View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_high_21 (Length: 250)
Name: NF8050_high_21
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_high_21 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 42 - 250
Target Start/End: Original strand, 35132747 - 35132955
Alignment:
| Q |
42 |
catacatcttgttttagcagcaataaaaaagacccaaaaacaaagatgaatgaaaatgcaggaagagtacaatgaaactaacagagggatgattgaagaa |
141 |
Q |
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| T |
35132747 |
catacatcttgttttagcagcagtaaaaaagacccaaaaacaaagatgaatgaaaatgcaggaacagtacaatgaaactaacagagggatgattgaagaa |
35132846 |
T |
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| Q |
142 |
agcacaaggacttacagtaagaatatttggatgacgcaacctcagaagcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttca |
241 |
Q |
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| T |
35132847 |
agcacaaggacttacagtaagaatatttggatgacgcaacctcagaagcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttca |
35132946 |
T |
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| Q |
242 |
tcttcttca |
250 |
Q |
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| T |
35132947 |
tcttcttca |
35132955 |
T |
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 188 - 249
Target Start/End: Original strand, 43933314 - 43933375
Alignment:
| Q |
188 |
agcaaagcaacttcagaagtaaattgcttctcaagaaaagaagccaaatcttcatcttcttc |
249 |
Q |
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| T |
43933314 |
agcaaagcaacctcagaagtaaagtgtttctcaagcaaagcagccaattcctcatcctcttc |
43933375 |
T |
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