View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_low_19 (Length: 279)
Name: NF8050_low_19
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 9 - 264
Target Start/End: Original strand, 35133073 - 35133324
Alignment:
| Q |
9 |
cattattcttcaccttctcctttgattgcagcaccagaagataccaaatactttgaccaagacactgctcttttgtactcaccaagtgaaagtctcctcc |
108 |
Q |
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| T |
35133073 |
cattcttcttcaccttctcctttgattgcagcaccaggagataccaaatactttgaccaagacactgctcttttgtactcaccaagtgaaagtctcctcc |
35133172 |
T |
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| Q |
109 |
cagactttccactgttagaaatttgtttataccagttcaaattcttcatgtgggtcacggttatttcctccaaaaatcattaaaaattcaaccttaattt |
208 |
Q |
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| T |
35133173 |
cagactttccactgttagaaatttgtttataccagttcaaattcttcatgtgggtcacggttatttcctccaaaaatcattaaaaattcaacctc----t |
35133268 |
T |
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| Q |
209 |
gtaagaatttttcaaaccccaaaagcagatccaaatatacccagataggaaaaact |
264 |
Q |
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| T |
35133269 |
gtaagaatttttcaaaccccaaaagcagatccaaatatatccagataggaaaaact |
35133324 |
T |
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Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 56 - 155
Target Start/End: Original strand, 43933541 - 43933640
Alignment:
| Q |
56 |
atactttgaccaagacactgctcttttgtactcaccaagtgaaagtctcctcccagactttccactgttagaaatttgtttataccagttcaaattcttc |
155 |
Q |
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|||||||||||| ||||| ||||| ||||| ||||| ||||||||||| ||||||||| | || |||||||||||| ||| |||| | |||||||||| |
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| T |
43933541 |
atactttgaccatgacacagctctcttgtattcacctagtgaaagtcttctcccagacctcacattgttagaaatttcttttaaccaatgcaaattcttc |
43933640 |
T |
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