View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8050_low_17 (Length: 297)
Name: NF8050_low_17
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_low_17 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 14 - 286
Target Start/End: Complemental strand, 9299660 - 9299388
Alignment:
| Q |
14 |
aatatacgaaaatggaaatgaaatgacatgagcaaagttgtgtcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatt |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9299660 |
aatatacgaaaatggaaatgaaatgacatgagcaaagttgtgtcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatt |
9299561 |
T |
|
| Q |
114 |
tcaagcatcctaagtcaaaatttgttccataccatttcaatgagagtatgtttgattgaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagttt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||||||||| |
|
|
| T |
9299560 |
tcaagcatcctaagtcaaaatttgttccataccatttcaatgagagtatgtttgattgaatggaagatgcgggaaataaagcaacgcgatcaaacagttt |
9299461 |
T |
|
| Q |
214 |
gatgcagtatacaagatcagattcaatgattctttcgctatccgaatcagcaacataaattggacatgatgtc |
286 |
Q |
| |
|
|||||||||||||||||||||||||||||| || ||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
9299460 |
gatgcagtatacaagatcagattcaatgatactatcgctatccgaataagcaacataaattggacatgatgtc |
9299388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 60 - 239
Target Start/End: Original strand, 9258096 - 9258275
Alignment:
| Q |
60 |
ctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagag |
159 |
Q |
| |
|
|||||||||||||||||| ||||| |||| | ||| | | ||| |||||||||||||||||||||| ||||||||||||||| ||||| |||| ||||| |
|
|
| T |
9258096 |
ctgcagaggataaaataacgaatgtaatcttcttcttcgatttatgttcacatttcaagcatcctatgtcaaaatttgttcccgaccatgtcaacgagag |
9258195 |
T |
|
| Q |
160 |
tatgtttgattgaatggaagatgcgtgnnnnnnngaaacgcgatcaaacagtttgatgcagtatacaagatcagattcaa |
239 |
Q |
| |
|
||| ||||||| | |||||| | |||||| ||||||||| ||||||||||||||| | |||||||||| |
|
|
| T |
9258196 |
acggttgtattgaatagtagatgcatcaaatgaggaaacgtgatcaaacaatttgatgcagtatactaagtcagattcaa |
9258275 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 104 - 159
Target Start/End: Original strand, 9467363 - 9467418
Alignment:
| Q |
104 |
tgttcacatttcaagcatcctaagtcaaaatttgttccataccatttcaatgagag |
159 |
Q |
| |
|
|||| ||||||||||||||||| ||||||||||||||| ||||| ||||| |||| |
|
|
| T |
9467363 |
tgtttacatttcaagcatcctatgtcaaaatttgttcctgaccatgtcaataagag |
9467418 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 56 - 148
Target Start/End: Complemental strand, 9171020 - 9170928
Alignment:
| Q |
56 |
tcacctgcagaggataaaataatgaatgcaatccttttcattgctttgtgttcacatttcaagcatcctaagtcaaaatttgttccataccat |
148 |
Q |
| |
|
|||||||| |||| |||| |||||| || ||||| ||| ||| ||||| |||||||||||||||| || |||||||||||||||| ||||| |
|
|
| T |
9171020 |
tcacctgctgaggttaaagtaatgagtgttatcctcttctttgttttgttctcacatttcaagcatcttatgtcaaaatttgttccagaccat |
9170928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University