View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_low_11 (Length: 362)
Name: NF8050_low_11
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_low_11 |
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Alignment Details
Target: chr7 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 11 - 346
Target Start/End: Original strand, 43462461 - 43462796
Alignment:
| Q |
11 |
gagaagaatcaattttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggagaaggggaattcggaactacttcactttg |
110 |
Q |
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| T |
43462461 |
gagaagaatcaattttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggagaaggggaatttggaactacttcactttg |
43462560 |
T |
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| Q |
111 |
tttggagaaatcaaccgggaaaaggtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggatggagattaag |
210 |
Q |
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| T |
43462561 |
tttggagaaatcaaccgggaaaacgtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggagggaaattaag |
43462660 |
T |
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| Q |
211 |
ataatgcatcacttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggag |
310 |
Q |
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| T |
43462661 |
ataatgcatcacttggttgggagtctaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggag |
43462760 |
T |
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| Q |
311 |
gtgagttgtttgataggattgtgaaaagaggttact |
346 |
Q |
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| T |
43462761 |
gtgagttgtttgataggattgtgaaaagaggttact |
43462796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 23 - 338
Target Start/End: Original strand, 43453034 - 43453349
Alignment:
| Q |
23 |
ttttgttgtcaaacaatggttcttttaaggaatactatgagttaggagatgaacttggagaaggggaattcggaactacttcactttgtttggagaaatc |
122 |
Q |
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| T |
43453034 |
ttttgttgacaaacaatggtccttttagggaattttataagttaggagatgaacttgggaaaggaaagtttggaactacttcactttgtttggagaaatc |
43453133 |
T |
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| Q |
123 |
aaccgggaaaaggtatgcatgcaaggtaatcccaaaggtgaaattgttagaagatgatgatgtagaggatgtgaggatggagattaagataatgcatcac |
222 |
Q |
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| T |
43453134 |
aaccaggaagacatacgcatgcaaagcaataccaaaggtaaaattgtttagagagaatgatatagaggatgtgaggagggagattgaaataatgcatcac |
43453233 |
T |
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| Q |
223 |
ttggttgggagtccaaatgtgatatgtataaaaggagtttatgaagattctgatgttgtttatattgtcatggaattatgtaaaggaggtgagttgtttg |
322 |
Q |
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| T |
43453234 |
ttagttgggattccaaatgtgatatcaataaaaggagcttatgaagatccggtcgttgtttatattgtaatggaattatgtgaaggaggtgagttgtttg |
43453333 |
T |
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| Q |
323 |
ataggattgtgaaaag |
338 |
Q |
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| T |
43453334 |
acaggattgtggaaag |
43453349 |
T |
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