 - 36501937
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagca 216  Q
    ||||||| ||||||||||||||||||| |  ||||||||||||||||||||||  | || | |||||||||||    
T  36501865 cgcatgtcaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatctgggtaatgagca 36501937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 53265870 - 53265818
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcga 196  Q
    |||||||||||||||||||| ||||||||||  |||||||| |||||||||||    
T  53265870 cgcatgttaacatgcgtaggagcattttggaattttactttaggaatgagcga 53265818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 44 - 94
Target Start/End: Original strand, 12572699 - 12572749
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagc 94  Q
    |||||||||||||| ||||||||||||||||| ||||||| |||| |||||    
T  12572699 ttgaaaatgatgcatgatgaggttctgcctgggctaataatagcatgtagc 12572749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 51718260 - 51718202
Alignment:
Q  136 tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    ||||||||| ||||||||  || ||||||||||||| ||| ||||||||||||||||||    
T  51718260 tcacgctacacatgttaagttgtgtaggggcattttcgacttttactttgggaatgagc 51718202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 27992188 - 27992143
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    |||||||||| ||||||||||| || ||||||||||||||||||||    
T  27992188 gttaacatgcttaggggcatttcggtcatttactttgggaatgagc 27992143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 149 - 194
Target Start/End: Complemental strand, 38677012 - 38676967
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    |||||||||||||| || |||||||||||||| |||||||||||||    
T  38677012 gttaacatgcgtagaggtattttggacatttattttgggaatgagc 38676967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 115 - 215
Target Start/End: Complemental strand, 40923484 - 40923383
Alignment:
Q  115 cttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatga 213  Q
    ||||||||||| |||  |||| |||| ||||||| |||||||| ||||||||||||||  || |||||||||| ||||| ||||| | ||  ||||||||    
T  40923484 cttataactagtgcatgttaactcactctacgcaagttaacatacgtaggggcattttttacttttactttggaaatgaacgatattgttagggtaatga 40923385  T
Q  214 gc 215  Q
    ||    
T  40923384 gc 40923383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 148 - 221
Target Start/End: Original strand, 55527917 - 55527990
Alignment:
Q  148 tgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||||||||| || ||||| |||||| |||||||||  | |||||  ||||||||| ||||    
T  55527917 tgttaacatgcgtaggggcatttcggtcatttgctttggaaatgagcgaatccatttaaataatgagcagaatt 55527990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 165 - 221
Target Start/End: Complemental strand, 12572485 - 12572429
Alignment:
Q  165 gcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||||||||||||||||| ||||| ||| | |||| |||| ||||    
T  12572485 gcattttggacatttactttgggaatgagcaatactgtttggctaataagcagaatt 12572429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 204
Target Start/End: Complemental strand, 23283292 - 23283232
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactattt 204  Q
    ||||||||||| ||| ||||||||||| || |||||||||||| ||| ||||| |||||||    
T  23283292 cgcatgttaacttgcataggggcatttcggtcatttactttggaaataagcgaaactattt 23283232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 145 - 200
Target Start/End: Complemental strand, 33161707 - 33161652
Alignment:
Q  145 gcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatact 200  Q
    ||||||||||||  | ||||| |||||||| ||||||||||||||||| |||||||    
T  33161707 gcatgttaacatatgcaggggtattttggatatttactttgggaatgaacgatact 33161652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 55312286 - 55312225
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagt 105  Q
    |||||||| || || |||||||||||| || | ||||||||||||||||| |||||| ||||    
T  55312286 ttgaaaataatacatgatgaggttctgtctcggctaataacagcacgtagtgtgactcaagt 55312225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 196
Target Start/End: Original strand, 12586798 - 12586849
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcga 196  Q
    ||||||||||||||||||||| ||||| || |||||| ||||| |||||||||    
T  12586798 cgcatgttaacatgcgtagggacatttcggtcattta-tttggaaatgagcga 12586849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 136 - 192
Target Start/End: Original strand, 38677654 - 38677710
Alignment:
Q  136 tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatga 192  Q
    |||||||||| | ||||||||||| ||||  |||||| | |||||||||||||||||    
T  38677654 tcacgctacgtaagttaacatgcgcagggatattttgaatatttactttgggaatga 38677710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 40312794 - 40312866
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagca 216  Q
    ||||||||||||| |||| | | ||||| ||| |||||||||| ||||||||| |  |||| |||||||||||    
T  40312794 cgcatgttaacatacgtaagagtattttagacttttactttggaaatgagcgaaatcatttgggtaatgagca 40312866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 40322870 - 40322942
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagca 216  Q
    ||||||||||||| |||| | | ||||| ||| |||||||||| ||||||||| |  |||| |||||||||||    
T  40322870 cgcatgttaacatacgtaagagtattttagacttttactttggaaatgagcgaaatcatttgggtaatgagca 40322942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 98; Significance: 2e-48; HSPs: 19)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 44 - 192
Target Start/End: Complemental strand, 22492625 - 22492476
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgct 142  Q
    |||||||||||||  |||||||||||| |||| |||||||||||||||| ||||||||||||| | |||||||||||||||||||||||||| |||||||    
T  22492625 ttgaaaatgatgcttgatgaggttctgtctgggctaataacagcacgtaacgtgacttaagttgcgttcctcttataactagcgcaacttaagtcacgct 22492526  T
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatga 192  Q
    || |||||||| ||||| |||||||||||| |||||||||||||||||||    
T  22492525 acacatgttaatatgcgcaggggcattttgaacatttactttgggaatga 22492476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 44 - 222
Target Start/End: Original strand, 12969163 - 12969341
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgct 142  Q
    |||||||||| |||  |||||| ||||||||| ||||| |||||||||||||||||||||||| | ||  |||||||||||||||||||||| |||||||    
T  12969163 ttgaaaatgaggcagaatgaggctctgcctgggctaattacagcacgtagcgtgacttaagttacgtttatcttataactagcgcaacttaagtcacgct 12969262  T
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaattt 222  Q
    |||||||||||||||||||||||||||||| || |||||||| ||||||||||  || |||||| ||||||||| |||||    
T  12969263 acgcatgttaacatgcgtaggggcattttgaacttttacttt-ggaatgagcggaaccatttagataatgagcagaattt 12969341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 95 - 198
Target Start/End: Complemental strand, 42119285 - 42119181
Alignment:
Q  95 gtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgag 193  Q
    |||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||     
T  42119285 gtgacttaagttgcattcctcttataactagcgcaacttaagtcacgctacacatgttaacatgcgtaggggcattttggacatttactttgggattgaa 42119186  T
Q  194 cgata 198  Q
    |||||    
T  42119185 cgata 42119181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 44 - 221
Target Start/End: Original strand, 37892907 - 37893085
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgct 142  Q
    |||| ||||| |||| ||||||||||| |||| ||||| ||||||||||| |||||||||||| ||||  ||||||| ||| ||||  |||| |||||||    
T  37892907 ttgagaatgaggcacaatgaggttctgtctgggctaattacagcacgtagtgtgacttaagttacatttatcttatacctaacgcatgttaactcacgct 37893006  T
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||| | |||||||||| |||||||||||||||| |||||||||||||||||||| || |||| |||||| |||| ||||    
T  37893007 acgtaagttaacatgcataggggcattttggacttttactttgggaatgagcgaaaccatttgggtaattagcagaatt 37893085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 11573763 - 11573634
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||||||| | |||  |||||||||||| ||  |||| |||||||||||| |||||||| |||||||||||||| ||| |||||||||||||||    
T  11573763 gcgtgacttaagttacgttctccttataactagcacatgttaactcacgctacgcaagttaacatacgtaggggcatttttgacttttactttgggaatg 11573664  T
Q  192 agcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||| | ||| ||||||||||| ||||    
T  11573663 agcgatattgtttgggtaatgagcagaatt 11573634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 22496076 - 22496153
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||||| ||||||||| |||||||||||||  ||||||||||||||||||||||||||||| ||||    
T  22496076 cgcatgttaacatgcgtaagggcattttagacatttactttgaaaatgagcgatactatttaggtaatgagcataatt 22496153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 144 - 216
Target Start/End: Complemental strand, 11713036 - 11712964
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagca 216  Q
    ||||||||||||| |||||||||||||||||| |||||||||||||||||||| || || |||||||||||||    
T  11713036 cgcatgttaacatacgtaggggcattttggacttttactttgggaatgagcgaaaccatctaggtaatgagca 11712964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 123 - 194
Target Start/End: Complemental strand, 18387341 - 18387269
Alignment:
Q  123 tagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    ||||||||||||| |||||||||||||||||||||||||| ||||||||| || |||||||||||||||||||    
T  18387341 tagcgcaacttaagtcacgctacgcatgttaacatgcgtaagggcatttttgatatttactttgggaatgagc 18387269  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 8273324 - 8273246
Alignment:
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||||||||||||||| || ||||||||||||||||||||||  | |||| ||||||||||| ||||    
T  8273324 acgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagcagaatt 8273246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 93 - 198
Target Start/End: Complemental strand, 30760284 - 30760178
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||||||| | |||||| ||||||||||||||||||| | ||||||| ||| |||||||||| |||| |||||| |||||||||||| | ||||    
T  30760284 gcgtgacttaagttgcgttcctcatataactagcgcaacttaagttacgctacacatattaacatgcgcagggacattttagacatttactttagaaatg 30760185  T
Q  192 agcgata 198  Q
    || ||||    
T  30760184 agtgata 30760178  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 44 - 105
Target Start/End: Complemental strand, 42119374 - 42119313
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagt 105  Q
    |||||||||||||| ||||||||||||||||| ||||||||| |||||||||||||||||||    
T  42119374 ttgaaaatgatgcatgatgaggttctgcctgggctaataacaacacgtagcgtgacttaagt 42119313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 18394970 - 18395047
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||  || ||||||||||||| ||||||||||||||||||||| | ||| ||||||||||| ||||    
T  18394970 cgcatgttaacatgcacagaggcattttggacaattactttgggaatgagcgatattgtttgggtaatgagcagaatt 18395047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 12967349 - 12967271
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggac-atttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||||||||| |||||||||  ||||||||| |||||||||  || |||||||||||||||| ||||    
T  12967349 cgcatgttaacatgcgtaggggtattttggactttttactttgagaatgagcggaaccatttaggtaatgagcagaatt 12967271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 119 - 200
Target Start/End: Complemental strand, 24928762 - 24928680
Alignment:
Q  119 taactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatact 200  Q
    |||||||||||  |||| |||||||||||| |||||||||  |||| ||||||| ||| |||||||||||||||||| |||||    
T  24928762 taactagcgcatgttaactcacgctacgcaagttaacatgtttaggagcattttcgacttttactttgggaatgagccatact 24928680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 96 - 195
Target Start/End: Complemental strand, 939686 - 939586
Alignment:
Q  96 tgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    ||||||||||  | || |||||| ||||||||||  |||| ||||||||| || |||||  ||| | |||||||||||||||||||| ||||||||||||    
T  939686 tgacttaagtcacgtttctcttacaactagcgcatgttaactcacgctacacaagttaagttgcattggggcattttggacatttacattgggaatgagc 939587  T
Q  195 g 195  Q
    |    
T  939586 g 939586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 2154339 - 2154263
Alignment:
Q  145 gcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||  ||||||||| |||||||  | |||||||||||||||||||||| | ||| ||||||||||| ||||    
T  2154339 gcatgttaagttgcgtagggacattttgatcttttactttgggaatgagcgatattgtttgggtaatgagcagaatt 2154263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 119 - 221
Target Start/End: Complemental strand, 25678376 - 25678273
Alignment:
Q  119 taactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaa 217  Q
    |||||||||||  |||| ||| |||||||| |||||||||  |||| ||||||| ||| |||||||||  ||||||||||||| ||| | |||||||||     
T  25678376 taactagcgcatgttaactcatgctacgcaagttaacatgtttaggagcatttttgacttttactttgaaaatgagcgatactgtttggataatgagcag 25678277  T
Q  218 aatt 221  Q
    ||||    
T  25678276 aatt 25678273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 150 - 195
Target Start/End: Original strand, 8277394 - 8277439
Alignment:
Q  150 ttaacatgcgtaggggcattttggacatttactttgggaatgagcg 195  Q
    ||||| |||||| |||||||| || |||||||||||||||||||||    
T  8277394 ttaacttgcgtaagggcatttcggtcatttactttgggaatgagcg 8277439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 77 - 105
Target Start/End: Complemental strand, 18387374 - 18387346
Alignment:
Q  77 ctaataacagcacgtagcgtgacttaagt 105  Q
    |||||||||||||||||||||||||||||    
T  18387374 ctaataacagcacgtagcgtgacttaagt 18387346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 97; Significance: 9e-48; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 44 - 215
Target Start/End: Original strand, 33800397 - 33800569
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgct 142  Q
    ||||||||||||||  |||||||| || |||  |||||||||||||||||| ||||||||||| | |||||||||||||||| ||||||||| |||||||    
T  33800397 ttgaaaatgatgcagaatgaggttatgtctgacctaataacagcacgtagcatgacttaagttgcgttcctcttataactagtgcaacttaagtcacgct 33800496  T
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagc 215  Q
    ||||||||||||||||| | ||||||||| |||||||||||| ||||||||||||||| ||||  ||||||||    
T  33800497 acgcatgttaacatgcgcaagggcattttagacatttactttaggaatgagcgatactgtttaaataatgagc 33800569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 33220786 - 33220864
Alignment:
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||||||||||||||||| || ||||||||||||||||| || || |||| ||||||||||| ||||    
T  33220786 acgcatgttaacatgcgtaggggcattttgaacttttactttgggaatgagtgaaaccatttgggtaatgagcagaatt 33220864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 93 - 221
Target Start/End: Complemental strand, 34276322 - 34276193
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||||||| | | |  |||||||||||||||  |||| |||||||||||| |||||||||| ||||||||||||  || |||||||||| |||     
T  34276322 gcgtgacttaagttacgtcctccttataactagcgcatgttaactcacgctacgcaagttaacatgcataggggcattttttacttttactttggaaata 34276223  T
Q  192 agcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||| | ||| ||||||||||| ||||    
T  34276222 agcgatattgtttgggtaatgagcagaatt 34276193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 87 - 198
Target Start/End: Original strand, 28707087 - 28707197
Alignment:
Q  87 cacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttg 185  Q
    ||||| |||||||||||||| | |||||||||||||||||||||||||| ||| |||| ||||||||| ||  | |||||||||||||| |||||||||     
T  28707087 cacgttgcgtgacttaagttgcgttcctcttataactagcgcaacttaagtcatgctatgcatgttaatatttgcaggggcattttgga-atttacttt- 28707184  T
Q  186 ggaatgagcgata 198  Q
     ||||||||||||    
T  28707185 agaatgagcgata 28707197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 123 - 221
Target Start/End: Original strand, 43640951 - 43641050
Alignment:
Q  123 tagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||| ||||||||| || ||||||||||||||||||| ||||  |||||||||||| ||||||| | || |||| ||||||||||| ||||    
T  43640951 tagcgcaacttaagtcacgctacacaagttaacatgcgtaggggcaatttgatcatttactttggaaatgagccaaaccatttgggtaatgagcagaatt 43641050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 5967237 - 5967314
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||||||  | |||| ||||||||||| ||||    
T  5967237 cgcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggtaatgagcagaatt 5967314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 115 - 221
Target Start/End: Original strand, 23558953 - 23559060
Alignment:
Q  115 cttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatga 213  Q
    ||||||||||| |||  |||| |||||||||| | ||||||||||||||||||||||||||| ||||| |||| ||||||||  || |||| | ||||||    
T  23558953 cttataactagggcatgttaactcacgctacgtaagttaacatgcgtaggggcattttggacttttaccttggcaatgagcggaaccatttggataatga 23559052  T
Q  214 gcaaaatt 221  Q
    ||| ||||    
T  23559053 gcagaatt 23559060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 28707006 - 28707067
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagt 105  Q
    ||||||||||||||  |||||||||||||||   ||||||||||||||||||||||||||||    
T  28707006 ttgaaaatgatgcataatgaggttctgcctgagttaataacagcacgtagcgtgacttaagt 28707067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 34279560 - 34279638
Alignment:
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||| |||||||||||| |  |||||||||| |||||||||||  | ||||| |||||||||| ||||    
T  34279560 acgcatgttaacatgtgtaggggcatttcgatcatttactttaggaatgagcgaatccatttaagtaatgagcagaatt 34279638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 136 - 195
Target Start/End: Complemental strand, 9384702 - 9384643
Alignment:
Q  136 tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcg 195  Q
    ||||||||||||||||||  ||||||||| ||||||||||||||| ||||  ||||||||    
T  9384702 tcacgctacgcatgttaagttgcgtagggacattttggacatttattttgaaaatgagcg 9384643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 4640795 - 4640872
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||  || ||||||||||||| | | |||||||||| ||||||||||||  ||| ||||||||||| ||||    
T  4640795 cgcatgttaagttgtgtaggggcattttagtcttttactttggaaatgagcgatacagtttgggtaatgagcagaatt 4640872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 163 - 221
Target Start/End: Complemental strand, 28703940 - 28703882
Alignment:
Q  163 gggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||||| |||   ||||||||||| ||||| ||||||||||| ||||    
T  28703940 gggcattttggacatttatttttaaaatgagcgatattatttgggtaatgagcagaatt 28703882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 177 - 221
Target Start/End: Complemental strand, 9418632 - 9418588
Alignment:
Q  177 tttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||||||| || |||| ||||||||||| ||||    
T  9418632 tttactttgggaatgagcgaaaccatttgggtaatgagcagaatt 9418588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 3e-29; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 44 - 216
Target Start/End: Original strand, 26604072 - 26604245
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgct 142  Q
    |||||||||| |||  | |||||| || |||| ||||| |||||||||||||||||||||||| | || ||| |||||||||||||  |||| |||||||    
T  26604072 ttgaaaatgaggcagaacgaggttatgtctgggctaattacagcacgtagcgtgacttaagttacgtttctcgtataactagcgcatgttaactcacgct 26604171  T
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagca 216  Q
    ||| | |||||||||||||||||||||||  || ||||||||| |||||||||  || ||||  ||||||||||    
T  26604172 acgtaagttaacatgcgtaggggcattttaaacttttactttgagaatgagcggaaccatttgagtaatgagca 26604245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 93 - 221
Target Start/End: Original strand, 20379616 - 20379745
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    ||||||||||| || | || ||||||||||||| ||||||||| |||||||| |||| ||||  |||||||||||||||||||| |||||||||||||||    
T  20379616 gcgtgacttaacttacgtttctcttataactagtgcaacttaagtcacgctatgcatattaagttgcgtaggggcattttggacttttactttgggaatg 20379715  T
Q  192 agcgatactatttaggtaatgagcaaaatt 221  Q
    ||||  || |||||| ||||||||| ||||    
T  20379716 agcggaaccatttagataatgagcataatt 20379745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 44 - 195
Target Start/End: Complemental strand, 30359883 - 30359730
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagttccattcctcttataactagcgcaacttaa--tcacgc 141  Q
    |||||||||| |||  |||||||||||| ||  ||||| |||||| ||||||||||||||||| | || |||||||||||||||||  ||||   |||||    
T  30359883 ttgaaaatgaggcagaatgaggttctgcttgagctaattacagcatgtagcgtgacttaagttacgtttctcttataactagcgcatgttaaacccacgc 30359784  T
Q  142 tacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcg 195  Q
    |||| | ||||||| || ||||| | |||||||| |||||||||||||||||||    
T  30359783 tacgtaagttaacaagcatagggacgttttggacttttactttgggaatgagcg 30359730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 93 - 214
Target Start/End: Original strand, 38791996 - 38792118
Alignment:
Q  93 gcgtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatg 191  Q
    |||||||||||||| |||| ||||||||||||||||||||||| ||||||||||||||||| || | ||||||| ||||| ||| ||||||||| |||||    
T  38791996 gcgtgacttaagttacatttctcttataactagcgcaacttaagtcacgctacgcatgttatcaagtgtaggggtattttagacttttactttgagaatg 38792095  T
Q  192 agcgatactatttaggtaatgag 214  Q
    || || || ||||  ||||||||    
T  38792096 agtgaaaccatttgagtaatgag 38792118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 92 - 197
Target Start/End: Complemental strand, 46302297 - 46302191
Alignment:
Q  92 agcgtgacttaagttccattcctcttataactagcgcaactt-aatcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaat 190  Q
    ||||||||||||||| | |||||||||||||||||||||||| ||||||||| |||||||||||||||  | | | ||||||||||||||||||   |||    
T  46302297 agcgtgacttaagttacgttcctcttataactagcgcaacttaaatcacgctgcgcatgttaacatgcacaagagtattttggacatttacttttacaat 46302198  T
Q  191 gagcgat 197  Q
    |||||||    
T  46302197 gagcgat 46302191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 123 - 221
Target Start/End: Complemental strand, 31823689 - 31823590
Alignment:
Q  123 tagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||| | |||| ||||||||||||||| | |||||||||||||| ||||| ||||||||||||||||| | ||| ||||||||||| ||||    
T  31823689 tagcgcaacttaagttacgcaacgcatgttaacatgtgcaggggcattttggatatttattttgggaatgagcgatattgtttgggtaatgagcagaatt 31823590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 123 - 192
Target Start/End: Original strand, 48221676 - 48221746
Alignment:
Q  123 tagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatga 192  Q
    ||||||||||||| ||||||||| ||||||| |||||||||||| ||||||||||||||||||||||||||    
T  48221676 tagcgcaacttaagtcacgctacacatgttagcatgcgtaggggtattttggacatttactttgggaatga 48221746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 1537246 - 1537323
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||| |||||||||||| |||||||||||| |||||| ||||||| ||| ||||||||||| ||||    
T  1537246 cgcatgttaacatgcgcaggggcattttgaacatttactttgagaatgaacgatactgtttgggtaatgagcagaatt 1537323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 117 - 221
Target Start/End: Original strand, 44552674 - 44552779
Alignment:
Q  117 tataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagc 215  Q
    |||||||||||||  |||| ||||| |||||| ||||||||||||||| ||||||| ||| ||||||||| |||||||||||| | ||| ||||||||||    
T  44552674 tataactagcgcatgttaactcacgttacgcaagttaacatgcgtaggagcattttcgacttttactttgagaatgagcgatattgtttgggtaatgagc 44552773  T
Q  216 aaaatt 221  Q
    | ||||    
T  44552774 agaatt 44552779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 216
Target Start/End: Original strand, 5172 - 5244
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagca 216  Q
    ||||||||||||||||||||||||||| || ||||||||||||||||||||||  | |||| |||||||||||    
T  5172 cgcatgttaacatgcgtaggggcatttcggtcatttactttgggaatgagcgaatccatttgggtaatgagca 5244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 19365395 - 19365472
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||| ||||||||||| |||| || |||||  |||||||||||||||  | |||||||||||||||| ||||    
T  19365395 cgcatgttaaaatgcgtaggggtatttcggtcattttatttgggaatgagcgaatccatttaggtaatgagcagaatt 19365472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 38790962 - 38790885
Alignment:
Q  145 gcatgttaacatgcgtaggggcattttggacatttactttgg-gaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||||||| ||||||||| ||||||||||  ||||||||| || |||| | ||||||||| ||||    
T  38790962 gcatgttaacatgcgtaggggtattttggacttttactttggaaaatgagcgaaaccatttggataatgagcagaatt 38790885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 26502431 - 26502508
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||| | ||| ||||| ||||||||||| ||||||||| |||||||||| || |||||| ||| ||||| ||||    
T  26502431 cgcatgttgaaatgtgtaggcgcattttggacttttactttgagaatgagcgaaaccatttagataaggagcataatt 26502508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 26590283 - 26590206
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||| | ||| ||||| ||||||||||| ||||||||| |||||||||| || |||||| ||| ||||| ||||    
T  26590283 cgcatgttgaaatgtgtaggcgcattttggacttttactttgagaatgagcgaaaccatttagataaggagcataatt 26590206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 196
Target Start/End: Complemental strand, 38386252 - 38386200
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcga 196  Q
    |||||||||||||||||||||||||||    |||||||||||| |||||||||    
T  38386252 cgcatgttaacatgcgtaggggcatttcaatcatttactttggaaatgagcga 38386200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 136 - 194
Target Start/End: Complemental strand, 26009455 - 26009397
Alignment:
Q  136 tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    ||||||||||   |||||||||||||||   ||||||| ||||||||||||||||||||    
T  26009455 tcacgctacgtgagttaacatgcgtaggaatattttggtcatttactttgggaatgagc 26009397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 167 - 221
Target Start/End: Complemental strand, 42548216 - 42548162
Alignment:
Q  167 attttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||| |||||||||||||||||| | || |||| ||||||||||| ||||    
T  42548216 attttggacttttactttgggaatgagcaaaacgatttgggtaatgagcagaatt 42548162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 60 - 105
Target Start/End: Complemental strand, 2355634 - 2355590
Alignment:
Q  60 atgaggttctgcctggactaataacagcacgtagcgtgacttaagt 105  Q
    |||||||||||||||| |||| | ||||||||||||||||||||||    
T  2355634 atgaggttctgcctgg-ctaagagcagcacgtagcgtgacttaagt 2355590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 20379529 - 20379590
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagt 105  Q
    |||||||||| |||  |||||||||||  | | ||||| |||||||||||||||||||||||    
T  20379529 ttgaaaatgaggcagaatgaggttctgtttaggctaattacagcacgtagcgtgacttaagt 20379590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 161 - 194
Target Start/End: Complemental strand, 25428792 - 25428759
Alignment:
Q  161 aggggcattttggacatttactttgggaatgagc 194  Q
    |||||||||||||| |||||||||||||||||||    
T  25428792 aggggcattttggatatttactttgggaatgagc 25428759  T

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Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Complemental strand, 40917758 - 40917721
Alignment:
Q  184 tgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  40917758 tgggaatgagcgatactatttgggtaatgagcagaatt 40917721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: scaffold0041
Description:

Target: scaffold0041; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 24315 - 24442
Alignment:
Q  95 gtgacttaagttccattcctcttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgag 193  Q
    |||||||||||| | |||  || ||||||||||||  |||| |||||||||||| |||||||||||||||||||||||  || |||||||||||||||||    
T  24315 gtgacttaagttacgttctcctgataactagcgcatgttaactcacgctacgcaagttaacatgcgtaggggcattttaaacttttactttgggaatgag 24414  T
Q  194 cgatactatttaggtaatgagcaaaatt 221  Q
    ||||||| |||  |||||||||| ||||    
T  24415 cgatactgtttgagtaatgagcagaatt 24442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0041; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 184 - 221
Target Start/End: Original strand, 55337 - 55374
Alignment:
Q  184 tgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||||||| ||||||||||| ||||    
T  55337 tgggaatgagcgatactatttgggtaatgagcagaatt 55374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 2e-24; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 136 - 221
Target Start/End: Original strand, 35060887 - 35060972
Alignment:
Q  136 tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||  |  |||| ||||||||||| ||||    
T  35060887 tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttggaaatgagcggaatcatttgggtaatgagcagaatt 35060972  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 144 - 200
Target Start/End: Complemental strand, 14830470 - 14830414
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatact 200  Q
    |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||    
T  14830470 cgcatgttaacatgtgtagggacattttggacatttactttgggaatgagcgatact 14830414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 143 - 222
Target Start/End: Original strand, 4321737 - 4321816
Alignment:
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaattt 222  Q
    |||||||||||| ||||||| |||||||||  |||||||||||  ||||||||| ||||||||||||||||||| |||||    
T  4321737 acgcatgttaacttgcgtagaggcattttgatcatttactttgaaaatgagcgaaactatttaggtaatgagcagaattt 4321816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 115 - 221
Target Start/End: Complemental strand, 17436144 - 17436037
Alignment:
Q  115 cttataactagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatga 213  Q
    |||||||||||||||  |||| | |||||||||| |||||||||||||| |||||||| ||| |||||||||||||||||||  || ||||   ||||||    
T  17436144 cttataactagcgcatgttaacttacgctacgcaagttaacatgcgtagaggcattttagacttttactttgggaatgagcggaaccatttgaataatga 17436045  T
Q  214 gcaaaatt 221  Q
    ||||||||    
T  17436044 gcaaaatt 17436037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 14153432 - 14153355
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||||||||||| ||||||| |||||||||||||||||||| | |  |||| ||||||||||| ||||    
T  14153432 cgcatgttaacatgcgtaggggtattttggtcatttactttgggaatgagcaaaatcatttgggtaatgagcagaatt 14153355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 121 - 197
Target Start/End: Original strand, 14154553 - 14154630
Alignment:
Q  121 actagcgcaacttaa-tcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgat 197  Q
    |||| |||||||||| ||||||||| |||||||||||||| |||| ||||||||||||||| ||| ||||||||||||    
T  14154553 actaacgcaacttaagtcacgctacacatgttaacatgcgcagggacattttggacatttattttaggaatgagcgat 14154630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 143 - 221
Target Start/End: Original strand, 31522534 - 31522612
Alignment:
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||| |||||| ||||||||||||||| || |||||||||||||||||||||  || |||| ||||||||||| ||||    
T  31522534 acgcaagttaacttgcgtaggggcatttcggtcatttactttgggaatgagcggaaccatttgggtaatgagcagaatt 31522612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 144 - 221
Target Start/End: Complemental strand, 32274262 - 32274185
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||||||||||||| |  ||||||||||||||||||||||  | |||| || |||||||| ||||    
T  32274262 cgcatgttaacatgcgtaggggcatttcgatcatttactttgggaatgagcgaatccatttgggcaatgagcataatt 32274185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 35060826 - 35060887
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagt 105  Q
    ||||||||||||||  |||||||||||| ||| |||||||||||| ||||||||||||||||    
T  35060826 ttgaaaatgatgcagaatgaggttctgcttgggctaataacagcatgtagcgtgacttaagt 35060887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 17436541 - 17436618
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||||||||| |||||| ||||| || ||||||||||||||| ||||||  | |||| ||||||||||| ||||    
T  17436541 cgcatgttaacatgtgtagggacatttcggtcatttactttgggaacgagcgaatccatttgggtaatgagcagaatt 17436618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 144 - 214
Target Start/End: Complemental strand, 16444347 - 16444276
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggaca-tttactttgggaatgagcgatactatttaggtaatgag 214  Q
    |||||||||||||||| |||||||||||||| | |||||||| | |||||| |||||| ||| |||||||||    
T  16444347 cgcatgttaacatgcgcaggggcattttggatattttactttagaaatgagtgatactgtttgggtaatgag 16444276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 144 - 221
Target Start/End: Original strand, 32275771 - 32275848
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||| ||| |||||||||||  | |||||||||||||||||||||  || |||| | ||||||||| ||||    
T  32275771 cgcatgttaacttgcataggggcatttcagtcatttactttgggaatgagcggaaccatttggataatgagcataatt 32275848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 144 - 192
Target Start/End: Complemental strand, 31483721 - 31483673
Alignment:
Q  144 cgcatgttaacatgcgtaggggcattttggacatttactttgggaatga 192  Q
    |||||||||||||||||||||||||||||   ||||||||| |||||||    
T  31483721 cgcatgttaacatgcgtaggggcattttgattatttactttaggaatga 31483673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 145 - 194
Target Start/End: Complemental strand, 4319161 - 4319112
Alignment:
Q  145 gcatgttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    |||||||||||||||||||||||||| |  |||||||||| | |||||||    
T  4319161 gcatgttaacatgcgtaggggcatttcgatcatttactttagtaatgagc 4319112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 149 - 194
Target Start/End: Original strand, 7203956 - 7204001
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    ||||||||||||||||| ||||||  ||||||||||||||| ||||    
T  7203956 gttaacatgcgtaggggtattttgatcatttactttgggaacgagc 7204001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 221
Target Start/End: Complemental strand, 806618 - 806546
Alignment:
Q  149 gttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    |||||||| |||||| | ||||| ||||||||||||| |||||||| | ||| ||| ||||| ||||| ||||    
T  806618 gttaacatacgtaggagtattttagacatttactttgagaatgagcaaaactgtttgggtaaagagcagaatt 806546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: scaffold1763
Description:

Target: scaffold1763; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 95 - 221
Target Start/End: Original strand, 316 - 441
Alignment:
Q  95 gtgacttaagttccattcctcttataactagcgcaacttaatcacgctacgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    |||||||||||| | || ||||||||||||| |||  |||| | | ||||| | |||||||||| || |||||||| |||  ||||||||||||||||||    
T  316 gtgacttaagttacgtttctcttataactagtgcatgttaa-ctcactacgtaagttaacatgcataagggcatttgggatttttactttgggaatgagc 414  T
Q  195 gatactatttaggtaatgagcaaaatt 221  Q
    || || |||| ||||| ||||| ||||    
T  415 gaaaccatttgggtaaagagcataatt 441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1763; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 44 - 105
Target Start/End: Original strand, 246 - 307
Alignment:
Q  44 ttgaaaatgatgcacgatgaggttctgcctggactaataacagcacgtagcgtgacttaagt 105  Q
    |||||||||| ||| ||||||||||| | ||| |||| ||||||||| ||||||||||||||    
T  246 ttgaaaatgaggcaggatgaggttcttcttgggctaagaacagcacggagcgtgacttaagt 307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1063 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: scaffold1063
Description:

Target: scaffold1063; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 143 - 221
Target Start/End: Complemental strand, 1554 - 1476
Alignment:
Q  143 acgcatgttaacatgcgtaggggcattttggacatttactttgggaatgagcgatactatttaggtaatgagcaaaatt 221  Q
    ||||||||||||||||| ||||||||||||||| ||||||||   ||||||||  || |||| ||||||||||| ||||    
T  1554 acgcatgttaacatgcgcaggggcattttggacttttactttaaaaatgagcggaaccatttgggtaatgagcagaatt 1476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0163 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0163
Description:

Target: scaffold0163; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 155 - 194
Target Start/End: Complemental strand, 35843 - 35804
Alignment:
Q  155 atgcgtaggggcattttggacatttactttgggaatgagc 194  Q
    ||||||||||||||||||||||||||||||| ||||||||    
T  35843 atgcgtaggggcattttggacatttactttgagaatgagc 35804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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