View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_low_16 (Length: 304)
Name: NF8050_low_16
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 263; Significance: 1e-147; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 263; E-Value: 1e-147
Query Start/End: Original strand, 12 - 282
Target Start/End: Complemental strand, 2018745 - 2018475
Alignment:
| Q |
12 |
agcagagatcgagttcctgaattcctttgaacgacagtctataaaggaagaggtcgaaagcatcttcttcgacgtcctcgaactcgaaggtaaaatggga |
111 |
Q |
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| T |
2018745 |
agcagagatcgagttcctgaattcctttgaacgacagtctataaaggaagaggtcgaaagcatcttcttcgacgtcctcgaactcgaaggtaaaatggga |
2018646 |
T |
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| Q |
112 |
gccacaagtgaggcgtaaggattgaatggattgtggtgatgaggtgaagaaattggaaaacctgtggaagtcggaaaagtagttgtcatcaaggtcgaag |
211 |
Q |
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| T |
2018645 |
gccacaagtgaggcgtaaggattgaatggattgtggtgatgaggtgacgaaattggaaaacctgtggaagtcggaaaagtagttgtcatcaaggtcgaag |
2018546 |
T |
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| Q |
212 |
gaacggagggagagccagagtggtttccatctctttgacagaaggctagtagcaacagcatccctcgtcgg |
282 |
Q |
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| T |
2018545 |
gaacggaaggagagccagagtggtttccatctctttgacagaaggctagtagcaacagcatccctcgtcgg |
2018475 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 206 - 282
Target Start/End: Complemental strand, 2005700 - 2005624
Alignment:
| Q |
206 |
tcgaaggaacggagggagagccagagtggtttccatctctttgacagaaggctagtagcaacagcatccctcgtcgg |
282 |
Q |
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| T |
2005700 |
tcgaaggaacggagtgagagccaaagtggtttccatctctttgacagaaggctagtagcagacgcatctctcgtcgg |
2005624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 161 - 279
Target Start/End: Complemental strand, 2011919 - 2011801
Alignment:
| Q |
161 |
aaattggaaaacctgtggaagtcggaaaagtagttgtcatcaaggtcgaaggaacggagggagagccagagtggtttccatctctttgacagaaggctag |
260 |
Q |
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| T |
2011919 |
aaatcggaaaacttgaggaagtcaggaaagtatctgtcatggaagtcaaaggaacggagcgagagccaaagtggtttccatctctttgatagaagacttg |
2011820 |
T |
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| Q |
261 |
tagcaacagcatccctcgt |
279 |
Q |
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||||| ||||||| ||||| |
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| T |
2011819 |
tagcagcagcatctctcgt |
2011801 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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