View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_low_30 (Length: 223)
Name: NF8050_low_30
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_low_30 |
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Alignment Details
Target: chr2 (Bit Score: 161; Significance: 5e-86; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 20 - 212
Target Start/End: Original strand, 22831718 - 22831910
Alignment:
| Q |
20 |
ctatctgtcttgtttcttcacgctgccaaacctttgtctcatttcttgttagtgcactaaatttctctaatatacgataatgaggtgaagtacaattttt |
119 |
Q |
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| T |
22831718 |
ctatctgtcttgtttcttcacgctgccaaacctttgtctcatttcttgttagtgcactaaatttctctaatatacgataatgaggtgaagtacacttttt |
22831817 |
T |
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| Q |
120 |
ctataagattcttttannnnnnnncatcatatcttcctaatagttcttttgcatgcagtgtgtatggatcttatcttccacttccacaggttc |
212 |
Q |
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| T |
22831818 |
ctataagattcttttattttttttcatcatatcttcctaatagttcttttgcatgcagtgtgtatggatcttatcttccacttccacatgttc |
22831910 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 60 - 135
Target Start/End: Original strand, 22983923 - 22984000
Alignment:
| Q |
60 |
atttcttgttagtgcactaaatttctctaatatacgataatgagg--tgaagtacaatttttctataagattctttta |
135 |
Q |
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| T |
22983923 |
atttcgtgttagtgcactaaatttctctaatatacgataacgaggtttgaagtactctttttcttgaaggttctttta |
22984000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 22823063 - 22823104
Alignment:
| Q |
171 |
catgcagtgtgtatggatcttatcttccacttccacaggttc |
212 |
Q |
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| T |
22823063 |
catgcagtgtgtatggatcttatcttccacttccacatgttc |
22823104 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 11544290 - 11544256
Alignment:
| Q |
178 |
tgtgtatggatcttatcttccacttccacaggttc |
212 |
Q |
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| T |
11544290 |
tgtgtatggatcttatcttccacttccacatgttc |
11544256 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 178 - 212
Target Start/End: Complemental strand, 11557711 - 11557677
Alignment:
| Q |
178 |
tgtgtatggatcttatcttccacttccacaggttc |
212 |
Q |
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|||||||||||||||||||||||||||||| |||| |
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| T |
11557711 |
tgtgtatggatcttatcttccacttccacatgttc |
11557677 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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