View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_low_23 (Length: 252)
Name: NF8050_low_23
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_low_23 |
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Alignment Details
Target: chr3 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 13 - 237
Target Start/End: Original strand, 48383587 - 48383811
Alignment:
| Q |
13 |
gagaaggacagagctttggagtttaaggctttggaggtattgtatgcttgtgatggtgacattttgtggcatgttagttaccaaatggttcatgcacatt |
112 |
Q |
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| T |
48383587 |
gagaaggacagagctttggagtttaaggctttggaggtattgtatgcttgtgatggtgacattttgtggcatgttagttaccaaatggttcatgcacatt |
48383686 |
T |
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| Q |
113 |
cttgttttcttgattgaaatgaactttttgttgaagaaaaaagtactttattttgtccatggattgaagaaatgtgtccaggttttcatttggatcagtt |
212 |
Q |
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| T |
48383687 |
cttgttttcttgattgaaatgaactttttgttgaagaaaaaagtactttattttgttcatggattgaagaaatgtgtccaggttttcatttggatcagtt |
48383786 |
T |
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| Q |
213 |
tggttctcctcacatgggtgctttt |
237 |
Q |
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| T |
48383787 |
tggttctcctcacatgggtgctttt |
48383811 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 164; E-Value: 9e-88
Query Start/End: Original strand, 27 - 238
Target Start/End: Original strand, 48363988 - 48364199
Alignment:
| Q |
27 |
tttggagtttaaggctttggaggtattgtatgcttgtgatggtgacattttgtggcatgttagttaccaaatggttcatgcacattcttgttttcttgat |
126 |
Q |
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| T |
48363988 |
tttggagtttagggctttggaggtggtgtatgcttgtgatggtgacattttttggcttgttagttaccaaatggttcatgcacattgttgttttcttgat |
48364087 |
T |
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| Q |
127 |
tgaaatgaactttttgttgaagaaaaaagtactttattttgtccatggattgaagaaatgtgtccaggttttcatttggatcagtttggttctcctcaca |
226 |
Q |
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| T |
48364088 |
tgaaatgaactttttgttgaagaaaaaggtgctttattttgtccatgggttgaagcaatgtgtccaggttttcatttggatcagtttggttctccttaca |
48364187 |
T |
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| Q |
227 |
tgggtgcttttt |
238 |
Q |
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| T |
48364188 |
tgggtacttttt |
48364199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 16 - 237
Target Start/End: Complemental strand, 48398551 - 48398330
Alignment:
| Q |
16 |
aaggacagagctttggagtttaaggctttggaggtattgtatgcttgtgatggtgacattttgtggcatgttagttaccaaatggttcatgcacattctt |
115 |
Q |
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| T |
48398551 |
aaggacggagatttggagtttggggctttggaggtggtgtatgcttgtgatggtgacattttgtggcatgttagttaccaaatggttcacgcacattgtg |
48398452 |
T |
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| Q |
116 |
gttttcttgattgaaatgaactttttgttgaagaaaaaagtactttattttgtccatggattgaagaaatgtgtccaggttttcatttggatcagtttgg |
215 |
Q |
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| T |
48398451 |
gttttcttgattgaaatgaactttttattgaagaaaaaggtgctttattttgttcatggactgaagaaatgtatccaggttttcacttggattgctttgg |
48398352 |
T |
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| Q |
216 |
ttctcctcacatgggtgctttt |
237 |
Q |
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|||||||||| ||||||||||| |
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| T |
48398351 |
ttctcctcacttgggtgctttt |
48398330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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