View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8050_high_4 (Length: 444)

Name: NF8050_high_4
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8050_high_4
NF8050_high_4
[»] chr6 (20 HSPs)
chr6 (22-422)||(1803809-1804206)
chr6 (197-268)||(6435148-6435219)
chr6 (201-268)||(12441643-12441710)
chr6 (199-269)||(17417121-17417192)
chr6 (222-268)||(24038318-24038364)
chr6 (197-262)||(2881445-2881510)
chr6 (197-262)||(3339393-3339458)
chr6 (197-262)||(3660247-3660312)
chr6 (197-262)||(27334976-27335041)
chr6 (197-262)||(27395716-27395781)
chr6 (197-269)||(11017494-11017566)
chr6 (197-272)||(2056895-2056970)
chr6 (197-262)||(2862184-2862249)
chr6 (209-262)||(15328613-15328666)
chr6 (209-262)||(15364783-15364836)
chr6 (199-271)||(21210370-21210442)
chr6 (197-269)||(33491850-33491922)
chr6 (197-262)||(237292-237357)
chr6 (209-262)||(25924758-25924811)
chr6 (197-262)||(29376610-29376675)
[»] chr7 (28 HSPs)
chr7 (199-272)||(8742497-8742570)
chr7 (197-271)||(37385118-37385192)
chr7 (199-268)||(1838347-1838416)
chr7 (197-268)||(25614709-25614780)
chr7 (197-269)||(10014842-10014914)
chr7 (197-269)||(42476455-42476527)
chr7 (199-264)||(42942271-42942336)
chr7 (197-268)||(42431835-42431906)
chr7 (197-262)||(26041422-26041487)
chr7 (197-262)||(30864311-30864376)
chr7 (197-262)||(33050295-33050360)
chr7 (200-272)||(43255451-43255523)
chr7 (197-262)||(27164731-27164796)
chr7 (197-262)||(44511251-44511316)
chr7 (200-272)||(38978607-38978678)
chr7 (198-262)||(47530185-47530249)
chr7 (197-271)||(37149360-37149434)
chr7 (197-262)||(41227187-41227252)
chr7 (197-262)||(48057391-48057456)
chr7 (235-271)||(48558913-48558949)
chr7 (211-262)||(116757-116808)
chr7 (199-270)||(8326239-8326310)
chr7 (197-267)||(32315938-32316008)
chr7 (212-262)||(35004137-35004187)
chr7 (197-262)||(2346953-2347018)
chr7 (209-262)||(29609771-29609824)
chr7 (197-234)||(38990213-38990250)
chr7 (197-262)||(39369414-39369479)
[»] chr8 (37 HSPs)
chr8 (102-272)||(28623007-28623178)
chr8 (197-270)||(2597046-2597119)
chr8 (197-266)||(37562031-37562100)
chr8 (200-269)||(37343492-37343561)
chr8 (197-264)||(30129521-30129588)
chr8 (197-270)||(36497773-36497846)
chr8 (197-269)||(11139008-11139080)
chr8 (197-268)||(5925167-5925238)
chr8 (197-262)||(30927825-30927890)
chr8 (197-268)||(5924922-5924993)
chr8 (197-268)||(36064142-36064213)
chr8 (197-264)||(34765742-34765809)
chr8 (197-272)||(41273627-41273702)
chr8 (209-271)||(11089701-11089763)
chr8 (200-262)||(36593680-36593742)
chr8 (197-269)||(7129645-7129716)
chr8 (199-262)||(20284821-20284884)
chr8 (199-262)||(21071450-21071513)
chr8 (209-272)||(43587765-43587828)
chr8 (200-262)||(19723100-19723162)
chr8 (197-262)||(41293616-41293680)
chr8 (209-262)||(43602317-43602370)
chr8 (199-259)||(6656236-6656296)
chr8 (199-259)||(6736638-6736698)
chr8 (197-269)||(10344440-10344512)
chr8 (197-272)||(1065529-1065604)
chr8 (197-260)||(6825173-6825236)
chr8 (197-272)||(13565402-13565477)
chr8 (212-267)||(41519986-41520041)
chr8 (199-272)||(6745926-6746000)
chr8 (197-262)||(33817269-33817334)
chr8 (209-262)||(34972189-34972242)
chr8 (197-262)||(35595322-35595387)
chr8 (197-262)||(37568506-37568571)
chr8 (209-262)||(38504294-38504347)
chr8 (102-142)||(14029270-14029310)
chr8 (102-142)||(42659441-42659481)
[»] chr3 (42 HSPs)
chr3 (197-268)||(54233389-54233460)
chr3 (197-269)||(23906874-23906946)
chr3 (197-272)||(51717553-51717628)
chr3 (200-268)||(53932279-53932347)
chr3 (200-268)||(1208060-1208128)
chr3 (197-271)||(43441782-43441856)
chr3 (199-268)||(12044642-12044711)
chr3 (197-273)||(11327220-11327296)
chr3 (197-262)||(13159773-13159838)
chr3 (197-262)||(36819068-36819133)
chr3 (200-272)||(50279971-50280043)
chr3 (197-260)||(2009766-2009828)
chr3 (197-260)||(35756092-35756155)
chr3 (197-268)||(50652500-50652571)
chr3 (199-262)||(53102796-53102859)
chr3 (197-271)||(34021348-34021422)
chr3 (213-270)||(27937092-27937149)
chr3 (197-262)||(32931812-32931877)
chr3 (209-262)||(41877812-41877865)
chr3 (213-270)||(46626691-46626748)
chr3 (197-262)||(52453986-52454051)
chr3 (199-267)||(41348882-41348950)
chr3 (197-260)||(30400052-30400115)
chr3 (197-272)||(50879707-50879782)
chr3 (209-267)||(47056414-47056472)
chr3 (199-272)||(35074039-35074112)
chr3 (235-268)||(40419545-40419578)
chr3 (209-262)||(40478181-40478234)
chr3 (197-262)||(44855363-44855428)
chr3 (214-262)||(14992204-14992252)
chr3 (197-269)||(31206754-31206826)
chr3 (200-262)||(3957912-3957974)
chr3 (197-275)||(28263657-28263735)
chr3 (209-271)||(45295624-45295686)
chr3 (201-262)||(8254143-8254204)
chr3 (197-262)||(20714355-20714420)
chr3 (197-262)||(30633708-30633773)
chr3 (197-262)||(43900884-43900949)
chr3 (197-262)||(46344526-46344591)
chr3 (230-270)||(28884613-28884653)
chr3 (197-269)||(47683902-47683974)
chr3 (312-356)||(53221956-53222000)
[»] chr5 (34 HSPs)
chr5 (197-271)||(17489460-17489534)
chr5 (197-271)||(8959272-8959346)
chr5 (102-270)||(39788606-39788773)
chr5 (211-269)||(372607-372665)
chr5 (197-269)||(4292895-4292967)
chr5 (209-271)||(8726271-8726333)
chr5 (197-275)||(12512905-12512983)
chr5 (197-262)||(3263402-3263467)
chr5 (197-262)||(15622156-15622221)
chr5 (197-262)||(33823588-33823653)
chr5 (199-272)||(41984165-41984238)
chr5 (199-271)||(36548265-36548337)
chr5 (200-271)||(3154528-3154599)
chr5 (197-272)||(30574261-30574336)
chr5 (209-262)||(7077233-7077286)
chr5 (197-258)||(12401304-12401365)
chr5 (197-273)||(9594590-9594666)
chr5 (197-271)||(11464008-11464082)
chr5 (197-262)||(9596708-9596773)
chr5 (197-270)||(14914482-14914554)
chr5 (197-262)||(22920386-22920451)
chr5 (197-240)||(28501729-28501772)
chr5 (230-268)||(14070499-14070537)
chr5 (315-356)||(689548-689589)
chr5 (201-262)||(4954582-4954643)
chr5 (197-262)||(12417738-12417803)
chr5 (197-262)||(19271971-19272036)
chr5 (197-262)||(25345450-25345515)
chr5 (197-262)||(32634820-32634885)
chr5 (197-229)||(10522887-10522919)
chr5 (197-269)||(22203819-22203891)
chr5 (221-269)||(26685383-26685431)
chr5 (221-269)||(26955113-26955161)
chr5 (238-270)||(27005375-27005407)
[»] chr4 (40 HSPs)
chr4 (198-268)||(15638243-15638313)
chr4 (197-270)||(18568701-18568774)
chr4 (102-268)||(20056400-20056565)
chr4 (197-268)||(2193697-2193768)
chr4 (197-269)||(32901441-32901513)
chr4 (199-269)||(33483993-33484063)
chr4 (197-271)||(36728507-36728581)
chr4 (197-269)||(20632535-20632607)
chr4 (199-263)||(8681055-8681119)
chr4 (197-265)||(41495125-41495193)
chr4 (199-270)||(32079223-32079294)
chr4 (197-272)||(42177934-42178009)
chr4 (197-271)||(5208212-5208286)
chr4 (197-262)||(27001303-27001368)
chr4 (197-271)||(40629240-40629316)
chr4 (197-262)||(47106023-47106088)
chr4 (197-266)||(55642495-55642564)
chr4 (197-269)||(13182443-13182515)
chr4 (200-262)||(44368096-44368158)
chr4 (197-262)||(8026658-8026723)
chr4 (197-262)||(9032892-9032957)
chr4 (197-262)||(51377187-51377252)
chr4 (197-269)||(34259938-34260010)
chr4 (209-268)||(19720529-19720588)
chr4 (197-271)||(3223101-3223175)
chr4 (209-262)||(24019865-24019918)
chr4 (197-262)||(31221525-31221590)
chr4 (197-262)||(52669503-52669568)
chr4 (197-271)||(13267364-13267437)
chr4 (197-251)||(25936352-25936406)
chr4 (235-268)||(924962-924995)
chr4 (197-262)||(1796477-1796541)
chr4 (197-262)||(24235432-24235497)
chr4 (197-262)||(37022373-37022438)
chr4 (197-262)||(45548678-45548743)
chr4 (200-269)||(47519607-47519676)
chr4 (209-262)||(51224732-51224785)
chr4 (209-262)||(56025380-56025433)
chr4 (102-142)||(13252541-13252581)
chr4 (197-241)||(40258313-40258357)
[»] chr1 (30 HSPs)
chr1 (197-269)||(42843231-42843303)
chr1 (197-267)||(50777312-50777382)
chr1 (197-272)||(46902714-46902790)
chr1 (197-272)||(50797892-50797967)
chr1 (197-270)||(25130815-25130888)
chr1 (198-268)||(51193021-51193091)
chr1 (211-268)||(43457708-43457765)
chr1 (213-269)||(16480053-16480109)
chr1 (197-277)||(29489238-29489318)
chr1 (223-270)||(45305319-45305366)
chr1 (197-271)||(6829670-6829744)
chr1 (197-267)||(9011757-9011827)
chr1 (197-262)||(13813670-13813735)
chr1 (197-262)||(27578294-27578359)
chr1 (219-268)||(41459608-41459657)
chr1 (197-265)||(7078391-7078459)
chr1 (197-272)||(19920874-19920949)
chr1 (213-268)||(33660172-33660227)
chr1 (197-272)||(34395804-34395879)
chr1 (230-268)||(5959521-5959559)
chr1 (197-259)||(36669267-36669329)
chr1 (209-262)||(5383883-5383936)
chr1 (197-262)||(26501407-26501472)
chr1 (197-270)||(42829195-42829267)
chr1 (102-142)||(16479929-16479969)
chr1 (209-268)||(26547358-26547417)
chr1 (197-271)||(3291310-3291384)
chr1 (209-262)||(49189105-49189158)
chr1 (197-262)||(50035432-50035497)
chr1 (313-353)||(2880439-2880479)
[»] chr2 (29 HSPs)
chr2 (197-267)||(38572051-38572121)
chr2 (197-262)||(36582368-36582433)
chr2 (197-268)||(12192059-12192130)
chr2 (201-270)||(9694947-9695016)
chr2 (197-268)||(5962750-5962821)
chr2 (197-264)||(12358425-12358492)
chr2 (197-262)||(37966468-37966533)
chr2 (197-269)||(10550346-10550418)
chr2 (199-270)||(42141496-42141567)
chr2 (197-262)||(23047977-23048042)
chr2 (197-260)||(29168837-29168900)
chr2 (197-268)||(36909732-36909802)
chr2 (230-272)||(5954381-5954423)
chr2 (197-262)||(3195981-3196046)
chr2 (197-262)||(22353069-22353134)
chr2 (197-262)||(33029996-33030061)
chr2 (197-262)||(44484550-44484615)
chr2 (102-180)||(5962642-5962720)
chr2 (200-262)||(6885025-6885087)
chr2 (197-271)||(30192236-30192310)
chr2 (209-262)||(4097068-4097121)
chr2 (197-262)||(27307139-27307204)
chr2 (197-262)||(29871249-29871314)
chr2 (209-262)||(30413626-30413679)
chr2 (197-262)||(38246645-38246710)
chr2 (200-272)||(17826162-17826234)
chr2 (197-256)||(36383574-36383633)
chr2 (197-262)||(34144446-34144511)
chr2 (213-269)||(31847660-31847716)
[»] scaffold0522 (1 HSPs)
scaffold0522 (197-262)||(2398-2463)
[»] scaffold0002 (1 HSPs)
scaffold0002 (197-262)||(147150-147215)
[»] scaffold0049 (1 HSPs)
scaffold0049 (197-272)||(72055-72130)
[»] scaffold0004 (1 HSPs)
scaffold0004 (199-262)||(249036-249099)
[»] scaffold0514 (1 HSPs)
scaffold0514 (197-262)||(1390-1455)
[»] scaffold0172 (1 HSPs)
scaffold0172 (197-262)||(17087-17152)
[»] scaffold0332 (1 HSPs)
scaffold0332 (230-269)||(660-699)
[»] scaffold0121 (1 HSPs)
scaffold0121 (199-262)||(29897-29960)
[»] scaffold0576 (1 HSPs)
scaffold0576 (209-262)||(9554-9607)
[»] scaffold0193 (1 HSPs)
scaffold0193 (197-261)||(24785-24849)
[»] scaffold0003 (1 HSPs)
scaffold0003 (197-271)||(88920-88994)
[»] scaffold0618 (1 HSPs)
scaffold0618 (197-262)||(3473-3538)
[»] scaffold0085 (1 HSPs)
scaffold0085 (197-262)||(31194-31259)
[»] scaffold0019 (1 HSPs)
scaffold0019 (219-259)||(72495-72535)


Alignment Details
Target: chr6 (Bit Score: 259; Significance: 1e-144; HSPs: 20)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 22 - 422
Target Start/End: Original strand, 1803809 - 1804206
Alignment:
Q  22 atggactaaattgacctatgagaaacataattgatgactaagggtcttgttaactaagtgattaannnnnnnnnaagaagaatgatatttggataatcat 121  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         |||  |||||||||||    ||||||    
T  1803809 atggactaaattgacctatgagaaacataattgatgactaagggtcttgttaactaagtgattaattttctt--aaggggaatgatatttatgcaatcat 1803906  T
Q  122 tatgtgataattttttgacaannnnnnnnctcatactcacataagattcttattctctcactccattgnnnnnnnaccaataagaatagagaaaaacaag 221  Q
    |||||||||| ||||||||||        |||||| || ||||||||| |||||||||| ||||||||       ||||||||||| |||||||||||||    
T  1803907 tatgtgataactttttgacaactttctttctcatattcgcataagatttttattctctctctccattgtttttg-accaataagaagagagaaaaacaag 1804005  T
Q  222 gttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttttcttaactagtaacatagtaaaactaaagaaatattctcttcatgaactt 321  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  1804006 gttgtcaccaaagttgtcatcaattggatgtacaaatatcactactcttttcttaactaataacatagtaaaactaaagaaatattctcttcatgaactt 1804105  T
Q  322 aactcagttgatatacacattgtataatatatgtagggatcgaaagtttaaaactcaaatactctatttattcactttaagaggtggacttttagactat 421  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1804106 aactcagttgatatacacattgtataatatatgtaaggatcgaaagtttaaaactcaaatactctatttattcactttaagaggtggacttttagactat 1804205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 6435148 - 6435219
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  6435148 accaataagaagagagaaaaacaaggttgtcaccaaaattgtcatcaattggatgtacaaataccactactc 6435219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 201 - 268
Target Start/End: Original strand, 12441643 - 12441710
Alignment:
Q  201 ataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||| |||||||| |||||||||||||||| |||||||||||| |||||||||||||||||||||    
T  12441643 ataagaagagagaaaagcaaggttgtcaccaaagttgtcatcaattagatgtacaaatatcactactc 12441710  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 17417192 - 17417121
Alignment:
Q  199 caataagaat-agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||||| ||||||||| ||||||||||||||| |||||||||||||||| ||||||||||||| ||||    
T  17417192 caataagaatgagagaaaaataaggttgtcaccaaagttgtcatcaattggatatacaaatatcacttctct 17417121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 222 - 268
Target Start/End: Original strand, 24038318 - 24038364
Alignment:
Q  222 gttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    |||||||||||| |||||||||||| |||||||||||||||||||||    
T  24038318 gttgtcaccaaaattgtcatcaattagatgtacaaatatcactactc 24038364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 2881445 - 2881510
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||| |||||| |||||||||||| ||||||| || ||||||| |||||||||    
T  2881445 accaataagaagagagagaaacaaagttgtcaccaaagttgtcattaaatggatgtccaaatatca 2881510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 3339458 - 3339393
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| || ||||||||||||| ||||||| ||| ||||||| || |||||||||||||||||    
T  3339458 accaataaaaagagagaaaaacaagattgtcactaaagttgtcatgaaatggatgtacaaatatca 3339393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 3660312 - 3660247
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| || ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  3660312 accaataaaaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 3660247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 27334976 - 27335041
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| || ||||||||||||||||||||  ||| ||||||| || |||||||||||||||||    
T  27334976 accaataaaaagagagaaaaacaaggttgtcattaaagttgtcatgaaatggatgtacaaatatca 27335041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 27395716 - 27395781
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| || ||||||||||||||||||||  ||| ||||||| || |||||||||||||||||    
T  27395716 accaataaaaagagagaaaaacaaggttgtcattaaagttgtcatgaaatggatgtacaaatatca 27395781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 11017494 - 11017566
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||||||| ||||| ||||||||||||||| ||| |||| ||  | ||||||||||||||||||| ||||    
T  11017494 accaataagaagagagagaaacaaggttgtcactaaagttgttatggaatggatgtacaaatatcactgctct 11017566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 2056895 - 2056970
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||||||||| ||||| ||||||||||||||| ||| |||||||  | || |||||||||||||| | |||||||    
T  2056895 accaataagaagagagagaaacaaggttgtcactaaagttgtcatggaatgaatgtacaaatatcattgctctttt 2056970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 2862184 - 2862249
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||| ||||||  ||||||||||| ||||||| || ||||||| |||||||||    
T  2862184 accaataagaaaagagagaaacaaaattgtcaccaaagttgtcattaaatggatgtccaaatatca 2862249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 15328613 - 15328666
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||| ||||||| |||||||||||| ||||||| || |||||||||||||||||    
T  15328613 agaggaaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatca 15328666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 15364783 - 15364836
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||| ||||||| |||||||||||| ||||||| || |||||||||||||||||    
T  15364783 agaggaaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatca 15364836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 21210370 - 21210442
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||||||| |||||||||||||||||||| | || |||||||  | |||||||| |||||||| | ||||||    
T  21210370 caataagaagagagaaaaacaaggttgtcaactaagttgtcattcactggatgtataaatatcattgctcttt 21210442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 33491850 - 33491922
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||||||| ||||| ||| |||||||| | |||| ||||| |||| |||||||||| ||||||| |||||    
T  33491850 accaataagaagagagagaaataaggttgtaatcaaagttgtcttcaaatggatgtacatatatcaccactct 33491922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 237357 - 237292
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||||||| | |||||| ||| ||||||| || | ||||| |||||||||    
T  237357 accaataagaagagagaaaaacaaagatgtcacaaaagttgtcattaaatagatgtccaaatatca 237292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 25924811 - 25924758
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||| ||||||| |||||||||||| ||||||| || || ||||||||||||||    
T  25924811 agaggaaaacaaagttgtcaccaaagttgtcattaaatgaatgtacaaatatca 25924758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 29376675 - 29376610
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||| |||||| |||||||| |||| ||||||  || | |||||||||||||||    
T  29376675 accaataagaagagagcaaaacatggttgtcatcaaaattgtcactaaatagatgtacaaatatca 29376610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 66; Significance: 5e-29; HSPs: 28)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 199 - 272
Target Start/End: Original strand, 8742497 - 8742570
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  8742497 caataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactctttt 8742570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 37385192 - 37385118
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||||||||| |||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  37385192 accaataagaaaagagaagaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactcttt 37385118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 1838416 - 1838347
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||| ||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  1838416 caataagaagagaaaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactc 1838347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 25614780 - 25614709
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||    
T  25614780 accaataagaagagagaaaaacaaggttgtcaccaaaattgtcatcaattagatgtacaaatatcattactc 25614709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 10014914 - 10014842
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||| || ||||||||||||  ||||||||||| |||||||||||||||||||||||||||||||||||    
T  10014914 accaataaaaagagagaaaaacaaaattgtcaccaaagttgtcatcaattggatgtacaaatatcactactct 10014842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 42476527 - 42476455
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||| || ||| ||||||||||||||| ||||| ||||||||||||||||||||||||||||| |||||    
T  42476527 accaataaaaagagaaaaaaacaaggttgtcgccaaagttgtcatcaattggatgtacaaatatcaccactct 42476455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 264
Target Start/End: Complemental strand, 42942336 - 42942271
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcact 264  Q
    ||||||||||||||||||||||||||||||||||| || ||||||||| ||| || ||||||||||    
T  42942336 caataagaatagagaaaaacaaggttgtcaccaaaattatcatcaattagatatataaatatcact 42942271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 42431835 - 42431906
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | ||||||||||||||||| |||||    
T  42431835 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattactc 42431906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 26041422 - 26041487
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||||||| |||||||| ||| ||||||| || |||||||||||||||||    
T  26041422 accaataagaagagagaaaaacaaagttgtcactaaagttgtcataaaatggatgtacaaatatca 26041487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 30864376 - 30864311
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  30864376 accaataagaaaagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 30864311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 33050295 - 33050360
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||| ||||||||||||||| ||| ||||||| || |||||||||||||||||    
T  33050295 accaataagaagagagagaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatca 33050360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 43255523 - 43255451
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    |||||||| ||||||||  ||| ||||||||||| || ||||||||| ||||||||||||||| |||||||||    
T  43255523 aataagaagagagaaaagtaagattgtcaccaaaattatcatcaattagatgtacaaatatcattactctttt 43255451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 27164796 - 27164731
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||||||| |||||||| ||| |||||||  | |||||||||||||||||    
T  27164796 accaataagaagagagaaaaacaaagttgtcactaaaattgtcatggaatggatgtacaaatatca 27164731  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 44511251 - 44511316
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||  ||||||| ||| ||||||| || |||||||||||||||||    
T  44511251 accaataagaaaagagaaaaacaaaattgtcactaaagttgtcataaaatggatgtacaaatatca 44511316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 38978607 - 38978678
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    |||||||| ||||||||||||||||||||| ||| ||||||| ||  |||||||||||||||| | |||||||    
T  38978607 aataagaagagagaaaaacaaggttgtcactaaagttgtcatgaa-aggatgtacaaatatcattgctctttt 38978678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 198 - 262
Target Start/End: Complemental strand, 47530249 - 47530185
Alignment:
Q  198 ccaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||||| | |||||||||||||| |||||||| ||||||| || | |||||||||||||||    
T  47530249 ccaataagaagaaagaaaaacaaggttatcaccaaagttgtcatgaaatagatgtacaaatatca 47530185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 37149434 - 37149360
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||||||||| | ||||||||||||||||||  ||| ||||| | || | |||||||| |||||||||||||||    
T  37149434 accaataagaagaaagaaaaacaaggttgtcataaaagttgtcttgaaatagatgtacatatatcactactcttt 37149360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 41227187 - 41227252
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||||| |||||||||| ||||||||||| ||| || ||||||| ||| |||| ||||||||    
T  41227187 accaataagagtagagaaaaataaggttgtcacaaaaattttcatcaaatggttgtaaaaatatca 41227252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 48057456 - 48057391
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||  ||||||| |||  ||||||||| | |||||||||||||||    
T  48057456 accaataagaagagagaaaaacaaaattgtcactaaagatgtcatcaaatagatgtacaaatatca 48057391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 235 - 271
Target Start/End: Original strand, 48558913 - 48558949
Alignment:
Q  235 ttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||||||||||||||||||||||||| |||||||||    
T  48558913 ttgtcatcaattggatgtacaaatatcgctactcttt 48558949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 211 - 262
Target Start/End: Original strand, 116757 - 116808
Alignment:
Q  211 agaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||| ||| ||||||| || |||||||||||||||||    
T  116757 agaaaaacaagattgtcactaaagttgtcatgaaatggatgtacaaatatca 116808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 8326239 - 8326310
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    ||||||||| ||||||||| | | ||||||| ||| |||| || || ||||||||||||||||| |||||||    
T  8326239 caataagaagagagaaaaatacgattgtcactaaagttgttatgaaatggatgtacaaatatcattactctt 8326310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 32315938 - 32316008
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactact 267  Q
    ||||||||||| |||||||||||| |||||||| ||| ||||| |||| | | ||| ||||||||| ||||    
T  32315938 accaataagaagagagaaaaacaatgttgtcacaaaagttgtcgtcaaatagttgttcaaatatcattact 32316008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 212 - 262
Target Start/End: Complemental strand, 35004187 - 35004137
Alignment:
Q  212 gaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||||| ||||||| ||| ||||||| || |||||||||||||||||    
T  35004187 gaaaaacaagattgtcactaaagttgtcataaaatggatgtacaaatatca 35004137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 2347018 - 2346953
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| || | ||||||| ||||||||||| ||| ||||||| || || ||||||||||||||    
T  2347018 accaataacaagaaagaaaaataaggttgtcactaaagttgtcataaaatgaatgtacaaatatca 2346953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 29609824 - 29609771
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||| ||||||| |||||||||||| ||||||| || | |||||||||||||||    
T  29609824 agaggaaaacaaagttgtcaccaaagttgtcattaaattgatgtacaaatatca 29609771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 234
Target Start/End: Original strand, 38990213 - 38990250
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaat 234  Q
    |||||||| ||||||||||||||||||||||| |||||    
T  38990213 accaataaaaatagagaaaaacaaggttgtcatcaaat 38990250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 39369414 - 39369479
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||||||| |||||||| ||| ||||| | || |||||||  ||||||||    
T  39369414 accaataagaaaagagaaaaacaaagttgtcactaaagttgtccttaaatggatgtcaaaatatca 39369479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 64; Significance: 8e-28; HSPs: 37)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 102 - 272
Target Start/End: Complemental strand, 28623178 - 28623007
Alignment:
Q  102 aatgatatttggataatcattatgtgataattttttgacaannnnnnnnctcatactcacataagattcttattctctcactccattgnnnnnnnaccaa 201  Q
    ||||||||||| | || ||||||||||||| ||||||||||         ||||||||| || ||||| |||||||||| ||||||||       |||||    
T  28623178 aatgatatttgtacaaccattatgtgataactttttgacaactttctctttcatactcatatgagatttttattctctctctccattgtttttg-accaa 28623080  T
Q  202 taagaatagagaaaaacaaggttgtcaccaaatttgtcatca--attggatgtacaaatatcactactctttt 272  Q
    |||||| |||||||| |||||||||||||||| |||||||||  |||||||||||||||||||||||||||||    
T  28623079 taagaaaagagaaaagcaaggttgtcaccaaagttgtcatcaatattggatgtacaaatatcactactctttt 28623007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 2597119 - 2597046
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||    
T  2597119 accaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattgaatgtacaaatatcactactctt 2597046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 37562100 - 37562031
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactac 266  Q
    ||||||||||| |||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||    
T  37562100 accaataagaagagagaaaaacaaggttgtcatcaaagttgtcatcaattggatgtacaaatatcactac 37562031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 200 - 269
Target Start/End: Original strand, 37343492 - 37343561
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||| |||||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  37343492 aataagaaaagagaaaatcaaggttgtcaccaaagttatcatcaattggatgtacaaatatcactactct 37343561  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 30129521 - 30129588
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcact 264  Q
    ||||||||||| |||||||| ||| |||||||||||| ||||||||||||||||||||||||||||||    
T  30129521 accaataagaagagagaaaagcaaagttgtcaccaaagttgtcatcaattggatgtacaaatatcact 30129588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 36497773 - 36497846
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    |||||||| || |||||||||||||||||| | |||| |||||||||||| |||||||||||||||||||||||    
T  36497773 accaataaaaagagagaaaaacaaggttgttatcaaagttgtcatcaattagatgtacaaatatcactactctt 36497846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 11139008 - 11139080
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||| || | |||||||||| |||||||||||| |||||||||||| ||||||||||||||||||||||    
T  11139008 accaataaaaagatagaaaaacaaagttgtcaccaaagttgtcatcaatttgatgtacaaatatcactactct 11139080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 5925167 - 5925238
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||||||||||||| ||||||||||  ||| |||||||||| |||||||||| ||||||||||||    
T  5925167 accaataagaatagagaaaaataaggttgtcataaaagttgtcatcaaatggatgtacatatatcactactc 5925238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 30927890 - 30927825
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||| || |||||||||||||||||    
T  30927890 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatca 30927825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 5924922 - 5924993
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||| ||||||||| ||||||||||  ||| |||||||||| |||||||||| ||||||||||||    
T  5924922 accaataagaagagagaaaaataaggttgtcatgaaagttgtcatcaaatggatgtacatatatcactactc 5924993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 36064142 - 36064213
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    |||||||| || ||| |||| |||| ||||||||||| || |||||||||||||||||||||||||||||||    
T  36064142 accaataaaaagagataaaagcaagtttgtcaccaaagttatcatcaattggatgtacaaatatcactactc 36064213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 264
Target Start/End: Complemental strand, 34765809 - 34765742
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcact 264  Q
    |||||||| || ||||||||  ||||||||||| ||| |||||||||||| |||||||||||||||||    
T  34765809 accaataaaaaaagagaaaagtaaggttgtcactaaaattgtcatcaattagatgtacaaatatcact 34765742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 41273627 - 41273702
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||||||||| |||||||||||||||||| || ||| |||||||  | ||||||||||||||||| | |||||||    
T  41273627 accaataagaagagagaaaaacaaggttgttactaaagttgtcatggaatggatgtacaaatatcattgctctttt 41273702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 209 - 271
Target Start/End: Original strand, 11089701 - 11089763
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    |||||||||||| |||||||||||| ||||||| || ||||||||||||||||| | ||||||    
T  11089701 agagaaaaacaaagttgtcaccaaaattgtcattaaatggatgtacaaatatcattgctcttt 11089763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 36593742 - 36593680
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  36593742 aataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 36593680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 7129645 - 7129716
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||||||| |||||||||||| ||||||| |||| |||| || || || |||||||||||||||||||||    
T  7129645 accaataagaagagagaaaaacaaagttgtcatcaaagttgt-atgaaatgaatgtacaaatatcactactct 7129716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 20284821 - 20284884
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||| ||||||||| ||||||||||| ||| |||||||||| ||| ||| |||||||||    
T  20284821 caataagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatca 20284884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 21071450 - 21071513
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||| ||||||||| ||||||||||| ||| |||||||||| ||| ||| |||||||||    
T  21071450 caataagaagagagaaaaagaaggttgtcacaaaagttgtcatcaaatggttgttcaaatatca 21071513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 272
Target Start/End: Original strand, 43587765 - 43587828
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    |||||||||||| |||||||||||| ||||||| || ||||| ||||||||||| | |||||||    
T  43587765 agagaaaaacaaagttgtcaccaaagttgtcattaaatggatatacaaatatcattgctctttt 43587828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 19723162 - 19723100
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| ||||||||||||||||||||| ||| ||||||| |  | |||||||||||||||    
T  19723162 aataagaagagagaaaaacaaggttgtcactaaagttgtcatgatatagatgtacaaatatca 19723100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 41293680 - 41293616
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||| ||||||| ||| |||||||  | |||||||||||||||||    
T  41293680 accaataagaagagagaaaaacaag-ttgtcactaaagttgtcatggaatggatgtacaaatatca 41293616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 43602370 - 43602317
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||| |||||| |||||||||||| ||||||| || |||||||||||||||||    
T  43602370 agagagaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatca 43602317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 6656296 - 6656236
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaata 259  Q
    ||||||||| ||||||||||||||||||||| ||| || ||||  | ||||||||||||||    
T  6656296 caataagaagagagaaaaacaaggttgtcactaaaattatcatggaatggatgtacaaata 6656236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 199 - 259
Target Start/End: Complemental strand, 6736698 - 6736638
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaata 259  Q
    ||||||||| ||||||||||||||||||||| ||| || ||||  | ||||||||||||||    
T  6736698 caataagaagagagaaaaacaaggttgtcactaaaattatcatggaatggatgtacaaata 6736638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 10344440 - 10344512
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||| || | ||||||||||||||||||  ||| |||| ||||| | |||||||| |||||||||||||    
T  10344440 accaataaaaagaaagaaaaacaaggttgtcataaaagttgttatcaaatagatgtacatatatcactactct 10344512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 1065529 - 1065604
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||| ||||| | |||||||||||||| |||| ||| |||||||  | ||||||||||||||||| | |||||||    
T  1065529 accaaaaagaagatagaaaaacaaggttatcactaaagttgtcatggaatggatgtacaaatatcattgctctttt 1065604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 6825236 - 6825173
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatat 260  Q
    ||||||||||| ||||||||| ||||||| ||||||| ||||||  || | |||||||||||||    
T  6825236 accaataagaagagagaaaaataaggttgacaccaaagttgtcaataaatagatgtacaaatat 6825173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 13565477 - 13565402
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||||||||||| |||||| |||||||||||  ||| |||| || || | ||||||||||||||| | |||||||    
T  13565477 accaataagaataaagaaaagcaaggttgtcattaaagttgtgattaaattgatgtacaaatatcattgctctttt 13565402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 212 - 267
Target Start/End: Original strand, 41519986 - 41520041
Alignment:
Q  212 gaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactact 267  Q
    ||||||||||||| |||||||| || || ||||||  |||||||||||||||||||    
T  41519986 gaaaaacaaggttatcaccaaaattatcgtcaattaaatgtacaaatatcactact 41520041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 6746000 - 6745926
Alignment:
Q  199 caataagaatagagaaaaac-aaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||||||| |||||||||| ||||||||||| ||| |||||||  | |||||||||||||| || | |||||||    
T  6746000 caataagaagagagaaaaactaaggttgtcactaaaattgtcatggaatggatgtacaaataccattgctctttt 6745926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 33817269 - 33817334
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| || ||||||||||||| ||||||| ||| |||| || || | |||||||||||||||    
T  33817269 accaataaaaagagagaaaaacaagattgtcactaaaattgttatgaaatagatgtacaaatatca 33817334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 34972189 - 34972242
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||||  ||||||||||| ||||||| || | |||||||||||||||    
T  34972189 agagaaaaacaaaattgtcaccaaagttgtcattaaatagatgtacaaatatca 34972242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 35595322 - 35595387
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||| |||||||||||||||| || |||| |    |||||||||||||||    
T  35595322 accaataagaagagagaaaagcaaggttgtcaccaaacttatcattagacagatgtacaaatatca 35595387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 37568571 - 37568506
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| | |||||||||| |||||||| ||| || | || || |||||||||||||||||    
T  37568571 accaataagaaaaaagaaaaacaatgttgtcactaaagttataatgaaatggatgtacaaatatca 37568506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 38504294 - 38504347
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||||  ||||||||||| |||| || || |||||||||||||||||    
T  38504294 agagaaaaacaaaattgtcaccaaaattgtaattaaatggatgtacaaatatca 38504347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 14029310 - 14029270
Alignment:
Q  102 aatgatatttggataatcattatgtgataattttttgacaa 142  Q
    ||||||||||| ||||||| | |||||||||||||||||||    
T  14029310 aatgatatttgtataatcaatttgtgataattttttgacaa 14029270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Complemental strand, 42659481 - 42659441
Alignment:
Q  102 aatgatatttggataatcattatgtgataattttttgacaa 142  Q
    ||||||||||| | ||||||||||||||| |||||||||||    
T  42659481 aatgatatttgtacaatcattatgtgatatttttttgacaa 42659441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 64; Significance: 8e-28; HSPs: 42)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 64; E-Value: 8e-28
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 54233460 - 54233389
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  54233460 accaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactc 54233389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 23906946 - 23906874
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  23906946 accaataagaagagagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactct 23906874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 51717553 - 51717628
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||| ||||| |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||| ||||    
T  51717553 accaacaagaagagagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactttttt 51717628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 200 - 268
Target Start/End: Complemental strand, 53932347 - 53932279
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    |||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  53932347 aataagaagatagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactc 53932279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 200 - 268
Target Start/End: Original strand, 1208060 - 1208128
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    |||||||| |||||||| ||| |||||||||||| ||| ||||||||||||||||||||||||||||||    
T  1208060 aataagaagagagaaaatcaaagttgtcaccaaagttgacatcaattggatgtacaaatatcactactc 1208128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 43441782 - 43441856
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    |||||||| || ||||||||  |||||||||  |||| |||||||||||||||||||||||||||||||||||||    
T  43441782 accaataaaaaaagagaaaagtaaggttgtcgtcaaagttgtcatcaattggatgtacaaatatcactactcttt 43441856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 199 - 268
Target Start/End: Complemental strand, 12044711 - 12044642
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||| ||| ||||  |||||||||| |||| ||||||||||||||||||||||||||||||||||    
T  12044711 caataagaagagaaaaaagtaaggttgtcatcaaagttgtcatcaattggatgtacaaatatcactactc 12044642  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 11327220 - 11327296
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttttc 273  Q
    ||||||||||| ||||| ||||||||||||||| ||| ||||||| || ||||||||||||||||| | ||||||||    
T  11327220 accaataagaagagagagaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatcattgctcttttc 11327296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 13159773 - 13159838
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  13159773 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 13159838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 36819068 - 36819133
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  36819068 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 36819133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 200 - 272
Target Start/End: Complemental strand, 50280043 - 50279971
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    |||||||| ||||||||||||||||||||  ||| ||||||| || ||||||||||||||||| | |||||||    
T  50280043 aataagaagagagaaaaacaaggttgtcattaaagttgtcatgaaatggatgtacaaatatcattgctctttt 50279971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 2009766 - 2009828
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatat 260  Q
    ||||||||||| |||||||| |||||||||||||||| ||||||| |||| |||||||||||||    
T  2009766 accaataagaagagagaaaagcaaggttgtcaccaaagttgtcataaatt-gatgtacaaatat 2009828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 35756092 - 35756155
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatat 260  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||| || | |||||||||||||    
T  35756092 accaataagaagagagaaaaacaaagttgtcaccaaagttgtcatgaaatagatgtacaaatat 35756155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 50652500 - 50652571
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||| |||||||| |||  |||||| |||| ||||||||||||  ||||||||||||||||||||    
T  50652500 accaataagaagagagaaaagcaaaattgtcatcaaaattgtcatcaattaaatgtacaaatatcactactc 50652571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 53102859 - 53102796
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  53102859 caataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 53102796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 34021422 - 34021348
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||||||||| |||||||||||| |||||||| ||| |||||||  | ||||||||||||||||| | ||||||    
T  34021422 accaataagaagagagaaaaacaaagttgtcactaaagttgtcatggaatggatgtacaaatatcattgctcttt 34021348  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 27937092 - 27937149
Alignment:
Q  213 aaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    |||| ||||||||||| |||| |||||||||||| ||||||||||||||| |||||||    
T  27937092 aaaagcaaggttgtcatcaaagttgtcatcaattagatgtacaaatatcattactctt 27937149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 32931877 - 32931812
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||  | || |||||||||||||||||    
T  32931877 accaataagaagagagaaaaacaaggttgtcactaaagttgttgtgaaatggatgtacaaatatca 32931812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 41877812 - 41877865
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||||||| |||||||||||| ||||||| || |||||||||||||||||    
T  41877812 agagaaaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatca 41877865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 213 - 270
Target Start/End: Original strand, 46626691 - 46626748
Alignment:
Q  213 aaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    |||| ||| |||||||||||| |||||||||||| ||||||||||||||| |||||||    
T  46626691 aaaagcaaagttgtcaccaaagttgtcatcaattagatgtacaaatatcattactctt 46626748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 52454051 - 52453986
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||| |||||| |||||||| ||| ||||||| || |||||||||||||||||    
T  52454051 accaataagaagagagagaaacaaagttgtcactaaagttgtcatgaaatggatgtacaaatatca 52453986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 199 - 267
Target Start/End: Complemental strand, 41348950 - 41348882
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactact 267  Q
    |||||| || ||||||||| ||||||||||||||| |||| ||||||| ||||| ||||||||| ||||    
T  41348950 caataaaaaaagagaaaaataaggttgtcaccaaaattgtgatcaattagatgtgcaaatatcattact 41348882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 260
Target Start/End: Complemental strand, 30400115 - 30400052
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatat 260  Q
    ||||||||||| ||||||||||||| ||||||| ||| |||||||  | |||||||||||||||    
T  30400115 accaataagaagagagaaaaacaagattgtcactaaagttgtcatggaatggatgtacaaatat 30400052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 50879707 - 50879782
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||||||||| |||||| ||||| |||||||| ||| |||||||  | ||||||||||||||||| | |||||||    
T  50879707 accaataagaagagagaacaacaaagttgtcactaaagttgtcatggaatggatgtacaaatatcatttctctttt 50879782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 209 - 267
Target Start/End: Complemental strand, 47056472 - 47056414
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactact 267  Q
    ||||||||  |||||||||| |||| |||||||||| ||||||||||||||||| ||||    
T  47056472 agagaaaagtaaggttgtcatcaaaattgtcatcaactggatgtacaaatatcattact 47056414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 35074112 - 35074039
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||||||| ||||||||| |||||||||| |||| ||| ||| || | |||||| | ||||||||||||||||    
T  35074112 caataagaaaagagaaaaataaggttgtcatcaaagttgccataaaatagatgtatatatatcactactctttt 35074039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 40419578 - 40419545
Alignment:
Q  235 ttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||||||||||||||||||||||||||    
T  40419578 ttgtcatcaattggatgtacaaatatcactactc 40419545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 40478234 - 40478181
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||| ||||||| |||||||||||| ||||||| || |||||||||||||||||    
T  40478234 agaggaaaacaaagttgtcaccaaaattgtcattaaatggatgtacaaatatca 40478181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 44855363 - 44855428
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||| ||| ||||||| ||| ||||||| || | |||||||||||||||    
T  44855363 accaataagaagagagaaaaataagattgtcactaaagttgtcatgaaattgatgtacaaatatca 44855428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 214 - 262
Target Start/End: Original strand, 14992204 - 14992252
Alignment:
Q  214 aaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||| |||||||||||| ||||||| || |||||||||||||||||    
T  14992204 aaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatca 14992252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 31206826 - 31206754
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||| || ||||||||| |||||||| | |||| ||||||| || | |||||||| |||||||||||||    
T  31206826 accaataaaaaaagagaaaaataaggttgtaatcaaagttgtcataaaattgatgtacatatatcactactct 31206754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 3957974 - 3957912
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| | ||||||||||||||||||| ||| ||||| |  | |||||||||||||||||    
T  3957974 aataagaagatagaaaaacaaggttgtcactaaagttgtcctggaatggatgtacaaatatca 3957912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 275
Target Start/End: Original strand, 28263657 - 28263735
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttttctt 275  Q
    ||||||||||| | ||||||| || |||||||| ||| ||||||| || |||||| |||||||||| | ||||| ||||    
T  28263657 accaataagaagaaagaaaaataaagttgtcactaaagttgtcatgaaatggatgaacaaatatcattgctcttctctt 28263735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 45295686 - 45295624
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    |||| ||||||| ||||||||||||  |||||| || ||||||||||||||||| | ||||||    
T  45295686 agaggaaaacaaagttgtcaccaaagctgtcattaaatggatgtacaaatatcattgctcttt 45295624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 8254143 - 8254204
Alignment:
Q  201 ataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||| ||||| ||| || |||||||| ||| ||||||| || |||||||||||||||||    
T  8254143 ataagaagagagagaaataatgttgtcactaaaattgtcatgaaatggatgtacaaatatca 8254204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 20714355 - 20714420
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| | ||||||| ||||||||||| ||| || ||||  | |||||||||||||||||    
T  20714355 accaataagaagatagaaaaataaggttgtcactaaaattatcatggaatggatgtacaaatatca 20714420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 30633773 - 30633708
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||| ||||||||||  ||| || |||| || | |||||||||||||||    
T  30633773 accaataagaagagagaaaaataaggttgtcattaaagttatcataaaatagatgtacaaatatca 30633708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 43900884 - 43900949
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||||||| |||||||| ||| ||||| | || |||||||  ||||||||    
T  43900884 accaataagaagagagaaaaacaaagttgtcactaaagttgtccttaaatggatgtcaaaatatca 43900949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 46344526 - 46344591
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| | ||||||| ||||||||||| ||| ||||| | || || ||||||||||||||    
T  46344526 accaataagaagaaagaaaaataaggttgtcactaaagttgtcgtgaaatgaatgtacaaatatca 46344591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 230 - 270
Target Start/End: Original strand, 28884613 - 28884653
Alignment:
Q  230 caaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    |||| |||| |||||||||||||||||||||||||| ||||    
T  28884613 caaagttgtgatcaattggatgtacaaatatcactattctt 28884653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 47683902 - 47683974
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||||||| ||||||| | ||||||||| | ||| ||||||  || ||| ||||||||||||| ||||||    
T  47683902 accaataagaagagagaaagagaaggttgtctcaaaagttgtcacaaaatggttgtacaaatatcattactct 47683974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 312 - 356
Target Start/End: Original strand, 53221956 - 53222000
Alignment:
Q  312 tcatgaacttaactcagttgatatacacattgtataatatatgta 356  Q
    |||||||||||||||||||||||   ||| |||||||||||||||    
T  53221956 tcatgaacttaactcagttgataaggacaatgtataatatatgta 53222000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 63; Significance: 3e-27; HSPs: 34)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 17489460 - 17489534
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||||||||| ||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||    
T  17489460 accaataagaagagagaaaaacaagattgtcaccaaagttgtcatcaattggatgtacaaatatcactactcttt 17489534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 8959272 - 8959346
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    |||||||| || ||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||    
T  8959272 accaataaaaagagagaaaaacaaggttgtcgccaaagttgtcatcaattggatgtacaaatatcactactcttt 8959346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 102 - 270
Target Start/End: Complemental strand, 39788773 - 39788606
Alignment:
Q  102 aatgatatttggataatcattatgtgataattttttgacaannnnnnnnctcatactcacataagattcttattctctcactccattgnnnnnnnaccaa 201  Q
    ||||||||||| | || |||||||||| || |||| |||||        ||||||||||||| ||||||||||| |||| |||||||        || ||    
T  39788773 aatgatatttgtacaaccattatgtgacaacttttggacaactttctctctcatactcacatgagattcttattttctctctccatt-atttttgacgaa 39788675  T
Q  202 taagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    |||||| |||||||| |||| ||||||||||| || ||||||||||| |||||||||||||||||||||    
T  39788674 taagaagagagaaaagcaagattgtcaccaaagttatcatcaattggttgtacaaatatcactactctt 39788606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 211 - 269
Target Start/End: Complemental strand, 372665 - 372607
Alignment:
Q  211 agaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||| |||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  372665 agaaaagcaaggttgtcaccaaaattatcatcaattggatgtacaaatatcactactct 372607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 4292895 - 4292967
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||||||||||||||||||| ||||||| |||| |||||||||| || |||| ||||||||| ||||||    
T  4292895 accaataagaatagagaaaaacaaagttgtcaacaaaattgtcatcaaatgaatgtccaaatatcattactct 4292967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 209 - 271
Target Start/End: Complemental strand, 8726333 - 8726271
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    |||||||| ||||| |||||||||| |||||||||||| ||||||||||||||| ||||||||    
T  8726333 agagaaaagcaaggctgtcaccaaagttgtcatcaattagatgtacaaatatcattactcttt 8726271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 275
Target Start/End: Original strand, 12512905 - 12512983
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttttctt 275  Q
    ||||||||||| ||||||||||||| ||||||| ||| |||||||  | ||||||||||||||||| | ||||||||||    
T  12512905 accaataagaagagagaaaaacaagattgtcactaaagttgtcatggaatggatgtacaaatatcattgctcttttctt 12512983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 3263467 - 3263402
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  3263467 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 3263402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 15622156 - 15622221
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  15622156 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 15622221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 33823653 - 33823588
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  33823653 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 33823588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 199 - 272
Target Start/End: Complemental strand, 41984238 - 41984165
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||||||| ||| ||||| ||  ||||||||||| ||||||||||||  ||||||||||||||||||||||||    
T  41984238 caataagaagagaaaaaaataaaattgtcaccaaagttgtcatcaattaaatgtacaaatatcactactctttt 41984165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 199 - 271
Target Start/End: Complemental strand, 36548337 - 36548265
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    |||||| ||||||||||||||||||||||| |||| ||||||| |  ||||||||||||||||| | ||||||    
T  36548337 caataaaaatagagaaaaacaaggttgtcatcaaagttgtcattagatggatgtacaaatatcattgctcttt 36548265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 200 - 271
Target Start/End: Complemental strand, 3154599 - 3154528
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||| || ||||||||| || |||||||||||| ||||||||||||  |||||||||||||| ||||||||    
T  3154599 aataaaaagagagaaaaataaagttgtcaccaaaattgtcatcaattaaatgtacaaatatcattactcttt 3154528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 30574336 - 30574261
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||||||||| |||||||||||| |||||||| ||| |||||||  | ||||||||||||||||| | |||||||    
T  30574336 accaataagaagagagaaaaacaaagttgtcactaaaattgtcatggaatggatgtacaaatatcattgctctttt 30574261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 7077286 - 7077233
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||||||| |||||||||||| ||||||| || |||||||||||||||||    
T  7077286 agagaaaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatca 7077233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 12401304 - 12401365
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaat 258  Q
    ||||||||||| ||||||||| ||||||||||| ||| ||||||| || |||||||||||||    
T  12401304 accaataagaagagagaaaaataaggttgtcactaaagttgtcatgaaatggatgtacaaat 12401365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 273
Target Start/End: Original strand, 9594590 - 9594666
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttttc 273  Q
    ||||||||||| ||||| ||| ||||||||||| ||| |||||||  | ||||||||||||||||| | ||||||||    
T  9594590 accaataagaagagagagaaataaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctcttttc 9594666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 11464082 - 11464008
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    |||||||| || ||||||||||||||||||||| ||| |||| ||  | ||||||||||||||||| | ||||||    
T  11464082 accaataaaaagagagaaaaacaaggttgtcactaaagttgttatggaatggatgtacaaatatcattgctcttt 11464008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 9596773 - 9596708
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||| ||||||| ||| |||||||  | || ||||||||||||||    
T  9596773 accaataagaagagagaaaaacaagattgtcactaaagttgtcatggaatgaatgtacaaatatca 9596708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 14914482 - 14914554
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    ||||||||||| ||| |||||||| ||||||| |||| || | || || |||||||||||||||||||||||||    
T  14914482 accaataagaagagataaaaacaaagttgtcatcaaagttat-atgaaatggatgtacaaatatcactactctt 14914554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 22920451 - 22920386
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| | | |||||||  | | |||||||||||||||    
T  22920451 accaataagaagagagaaaaacaaggttgtcactatagttgtcatgtaatagatgtacaaatatca 22920386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 240
Target Start/End: Original strand, 28501729 - 28501772
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtca 240  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||    
T  28501729 accaataagaagagagaaaaacaaggttgtcactaaagttgtca 28501772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 230 - 268
Target Start/End: Complemental strand, 14070537 - 14070499
Alignment:
Q  230 caaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    |||| |||||||||| |||||||||||||||||||||||    
T  14070537 caaagttgtcatcaaatggatgtacaaatatcactactc 14070499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 315 - 356
Target Start/End: Original strand, 689548 - 689589
Alignment:
Q  315 tgaacttaactcagttgatatacacattgtataatatatgta 356  Q
    |||||||||||||||||||||  ||| |||||||||||||||    
T  689548 tgaacttaactcagttgatatggacaatgtataatatatgta 689589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 262
Target Start/End: Original strand, 4954582 - 4954643
Alignment:
Q  201 ataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||| ||||||||||||||||||||| ||| |||| ||  | |||||||| ||||||||    
T  4954582 ataagaagagagaaaaacaaggttgtcactaaagttgttatagaatggatgtagaaatatca 4954643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 12417738 - 12417803
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||| ||||| ||||||| |||| |||||||||||| ||||| | || | |||||||||||||||    
T  12417738 accaaaaagaagagagaaacacaaagttgtcaccaaagttgtcgtgaaatagatgtacaaatatca 12417803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 19271971 - 19272036
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||||||| ||| |||| ||| |||||||  | | |||||||||||||||    
T  19271971 accaataagaagagagaaaaacaaagttatcactaaaattgtcatataatagatgtacaaatatca 19272036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 25345450 - 25345515
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||| ||| ||||||| ||| |||| ||  | |||||||||||||||||    
T  25345450 accaataagaagagagaaaaataagattgtcactaaaattgttatggaatggatgtacaaatatca 25345515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 32634820 - 32634885
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||  || |||| ||| |||||||  | |||||||||||||||||    
T  32634820 accaataagaaaagagaaaaacaaaattatcactaaaattgtcatggaatggatgtacaaatatca 32634885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 229
Target Start/End: Original strand, 10522887 - 10522919
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcac 229  Q
    ||||||||||| |||||||||||||||||||||    
T  10522887 accaataagaagagagaaaaacaaggttgtcac 10522919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 22203819 - 22203891
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||||||| ||||||||  ||||||||||| ||| ||  |||||| ||| ||||||||||| | ||||||    
T  22203819 accaataagaagagagaaaaggaaggttgtcacaaaaattaccatcaaatggttgtacaaatattattactct 22203891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 26685431 - 26685383
Alignment:
Q  221 ggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||||||||| ||||| |||||| ||| ||||||||||| ||||||    
T  26685431 ggttgtcaccaaaattgtcttcaattagatatacaaatatcattactct 26685383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 221 - 269
Target Start/End: Complemental strand, 26955161 - 26955113
Alignment:
Q  221 ggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||||||||| ||||| |||||| ||| ||||||||||| ||||||    
T  26955161 ggttgtcaccaaaattgtcttcaattagatatacaaatatcattactct 26955113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 238 - 270
Target Start/End: Complemental strand, 27005407 - 27005375
Alignment:
Q  238 tcatcaattggatgtacaaatatcactactctt 270  Q
    ||||||||||||| |||||||||||||||||||    
T  27005407 tcatcaattggatatacaaatatcactactctt 27005375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 63; Significance: 3e-27; HSPs: 40)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 198 - 268
Target Start/End: Original strand, 15638243 - 15638313
Alignment:
Q  198 ccaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  15638243 ccaataagaagagagaaaaacaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactc 15638313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 18568774 - 18568701
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    ||||||||||| | |||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  18568774 accaataagaagatagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcactactctt 18568701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 102 - 268
Target Start/End: Original strand, 20056400 - 20056565
Alignment:
Q  102 aatgatatttggataatcattatgtgataattttttgacaannnnnnnnctcatactcacataagattcttattctctcactccattgnnnnnnnaccaa 201  Q
    ||||||||||| | ||  ||||||| ||||||||| |||||        |||||| |||||| ||||||||||| |||| ||| ||||       |||||    
T  20056400 aatgatatttgtacaactattatgttataatttttggacaactttctctctcatagtcacatgagattcttattttctctctcaattgtttttg-accaa 20056498  T
Q  202 taagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    |||||| |||||||| |||| ||||||||||| ||||||||||||||||||||||||||||||||||    
T  20056499 taagaagagagaaaagcaagattgtcaccaaagttgtcatcaattggatgtacaaatatcactactc 20056565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 2193768 - 2193697
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||| ||||||||||||| |||||| |||| ||||||||||||||||||||||||||||||||||    
T  2193768 accaataagaagagagaaaaacaagattgtcatcaaagttgtcatcaattggatgtacaaatatcactactc 2193697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 32901441 - 32901513
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||| || ||||||||||||| ||||||||||| || ||||||||||||||||||||||||||||||||    
T  32901441 accaataaaaagagagaaaaacaagattgtcaccaaaattatcatcaattggatgtacaaatatcactactct 32901513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 199 - 269
Target Start/End: Complemental strand, 33484063 - 33483993
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||||| ||||||||  ||||||||||||||| |||||||||||||||||||||||||||| ||||||    
T  33484063 caataagaagagagaaaagtaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcattactct 33483993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 36728581 - 36728507
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||||||||| |||||||||||| |||||||||||| ||||||||||||||||||  ||||||||||| |||||    
T  36728581 accaataagaagagagaaaaacaaagttgtcaccaaagttgtcatcaattggatgtgtaaatatcactattcttt 36728507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 20632607 - 20632535
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||| ||| ||| ||||| || |||||||||||| |||||||||||||||||||||||||||||||||||    
T  20632607 accaataggaagagaaaaaaataaagttgtcaccaaaattgtcatcaattggatgtacaaatatcactactct 20632535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 199 - 263
Target Start/End: Original strand, 8681055 - 8681119
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcac 263  Q
    ||||||||| ||  |||| |||||||||||||||| |||||||||||||||||||||||||||||    
T  8681055 caataagaagaggaaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcac 8681119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 265
Target Start/End: Original strand, 41495125 - 41495193
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcacta 265  Q
    ||||||||||| |||||||||||| |||||||||||| || ||||||||| ||| ||||||||||||||    
T  41495125 accaataagaagagagaaaaacaaagttgtcaccaaaattatcatcaattagatatacaaatatcacta 41495193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 199 - 270
Target Start/End: Original strand, 32079223 - 32079294
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    ||||||||| ||||||||||||||||||||| ||| |||| || || || ||||||||||||||||||||||    
T  32079223 caataagaaaagagaaaaacaaggttgtcactaaagttgttatgaaatgtatgtacaaatatcactactctt 32079294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 42178009 - 42177934
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||||||||| |||||||||||| ||||| |||||| || |||||||||| || ||||||||||||| |||||||    
T  42178009 accaataagaagagagaaaaacaaagttgttaccaaagttatcatcaattgaatatacaaatatcactgctctttt 42177934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 5208286 - 5208212
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | ||||||||||||||||| | ||||||    
T  5208286 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatcattgctcttt 5208212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 27001368 - 27001303
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  27001368 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 27001303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 40629316 - 40629240
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcat--caattggatgtacaaatatcactactcttt 271  Q
    ||||||||||| |||||||| |||| ||||||||||| || ||||  ||||||||||||||||||||| ||||||||    
T  40629316 accaataagaaaagagaaaagcaagattgtcaccaaagttatcatatcaattggatgtacaaatatcattactcttt 40629240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 47106023 - 47106088
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  47106023 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 47106088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 266
Target Start/End: Complemental strand, 55642564 - 55642495
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactac 266  Q
    |||||||| || ||| |||| |||||||||||||||| || |||| ||||||||||||||||||||||||    
T  55642564 accaataaaaagagataaaagcaaggttgtcaccaaagttatcattaattggatgtacaaatatcactac 55642495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 13182443 - 13182515
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||| || ||||||||||||| || ||| |||| |||||||||||| ||||||||||||||| ||||||    
T  13182443 accaataaaaaaagagaaaaacaagattatcatcaaagttgtcatcaatttgatgtacaaatatcattactct 13182515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 200 - 262
Target Start/End: Complemental strand, 44368158 - 44368096
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| ||||||||| ||||||||||| ||| ||||||| || |||||||||||||||||    
T  44368158 aataagaagagagaaaaataaggttgtcactaaagttgtcatgaaatggatgtacaaatatca 44368096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 8026723 - 8026658
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||||||| |||||||| ||| |||||||  | |||||||||||||||||    
T  8026723 accaataagaagagagaaaaacaaagttgtcactaaagttgtcatggaatggatgtacaaatatca 8026658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 9032892 - 9032957
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| || ||||||||||||||||||||| ||| |||| || || |||||||||||||||||    
T  9032892 accaataaaaaaagagaaaaacaaggttgtcactaaagttgtaatgaaatggatgtacaaatatca 9032957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 51377252 - 51377187
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||   | |||||||||||||||||    
T  51377252 accaataagaagagagaaaaacaaggttgtcactaaagttgtcaaggaatggatgtacaaatatca 51377187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 269
Target Start/End: Original strand, 34259938 - 34260010
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||||||| ||||||||| ||| ||||||| ||| |||||| ||| ||| ||||||||||||| ||||||    
T  34259938 accaataagaagagagaaaaagaagtttgtcacaaaagttgtcaccaaatggttgtacaaatatcattactct 34260010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 209 - 268
Target Start/End: Complemental strand, 19720588 - 19720529
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||| |||||||||||||| |||| ||||| |||| |||||||||| ||||||||||||    
T  19720588 agagagaaacaaggttgtcatcaaagttgtcttcaaatggatgtacatatatcactactc 19720529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 3223101 - 3223175
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||||||||| ||||||||| ||||||||||| ||| || ||||  | ||||||||||||||||| | ||||||    
T  3223101 accaataagaagagagaaaaagaaggttgtcactaaagttttcatggaatggatgtacaaatatcattgctcttt 3223175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 24019918 - 24019865
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||| ||||||||||||||||||| ||||||| || | |||||||||||||||    
T  24019918 agagagaaacaaggttgtcaccaaagttgtcattaaatagatgtacaaatatca 24019865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 31221525 - 31221590
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||| ||||||| ||| |||||||  | | |||||||||||||||    
T  31221525 accaataagaagagagaaaaacaagattgtcactaaaattgtcatggaattgatgtacaaatatca 31221590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 52669568 - 52669503
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| || ||||||||||||| ||||||| ||| | ||||| || |||||||||||||||||    
T  52669568 accaataaaaagagagaaaaacaagattgtcactaaagtggtcataaaatggatgtacaaatatca 52669503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 13267437 - 13267364
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||||||||| |||||||||||| ||| ||| |||| |||| || || | ||| ||||||||||||||||||||    
T  13267437 accaataagaagagagaaaaacaaagttttcatcaaagttgt-atgaaatcgatttacaaatatcactactcttt 13267364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 251
Target Start/End: Original strand, 25936352 - 25936406
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatg 251  Q
    ||||||||||| ||||||||||||| ||||||| ||| || ||||||||| ||||    
T  25936352 accaataagaaaagagaaaaacaagattgtcacaaaagttatcatcaattagatg 25936406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 235 - 268
Target Start/End: Complemental strand, 924995 - 924962
Alignment:
Q  235 ttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||||| ||||||||||||||||||||    
T  924995 ttgtcatcaattgaatgtacaaatatcactactc 924962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 1796477 - 1796541
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||||||| | |||||| ||| |||||||  | |||||||||||||||||    
T  1796477 accaataagaagagagaaaaacaaag-tgtcactaaagttgtcatggaatggatgtacaaatatca 1796541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 24235432 - 24235497
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||  ||  ||||||| ||| ||||||| || |||||||||||||||||    
T  24235432 accaataagaagagagaaaattaaaattgtcactaaagttgtcatgaaatggatgtacaaatatca 24235497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 37022373 - 37022438
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| || | ||||||||||| || |||| ||| ||||||| || |||||||||||||||||    
T  37022373 accaataaaaaaaaagaaaaacaagattatcactaaagttgtcatgaaatggatgtacaaatatca 37022438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 45548743 - 45548678
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| |||||| ||||||||||| ||||| ||| ||||||| |  | |||||||||||||||    
T  45548743 accaataaaaatagaaaaaaacaaggtcgtcactaaagttgtcattagatagatgtacaaatatca 45548678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 200 - 269
Target Start/End: Complemental strand, 47519676 - 47519607
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||| | |||||||||||||||||| | || || ||||  | ||||||||||||||||||| ||||    
T  47519676 aataagaagaaagaaaaacaaggttgtcaactaagttatcattcaatggatgtacaaatatcactgctct 47519607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 51224785 - 51224732
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||| |||||||  ||||||||||| ||||||| || |||||||||||||||||    
T  51224785 agaggaaaacaaaattgtcaccaaagttgtcattaaatggatgtacaaatatca 51224732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 56025380 - 56025433
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| ||| |||||||||||| ||||||| || || ||||||||||||||    
T  56025380 agagaaaatcaaagttgtcaccaaagttgtcattaaatgaatgtacaaatatca 56025433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 13252541 - 13252581
Alignment:
Q  102 aatgatatttggataatcattatgtgataattttttgacaa 142  Q
    ||||||||||  ||||||||| |||||||||||||||||||    
T  13252541 aatgatatttatataatcattttgtgataattttttgacaa 13252581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 197 - 241
Target Start/End: Original strand, 40258313 - 40258357
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcat 241  Q
    |||||||| || ||||||||||||| ||||||||||| |||||||    
T  40258313 accaataaaaagagagaaaaacaagattgtcaccaaagttgtcat 40258357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 61; Significance: 5e-26; HSPs: 30)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 42843303 - 42843231
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||    
T  42843303 accaataagaagagagaaaaacaaggttgtcaccaaaattatcatcaattggatgtacaaatatcactactct 42843231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 197 - 267
Target Start/End: Complemental strand, 50777382 - 50777312
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactact 267  Q
    ||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||    
T  50777382 accaataagaagagagaaaaacaaggttgtcaccaaaattgtcatcaattggatgtacaaatatcattact 50777312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 46902714 - 46902790
Alignment:
Q  197 accaataagaatagag-aaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||||||||| |||| ||||| || |||||||| ||| ||||||||||||||||||||||||||||||||||||||    
T  46902714 accaataagaagagaggaaaaaaaaagttgtcactaaaattgtcatcaattggatgtacaaatatcactactctttt 46902790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 50797892 - 50797967
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    |||||||| || ||| ||||||||| ||||||||||| || ||||||||| |||||||||||||||||||||||||    
T  50797892 accaataaaaagagataaaaacaagtttgtcaccaaagttatcatcaattagatgtacaaatatcactactctttt 50797967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 270
Target Start/End: Original strand, 25130815 - 25130888
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||| || | ||||||||||||||||| |||||    
T  25130815 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatagatgtacaaatatcactgctctt 25130888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 198 - 268
Target Start/End: Complemental strand, 51193091 - 51193021
Alignment:
Q  198 ccaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    |||||||||| |||||||||||| |||||||  ||| |||||||||| |||||||||| ||||||||||||    
T  51193091 ccaataagaagagagaaaaacaatgttgtcatgaaagttgtcatcaaatggatgtacatatatcactactc 51193021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 211 - 268
Target Start/End: Complemental strand, 43457765 - 43457708
Alignment:
Q  211 agaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    |||||||||||||||||| |||||||||| |||| |||||||||| ||||||||||||    
T  43457765 agaaaaacaaggttgtcatcaaatttgtcttcaaatggatgtacatatatcactactc 43457708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 16480053 - 16480109
Alignment:
Q  213 aaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||||||||| |||||| |||||| |||||| |||||||||||||||||||||    
T  16480053 aaaaacaaggttgttaccaaagttgtcaacaattgaatgtacaaatatcactactct 16480109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 197 - 277
Target Start/End: Complemental strand, 29489318 - 29489238
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttttcttaa 277  Q
    ||||||||||| | ||||||||||||||||||| ||| ||||||| || |  |||||||||||||||| ||||||| ||||    
T  29489318 accaataagaagaaagaaaaacaaggttgtcactaaagttgtcatgaaatatatgtacaaatatcactgctctttttttaa 29489238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 223 - 270
Target Start/End: Original strand, 45305319 - 45305366
Alignment:
Q  223 ttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    ||||||||||| |||||||| |||||||||||||||||||||||||||    
T  45305319 ttgtcaccaaagttgtcatctattggatgtacaaatatcactactctt 45305366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 6829744 - 6829670
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||||||||| ||||||||||||| ||||||| ||| |||||||  | ||||||||||||||||| | ||||||    
T  6829744 accaataagaagagagaaaaacaagattgtcactaaagttgtcatggaatggatgtacaaatatcattgctcttt 6829670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 9011757 - 9011827
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactact 267  Q
    ||||||||||| ||||||||||||| ||||||| ||  ||||||| || ||||||||||||||||| ||||    
T  9011757 accaataagaagagagaaaaacaagattgtcactaacattgtcatgaaatggatgtacaaatatcattact 9011827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 13813670 - 13813735
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| |||| ||  | |||||||||||||||||    
T  13813670 accaataagaagagagaaaaacaaggttgtcactaaagttgttatggaatggatgtacaaatatca 13813735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 27578294 - 27578359
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||||||||||||||||||||||||| || ||| |||||||  | || ||||||||||||||    
T  27578294 accaataagaatagagaaaaacaaggttgttactaaaattgtcatggaatgaatgtacaaatatca 27578359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 219 - 268
Target Start/End: Complemental strand, 41459657 - 41459608
Alignment:
Q  219 aaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||||||| ||||||||||||| |||||||||||||| |||||    
T  41459657 aaggttgtcaccaaagttgtcatcaattgaatgtacaaatatcattactc 41459608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 197 - 265
Target Start/End: Complemental strand, 7078459 - 7078391
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcacta 265  Q
    |||||| |||| ||||| |||||||||||||| |||| ||||| |||| |||||||||| |||||||||    
T  7078459 accaattagaaaagagagaaacaaggttgtcatcaaagttgtcttcaaatggatgtacatatatcacta 7078391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 272
Target Start/End: Original strand, 19920874 - 19920949
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    ||||||||||| |||||||||||| |||||||||||| ||||| | || |||||||  |||||||| | |||||||    
T  19920874 accaataagaagagagaaaaacaaagttgtcaccaaagttgtccttaaatggatgtcaaaatatcattgctctttt 19920949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 213 - 268
Target Start/End: Original strand, 33660172 - 33660227
Alignment:
Q  213 aaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||||||||  ||| |||||||||| |||||||||| ||||||||||||    
T  33660172 aaaaacaaggttgtcatgaaagttgtcatcaaatggatgtacatatatcactactc 33660227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 34395879 - 34395804
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    |||||| |||| ||||| |||||| ||||||| |||| ||||| |||| ||||| |||| ||||||||||||||||    
T  34395879 accaattagaaaagagagaaacaaagttgtcatcaaagttgtcttcaaatggatatacatatatcactactctttt 34395804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 268
Target Start/End: Original strand, 5959521 - 5959559
Alignment:
Q  230 caaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    |||| ||||||||||||||||||||||||||||||||||    
T  5959521 caaagttgtcatcaattggatgtacaaatatcactactc 5959559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 259
Target Start/End: Complemental strand, 36669329 - 36669267
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaata 259  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | ||||| ||||||||    
T  36669329 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatttacaaata 36669267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 5383883 - 5383936
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||||||| |||||||||||| |||| || || |||||||||||||||||    
T  5383883 agagaaaaacaaagttgtcaccaaagttgtaattaaatggatgtacaaatatca 5383936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 26501407 - 26501472
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||  ||| |||||||  | | |||||||||||||||    
T  26501407 accaataagaagagagaaaaacaaggttgtcattaaagttgtcatgtaatagatgtacaaatatca 26501472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 270
Target Start/End: Complemental strand, 42829267 - 42829195
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    ||||||||||| ||||||||  | ||||||||||||| |||| || || ||| |||||||||||||||||||||    
T  42829267 accaataagaagagagaaaagaagggttgtcaccaaaattgttat-aaatggttgtacaaatatcactactctt 42829195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 102 - 142
Target Start/End: Original strand, 16479929 - 16479969
Alignment:
Q  102 aatgatatttggataatcattatgtgataattttttgacaa 142  Q
    ||||||||||| ||||||||||||||||||||||| |||||    
T  16479929 aatgatatttgtataatcattatgtgataatttttggacaa 16479969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 209 - 268
Target Start/End: Original strand, 26547358 - 26547417
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||| ||| |||||||||| |||| ||||| |||| |||||||||| ||||||||||||    
T  26547358 agagagaaataaggttgtcatcaaagttgtcttcaaatggatgtacatatatcactactc 26547417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 3291384 - 3291310
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||| ||||| ||||| |||||||||| |||  ||| |||||||  | ||||||||||||||||| ||||||||    
T  3291384 accaaaaagaagagagagaaacaaggttatcattaaaattgtcatggaatggatgtacaaatatcattactcttt 3291310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 49189158 - 49189105
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||| |||||||  ||||||||||| ||||||| || |||||||||||||||||    
T  49189158 agaggaaaacaaaattgtcaccaaagttgtcattaaatggatgtacaaatatca 49189105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 50035497 - 50035432
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| || ||||||||| || |||||||| ||| ||||||| || | |||||||||||||||    
T  50035497 accaataacaaaagagaaaaataaagttgtcactaaagttgtcatgaaatagatgtacaaatatca 50035432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 313 - 353
Target Start/End: Original strand, 2880439 - 2880479
Alignment:
Q  313 catgaacttaactcagttgatatacacattgtataatatat 353  Q
    |||||||||||||||||||||||| ||| | ||||||||||    
T  2880439 catgaacttaactcagttgatatagacaatatataatatat 2880479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 55; Significance: 2e-22; HSPs: 29)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 197 - 267
Target Start/End: Original strand, 38572051 - 38572121
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactact 267  Q
    ||||||||||| ||||||||||||||||||||||||| |||| |||||||| |||||||||||||||||||    
T  38572051 accaataagaagagagaaaaacaaggttgtcaccaaagttgttatcaattgaatgtacaaatatcactact 38572121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 36582368 - 36582433
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||| |||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  36582368 accaattagaatagagaaaaacaaggttgtcaccaaagttgtcatcaaatggatgtacaaatatca 36582433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 12192059 - 12192130
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    |||||||| ||||||||||| |||||||||||||||| || | |||||||||||||||||||||||||||||    
T  12192059 accaataaaaatagagaaaagcaaggttgtcaccaaagttattatcaattggatgtacaaatatcactactc 12192130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 201 - 270
Target Start/End: Complemental strand, 9695016 - 9694947
Alignment:
Q  201 ataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    |||| ||||||||||| |||||||||||||||| |||||||||||||||| ||||||||| |||||||||    
T  9695016 ataaaaatagagaaaagcaaggttgtcaccaaagttgtcatcaattggatttacaaatattactactctt 9694947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 268
Target Start/End: Original strand, 5962750 - 5962821
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||| |||||||||||| ||| |||||||| || ||||||||| |||||||||||||||||||||    
T  5962750 accaataagaagagagaaaaacaaagttatcaccaaaattatcatcaattagatgtacaaatatcactactc 5962821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 197 - 264
Target Start/End: Original strand, 12358425 - 12358492
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcact 264  Q
    |||||||| || | |||||| |||||||||||||||| ||||||||||||||||||||||||||||||    
T  12358425 accaataaaaagatagaaaagcaaggttgtcaccaaagttgtcatcaattggatgtacaaatatcact 12358492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 37966468 - 37966533
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| ||||||| || |||||||||||||||||    
T  37966468 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatgaaatggatgtacaaatatca 37966533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 197 - 269
Target Start/End: Complemental strand, 10550418 - 10550346
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||||||| ||||||||||||||| ||||||| |||| |||||||||| ||||||| ||||||||| ||||||    
T  10550418 accaataaaaatagagaaaaacaaagttgtcaacaaagttgtcatcaaatggatgtccaaatatcattactct 10550346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 199 - 270
Target Start/End: Complemental strand, 42141567 - 42141496
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctt 270  Q
    |||||||||||||||||||||||||||||| |||| || ||||||| | ||||| ||||||||| |||||||    
T  42141567 caataagaatagagaaaaacaaggttgtcaacaaagttatcatcaaatagatgtccaaatatcattactctt 42141496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 23048042 - 23047977
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  23048042 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 23047977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 260
Target Start/End: Original strand, 29168837 - 29168900
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatat 260  Q
    ||||||||||| ||||||||| || |||||||||||| ||||||||||||| ||| ||||||||    
T  29168837 accaataagaagagagaaaaataatgttgtcaccaaagttgtcatcaattgaatgcacaaatat 29168900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 268
Target Start/End: Complemental strand, 36909802 - 36909732
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactc 268  Q
    ||||||||||| |||||||||||| ||||||| |||| |||| || || |||||||||||||||||||||||    
T  36909802 accaataagaagagagaaaaacaaagttgtcatcaaagttgt-atgaaatggatgtacaaatatcactactc 36909732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 230 - 272
Target Start/End: Complemental strand, 5954423 - 5954381
Alignment:
Q  230 caaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  5954423 caaaattgtcatcaattggatgtacaaatatcactactctttt 5954381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 3196046 - 3195981
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||||||||||||| || ||| |||||||  | |||||||||||||||||    
T  3196046 accaataagaagagagaaaaacaaggttgttactaaagttgtcatggaatggatgtacaaatatca 3195981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 22353134 - 22353069
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||| |||||||| |||||||| || |||| || |||||||||||||||||    
T  22353134 accaataagaagagagaaatacaaggttatcaccaaaattatcattaaatggatgtacaaatatca 22353069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 33030061 - 33029996
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| ||||||||||||||||||||||| |||| ||||||| |  | |||||||||||||||    
T  33030061 accaataaaaatagagaaaaacaaggttgtcatcaaagttgtcattagatagatgtacaaatatca 33029996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 44484615 - 44484550
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||||||| |||||||| ||| ||||||| || | |||||||||||||||    
T  44484615 accaataagaagagagaaaaacaaagttgtcactaaagttgtcataaaattgatgtacaaatatca 44484550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 102 - 180
Target Start/End: Original strand, 5962642 - 5962720
Alignment:
Q  102 aatgatatttggataatcattatgtgataattttttgacaannnnnnnnctcatactcacataagattcttattctctc 180  Q
    ||||||||||| | ||||||||||||||||||||| |||||        ||||||||||||| ||||| ||||||||||    
T  5962642 aatgatatttgtacaatcattatgtgataatttttggacaactttatttctcatactcacatgagatttttattctctc 5962720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 200 - 262
Target Start/End: Original strand, 6885025 - 6885087
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| |||||||||||| |||||||| ||| ||||||| || || ||||||||||||||    
T  6885025 aataagaagagagaaaaacaaagttgtcactaaagttgtcatgaaatgaatgtacaaatatca 6885087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 197 - 271
Target Start/End: Complemental strand, 30192310 - 30192236
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    |||||||| || |||||||| ||||||| ||  | || || ||||||||||||||||||||||||| ||||||||    
T  30192310 accaataaaaaaagagaaaagcaaggttttcgtccaaattatcatcaattggatgtacaaatatcattactcttt 30192236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 4097068 - 4097121
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||||||||||||||||| |||| || || |||||| ||||||||||    
T  4097068 agagaaaaacaaggttgtcaccaaaattgttattaaatggatggacaaatatca 4097121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 27307204 - 27307139
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||| ||||||||||| ||| |||||||  | |||||||| ||||||||    
T  27307204 accaataagaagagagaaaaataaggttgtcactaaagttgtcatggaatggatgtataaatatca 27307139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 29871314 - 29871249
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||| |||||| |||||||||||| ||||||| || | |||| ||||||||||    
T  29871314 accaataagaagagagagaaacaaagttgtcaccaaagttgtcatgaaatagatggacaaatatca 29871249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 30413679 - 30413626
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| ||| |||||||||||| ||||||| || |||||||||||||||||    
T  30413679 agagaaaagcaaagttgtcaccaaaattgtcattaaatggatgtacaaatatca 30413626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 38246710 - 38246645
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||| ||||||||||||||| ||| |||||||  | | |||||||||||||||    
T  38246710 accaataagaagagagagaaacaaggttgtcactaaagttgtcatggaattgatgtacaaatatca 38246645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 200 - 272
Target Start/End: Original strand, 17826162 - 17826234
Alignment:
Q  200 aataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    |||||||| ||||||||||||||||||||  ||| ||||| | || | |||||||| ||||||||||| ||||    
T  17826162 aataagaagagagaaaaacaaggttgtcatgaaagttgtcttaaaatagatgtacatatatcactactttttt 17826234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 197 - 256
Target Start/End: Original strand, 36383574 - 36383633
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaa 256  Q
    ||||||||||| ||||||||||||||||||||| ||| |||| || || | |||||||||    
T  36383574 accaataagaagagagaaaaacaaggttgtcactaaagttgttatgaaattgatgtacaa 36383633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 34144511 - 34144446
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||| ||||||| ||| |||||||  | | || ||||||||||||    
T  34144511 accaataagaagagagaaaaacaagattgtcactaaagttgtcatggaattgaggtacaaatatca 34144446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 269
Target Start/End: Original strand, 31847660 - 31847716
Alignment:
Q  213 aaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    ||||||||||||||||  ||| |||||  ||| |||||||||| |||||||||||||    
T  31847660 aaaaacaaggttgtcatgaaagttgtctacaaatggatgtacatatatcactactct 31847716  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0522 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0522
Description:

Target: scaffold0522; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 2463 - 2398
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||||| || |||||||| |||| ||||||||||| || |||||||||||||||||||||||||    
T  2463 accaataaaaagagagaaaatcaagattgtcaccaaaattatcatcaattggatgtacaaatatca 2398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 147215 - 147150
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  147215 accaataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 147150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0049 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0049
Description:

Target: scaffold0049; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 197 - 272
Target Start/End: Complemental strand, 72130 - 72055
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactctttt 272  Q
    |||||||||||| ||||||| |||||||||||||||| |||||| ||  | ||||||||||||||| ||| |||||    
T  72130 accaataagaattgagaaaaccaaggttgtcaccaaagttgtcaccatatagatgtacaaatatcattaccctttt 72055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 199 - 262
Target Start/End: Complemental strand, 249099 - 249036
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||| ||||||||||||||||||||| ||| |||||||  | |||||||||||||||||    
T  249099 caataagaagagagaaaaacaaggttgtcactaaagttgtcatggaatggatgtacaaatatca 249036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0514 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0514
Description:

Target: scaffold0514; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 1455 - 1390
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||||||| |||||||| ||| |||||||  | |||||||||||||||||    
T  1455 accaataagaagagagaaaaacaaagttgtcactaaaattgtcatggaatggatgtacaaatatca 1390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0172 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: scaffold0172
Description:

Target: scaffold0172; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 17087 - 17152
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||| |||| ||||| |||||| |||||||||||| ||||||| || |||||||||||||||||    
T  17087 accaatcagaagagagagaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatca 17152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0332 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0332
Description:

Target: scaffold0332; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 230 - 269
Target Start/End: Original strand, 660 - 699
Alignment:
Q  230 caaatttgtcatcaattggatgtacaaatatcactactct 269  Q
    |||| |||||||||||||||||||||||||||||||||||    
T  660 caaagttgtcatcaattggatgtacaaatatcactactct 699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 199 - 262
Target Start/End: Original strand, 29897 - 29960
Alignment:
Q  199 caataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||||| || |||||||||||||||||| || ||| ||||||| || |||||||||||||||||    
T  29897 caataaaaagagagaaaaacaaggttgtaactaaagttgtcattaaatggatgtacaaatatca 29960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 209 - 262
Target Start/End: Original strand, 9554 - 9607
Alignment:
Q  209 agagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    |||| ||||||| |||||||||||| ||||||| || |||||||||||||||||    
T  9554 agaggaaaacaaagttgtcaccaaagttgtcattaaatggatgtacaaatatca 9607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0193 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0193
Description:

Target: scaffold0193; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 197 - 261
Target Start/End: Original strand, 24785 - 24849
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatc 261  Q
    ||||||||||| ||||||||| ||||||||||| ||| || |||| || | ||||||||||||||    
T  24785 accaataagaagagagaaaaataaggttgtcactaaaattatcatgaaatagatgtacaaatatc 24849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 197 - 271
Target Start/End: Original strand, 88920 - 88994
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatcactactcttt 271  Q
    ||||||||||| ||| ||||| ||||||||||| ||| || |||| |  ||||||||||||||||| | ||||||    
T  88920 accaataagaaaagaaaaaaataaggttgtcactaaagttatcatgagatggatgtacaaatatcattgctcttt 88994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0618 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0618
Description:

Target: scaffold0618; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Original strand, 3473 - 3538
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| | ||||||| ||||||||||| ||| ||||| | || || ||||||||||||||    
T  3473 accaataagaagaaagaaaaataaggttgtcactaaagttgtcgtgaaatgaatgtacaaatatca 3538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0085 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0085
Description:

Target: scaffold0085; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 197 - 262
Target Start/End: Complemental strand, 31259 - 31194
Alignment:
Q  197 accaataagaatagagaaaaacaaggttgtcaccaaatttgtcatcaattggatgtacaaatatca 262  Q
    ||||||||||| |||||||||||| |||||||| ||| || ||||  | | |||||||||||||||    
T  31259 accaataagaacagagaaaaacaaagttgtcactaaaattatcatgtaatagatgtacaaatatca 31194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 219 - 259
Target Start/End: Original strand, 72495 - 72535
Alignment:
Q  219 aaggttgtcaccaaatttgtcatcaattggatgtacaaata 259  Q
    |||||||||| | || |||||||||||||||||||||||||    
T  72495 aaggttgtcatccaaattgtcatcaattggatgtacaaata 72535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University