View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_low_12 (Length: 353)
Name: NF8050_low_12
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 267; Significance: 1e-149; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 338
Target Start/End: Original strand, 31820371 - 31820704
Alignment:
| Q |
1 |
atttcaatcaatagtatagagtaggtaagaaagtgtgtgttcgagaaggtgttcttaccattattcaaagtttaaatctgtaacacagtatatagattaa |
100 |
Q |
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||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||| |
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| T |
31820371 |
atttcaaccaatagcatagagtaggtaagaaagtgtgtgttcgagaaggtgttcttaccattattcaaagtttaaatctgtaacatagcatatagattaa |
31820470 |
T |
|
| Q |
101 |
taaatttagttaatttttctttagaagaattgattaaaactctatttttacgattccgttgtgagacacactcatttcttttgacaaaaaagaggtagat |
200 |
Q |
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||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||| |
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| T |
31820471 |
taaatttagttaatttt-----agaagaatcgattaaaactctatttttacgattccgttgtgagacacactctttttttttgacaaaaaagaggtagat |
31820565 |
T |
|
| Q |
201 |
gtagtagaacttttgtgatttgtgtcggtgatgtaatgtgctcaaaattagtgtgtttagggtttaagtctgaatgagtaacttaag-ttttctttttgg |
299 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||| ||||||| |
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| T |
31820566 |
gtagtagaacttttgtgatttgtgtcggagatgtaatgtgctcaaaattagtgtgtttagggtttaagtctaaatgagtaacttaagtttttttttttgg |
31820665 |
T |
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| Q |
300 |
tctcactattgacggaaatcaacgtgaaactttgatgtc |
338 |
Q |
| |
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|||||||||||||||||||||||||||||||||| |||| |
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| T |
31820666 |
tctcactattgacggaaatcaacgtgaaactttggtgtc |
31820704 |
T |
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