View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_high_8 (Length: 380)
Name: NF8050_high_8
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_high_8 |
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Alignment Details
Target: chr4 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 43529281 - 43529628
Alignment:
| Q |
17 |
gcgcactcgctagtcaatatttcggcttattcacaaactcgattagctcttcttcaattttccctctcatcgccgttgaatttgacactggtcaaaaccc |
116 |
Q |
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| T |
43529281 |
gcgcactcgctagtcaatatttcggcttattcacaaactcgattagctcttcttcaattttccctctcatcgccgttgaatttgacactggtcaaaaccc |
43529380 |
T |
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| Q |
117 |
tgagtttaatgataaagacagtaatcacatcggaattgatttgaataacatcgaatccaaaattcaaactcctgcagggtattataattccaccggaagc |
216 |
Q |
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| T |
43529381 |
tgagtttaatgataaagacagcaatcacatcggaattgatttgaataacatcgaatccaaaattcaaactcctgcagggtattataattccaccggaagc |
43529480 |
T |
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| Q |
217 |
ttcgttccggttcagatgaacactggggagaatattcgtgcgtggattgaatttgacggcgagaggttggagataaatgttactgttgctccggttggtg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43529481 |
ttcgttccggttcagatgaacactggggagaatattcgtgcgtggattgaatttgacggcgagaggttggagataaatgttactgttgctccggttggtg |
43529580 |
T |
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| Q |
317 |
tttcgaagcctttgaaaccgacgctatcttataatgattcgattatag |
364 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
43529581 |
tttcgaagcctttgaaaccgacgctatcttataatgattcgagtatag |
43529628 |
T |
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