View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_high_22 (Length: 247)
Name: NF8050_high_22
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_high_22 |
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Alignment Details
Target: chr3 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 230
Target Start/End: Original strand, 52376705 - 52376934
Alignment:
| Q |
1 |
gcatttgttggtgcttgttgtggtgatttattggatgaaccatctgttgttggtgtcggtgctcctccttctggtgtgtctgcaggcaaatcttctgcag |
100 |
Q |
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| T |
52376705 |
gcatttgttggtgcttgttgtggtgatttattggatgaaccatctgctgttggtgtcggtgctcctccttctggtgtgtctgcaggcaaatcttctgcag |
52376804 |
T |
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| Q |
101 |
caccaattggtgaatctgctggttttggaggtgaagttcctgtgccattgcttgtagcactgtttgtaacaaatagttggttagtgtaaaaatgaaggta |
200 |
Q |
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||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
52376805 |
caccaattggtgaatctgctgattttggaggtgaacttcctgtgccattgcttgtagcactgtttgtaacaaatagttggttagtgtaaaaattaaggta |
52376904 |
T |
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| Q |
201 |
tgaaaatcttgttttgttgcacatttcttc |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
52376905 |
tgaaaatcttgttttgttgcacatttcttc |
52376934 |
T |
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