View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_low_29 (Length: 229)
Name: NF8050_low_29
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_low_29 |
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Alignment Details
Target: chr1 (Bit Score: 180; Significance: 2e-97; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 18 - 213
Target Start/End: Original strand, 14596794 - 14596989
Alignment:
| Q |
18 |
cttactggcgaggaatgcattgttcttggagaagaaaatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggt |
117 |
Q |
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| T |
14596794 |
cttactagcgaggaatgcattgttcttggagaagaaaatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggt |
14596893 |
T |
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| Q |
118 |
gctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcact |
213 |
Q |
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| T |
14596894 |
gcagatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacatcctctgtcact |
14596989 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 164; E-Value: 8e-88
Query Start/End: Original strand, 18 - 213
Target Start/End: Complemental strand, 14611776 - 14611581
Alignment:
| Q |
18 |
cttactggcgaggaatgcattgttcttggagaagaaaatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggt |
117 |
Q |
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| T |
14611776 |
cttactggcgaggaatgcattgttcttggagaagaaaatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaaggttaattggt |
14611677 |
T |
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| Q |
118 |
gctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcact |
213 |
Q |
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| T |
14611676 |
gctgatccgcgaaatgcatctcgcttggtcacgcaatatacagaacgccatccacggttgtgcatgcggtaacctgtaacgacgtcctctgtcact |
14611581 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 37 - 213
Target Start/End: Original strand, 15417030 - 15417206
Alignment:
| Q |
37 |
ttgttcttggagaagaaaatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcat |
136 |
Q |
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| T |
15417030 |
ttgttttttgagaagaaaatttctactgaacctgttgcccatcttagaacttggtgtaaacgatcggtgagatttataggtgctgttccacggaaagcgt |
15417129 |
T |
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| Q |
137 |
ctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcact |
213 |
Q |
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| T |
15417130 |
ctctttttgtgatgcaatatatcgatctccatccacggttgtgcattctgtaaccagttacaacatcttctgtcact |
15417206 |
T |
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