View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_high_6 (Length: 400)
Name: NF8050_high_6
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_high_6 |
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Alignment Details
Target: chr7 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 384
Target Start/End: Original strand, 44650331 - 44650697
Alignment:
| Q |
17 |
acaatatggaagcacaaattaaggacgtgaattaccataacaacaattcacctataaattatacaatatggaaggcagagaaagagcaaattaatcaaac |
116 |
Q |
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| T |
44650331 |
acaatatggaagcacaaattaaggacgtgaactaccataacaataatttacctataaattataca-tatggaaggcagagaaagagcaaattaatcaaac |
44650429 |
T |
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| Q |
117 |
attgaattatggagtacacaaagtgagaattcgggttcgagaagaatattggttgaaatggaaccaacgtttcaccgctattcttgttataataatctgg |
216 |
Q |
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| T |
44650430 |
attgaattatggagtacacaaagtgagaattcgggttcgagaagaatattgcttgaaatggaaccaacgtttcaccgctattcttgttataataatctgg |
44650529 |
T |
|
| Q |
217 |
aggtacataatatggaaatggtgttcctggtggaaaatatgaattttgtggtgggtatggagtcattggtggagattcacaattatttggacatggtgac |
316 |
Q |
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| T |
44650530 |
aggtacataatatggaaatggtgttcctggtggaaaatatgaattttgtggtgggtatggagtcattggtggagattcacaattatttggacatggtgac |
44650629 |
T |
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| Q |
317 |
tttggagctggtggaggtggagggcattcgacgattgctggtggcagaggaggtgatggcggtggcgt |
384 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
44650630 |
tttggagctggtggaggtggagggcattcgacgattgctggtggcagaggaggtgatggcggtggcgt |
44650697 |
T |
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