View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_low_27 (Length: 243)
Name: NF8050_low_27
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_low_27 |
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Alignment Details
Target: chr2 (Bit Score: 214; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 23466315 - 23466540
Alignment:
| Q |
1 |
ctctagccatactaggcctcaaccttggcttctcttgcacacaccataaagctacataaaccaatttaatcacctccctctcatcaacaccaccacattc |
100 |
Q |
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| T |
23466315 |
ctctagccatactaggcctcaaccttggcttctcttgcacacaccataaagcaacataaaccaatttaatcacctccctctcatcaacaccaccacattc |
23466414 |
T |
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| Q |
101 |
cattaacctatgatcaacaatttccatgattttcccttgtttcactttctcgtttacaatcttcggaaaatattgccatttcctttttgacttgtccgtt |
200 |
Q |
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| T |
23466415 |
cattaacctatgatcaacaatttccatgattttcccttgtttcactttctcgtttacaatcttcggaaaatattgccatttcctttttgacttgtccttt |
23466514 |
T |
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| Q |
201 |
tcgtcttcaaccaagcacacattttt |
226 |
Q |
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| T |
23466515 |
tcgtcttcaaccaaacacacattttt |
23466540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 49 - 220
Target Start/End: Original strand, 38820017 - 38820187
Alignment:
| Q |
49 |
aagctacataaaccaatttaatcacctccctctcatcaacaccaccacattccattaacctatgatcaacaatttccatgattttcccttgtttcacttt |
148 |
Q |
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| T |
38820017 |
aagcaacataaaccaatttaatcacctccctatcagcaacacctccacattttgttaacttatgatcaacaacttccatg-ttttcccttgtttcacttt |
38820115 |
T |
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| Q |
149 |
ctcgtttacaatcttcggaaaatattgccatttcctttttgacttgtccgtttcgtcttcaaccaagcacac |
220 |
Q |
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| T |
38820116 |
ctcattaacaatcttaggaaaatactgccatttccattttatgttgtccttttcatcttcagccaaacacac |
38820187 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 38821305 - 38821381
Alignment:
| Q |
66 |
ttaatcacctccctctcatcaacaccaccacattccattaacctatgatcaacaatttccatgattttcccttgttt |
142 |
Q |
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|||||||||||||||||| ||||||| | ||||||||||| ||||| || ||||||| ||||||||||||||||| |
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| T |
38821305 |
ttaatcacctccctctcaacaacacccaaatattccattaacttatgaacagcaatttcgatgattttcccttgttt |
38821381 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 7 - 178
Target Start/End: Complemental strand, 46790083 - 46789912
Alignment:
| Q |
7 |
ccatactaggcctcaaccttggcttctcttgcacacaccataaagctacataaaccaatttaatcacctccctctcatcaacaccaccacattccattaa |
106 |
Q |
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| T |
46790083 |
ccatactaggcctcaaccttggcttctcttgtatacaccacaaagcaataaacaccaaccttttcacctcattctcatcaacacctccaaaatcaactac |
46789984 |
T |
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| Q |
107 |
cctatgatcaacaatttccatgattttcccttgtttcactttctcgtttacaatcttcggaaaatattgcca |
178 |
Q |
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| T |
46789983 |
cctttgatccacaatttccatcaatttcccttctcttaatttctcattcacaattttaggaaaaaattgcca |
46789912 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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