View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_high_28 (Length: 211)
Name: NF8050_high_28
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_high_28 |
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Alignment Details
Target: chr2 (Bit Score: 162; Significance: 1e-86; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 15 - 193
Target Start/End: Original strand, 3915254 - 3915436
Alignment:
| Q |
15 |
aatatttcaagtagttatcttacttgcaagtgtctacatctgcatgtgttttaca----attcctaaaaatgttgtcgttttatgtattgagtttctaaa |
110 |
Q |
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| T |
3915254 |
aatatttcaagtagttatcttacttgcaagtgtctacatctgcatgtgttttacatacaattcctaaaaatgttgtcgttttatgtattgagttcctaaa |
3915353 |
T |
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| Q |
111 |
ctggaacgtgcttctaaagaaatgataggaacttcatccacaagaaacaggctaccagttaaacctgcatctggagatacaac |
193 |
Q |
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| T |
3915354 |
ctggaacgtgcttctaaagaaatgataggaacttcatccacaagaaacaggctaccagttaaacctgcatctggagatacaac |
3915436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Complemental strand, 31683893 - 31683840
Alignment:
| Q |
29 |
ttatcttacttgcaagtgtctacatctgcatgtgttttacaattcctaaaaatg |
82 |
Q |
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| T |
31683893 |
ttatcttacttgcaagtgtccacatctgcttatgtttcacaattcctaaaaatg |
31683840 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 31894539 - 31894592
Alignment:
| Q |
29 |
ttatcttacttgcaagtgtctacatctgcatgtgttttacaattcctaaaaatg |
82 |
Q |
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| T |
31894539 |
ttatcttacttgcaagtgtccacatctgcttatgtttcacaattcctaaaaatg |
31894592 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 31899123 - 31899176
Alignment:
| Q |
29 |
ttatcttacttgcaagtgtctacatctgcatgtgttttacaattcctaaaaatg |
82 |
Q |
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| T |
31899123 |
ttatcttacttgcaagtgtccacatctgcttatgtttcacaattcctaaaaatg |
31899176 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 31914832 - 31914885
Alignment:
| Q |
29 |
ttatcttacttgcaagtgtctacatctgcatgtgttttacaattcctaaaaatg |
82 |
Q |
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| T |
31914832 |
ttatcttacttgcaagtgtccacatctgcttatgtttcacaattcctaaaaatg |
31914885 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 29 - 82
Target Start/End: Original strand, 31948480 - 31948533
Alignment:
| Q |
29 |
ttatcttacttgcaagtgtctacatctgcatgtgttttacaattcctaaaaatg |
82 |
Q |
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| T |
31948480 |
ttatcttacttgcaagtgtccacatctgcttatgtttcacaattcctaaaaatg |
31948533 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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