View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8050_low_14 (Length: 318)
Name: NF8050_low_14
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_low_14 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 299; Significance: 1e-168; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 299; E-Value: 1e-168
Query Start/End: Original strand, 1 - 303
Target Start/End: Original strand, 31727473 - 31727775
Alignment:
| Q |
1 |
tcaacaaagaattatcagctgtttaaactctaaacatccaatgattatcttaattttgtggtgtagagtgaatctaaacataatatccaagtctattata |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31727473 |
tcaacaaagaattatcagctgtttaaactctaaacatccaatgattatcttaattttgtggtgtagagtgaatctaaacataatatccaagtctattata |
31727572 |
T |
|
| Q |
101 |
ctgtagtgtattgtgaatgtattgtgaccctaccgtaatattcaagtctatgatttgtccaatcttgtgatgtttctgcaacagttgacttcatttctcc |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31727573 |
ctgtagtctattgtgaatgtattgtgaccctaccgtaatattcaagtctatgatttgtccaatcttgtgatgtttctgcaacagttgacttcatttctcc |
31727672 |
T |
|
| Q |
201 |
tccatatgatttgggttttaacatattttgttgccctgctctatcttctaaatatttttattaggagttttcagcaaaattggtatcgaaattggtatct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31727673 |
tccatatgatttgggttttaacatattttgttgccctgctctatcttctaaatatttttattaggagttttcagcaaaattggtatcgaaattggtatct |
31727772 |
T |
|
| Q |
301 |
tct |
303 |
Q |
| |
|
||| |
|
|
| T |
31727773 |
tct |
31727775 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 18 - 96
Target Start/End: Original strand, 31720380 - 31720457
Alignment:
| Q |
18 |
gctgtttaaactctaaacatccaatgattatcttaattttgtggtgtagagtgaatctaaacataatatccaagtctat |
96 |
Q |
| |
|
||||||||||||||||| ||||||||| | ||||||||||||||||| |||| || | ||||| |||||||||||| |
|
|
| T |
31720380 |
gctgtttaaactctaaatttccaatgatatttttaattttgtggtgtagtatgaacct-atcataaaatccaagtctat |
31720457 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 18 - 95
Target Start/End: Original strand, 31714541 - 31714617
Alignment:
| Q |
18 |
gctgtttaaactctaaacatccaatgattatcttaattttgtggtgtagagtgaatctaaacataatatccaagtcta |
95 |
Q |
| |
|
||||||||||||||||| |||| |||| | ||||||||||||||||| |||| || | ||||||||||||||||| |
|
|
| T |
31714541 |
gctgtttaaactctaaatttccattgatatttttaattttgtggtgtagtatgaacct-atcataatatccaagtcta |
31714617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University