View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8050_low_4 (Length: 445)
Name: NF8050_low_4
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8050_low_4 |
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Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-131; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-131
Query Start/End: Original strand, 18 - 271
Target Start/End: Original strand, 14596794 - 14597047
Alignment:
| Q |
18 |
cttactggcgaggaatgcattgttcttggagaagaaaatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggt |
117 |
Q |
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| T |
14596794 |
cttactagcgaggaatgcattgttcttggagaagaaaatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggt |
14596893 |
T |
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| Q |
118 |
gctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacc |
217 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||| |
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| T |
14596894 |
gcagatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacatcctctgtcactgacc |
14596993 |
T |
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| Q |
218 |
cataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
271 |
Q |
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| T |
14596994 |
cataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
14597047 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 18 - 271
Target Start/End: Complemental strand, 14611776 - 14611523
Alignment:
| Q |
18 |
cttactggcgaggaatgcattgttcttggagaagaaaatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggt |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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| T |
14611776 |
cttactggcgaggaatgcattgttcttggagaagaaaatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaaggttaattggt |
14611677 |
T |
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| Q |
118 |
gctgatccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacc |
217 |
Q |
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| T |
14611676 |
gctgatccgcgaaatgcatctcgcttggtcacgcaatatacagaacgccatccacggttgtgcatgcggtaacctgtaacgacgtcctctgtcactgatc |
14611577 |
T |
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| Q |
218 |
cataaatccatcccactctttctccccattctgtcttgtcttcatacctacatg |
271 |
Q |
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| T |
14611576 |
cataaatccatcccactctgtctccccattctgtcttctcttcgtacctacatg |
14611523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 111; E-Value: 7e-56
Query Start/End: Original strand, 322 - 436
Target Start/End: Original strand, 14597098 - 14597212
Alignment:
| Q |
322 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
421 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14597098 |
gttgtcttttcatatataatattgtatataagtacaaaaatattttttatgacttatatgtttgtgtttgacaaagtatacataccaacaagaaatgaca |
14597197 |
T |
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| Q |
422 |
gacacaggttctgct |
436 |
Q |
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| T |
14597198 |
gacacagattctgct |
14597212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 7e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 37 - 266
Target Start/End: Original strand, 15417030 - 15417259
Alignment:
| Q |
37 |
ttgttcttggagaagaaaatctcaacagaacctgtggcccatcttagcacctggtgtagtcgatcagtaagattaattggtgctgatccacgaaatgcat |
136 |
Q |
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||||| || ||||||||||| || || |||||||| ||||||||||| || ||||||| ||||| || ||||| || ||||||| |||||| || || | |
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| T |
15417030 |
ttgttttttgagaagaaaatttctactgaacctgttgcccatcttagaacttggtgtaaacgatcggtgagatttataggtgctgttccacggaaagcgt |
15417129 |
T |
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| Q |
137 |
ctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaatccatcccactct |
236 |
Q |
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| T |
15417130 |
ctctttttgtgatgcaatatatcgatctccatccacggttgtgcattctgtaaccagttacaacatcttctgtcactgatccataaatccaacctattct |
15417229 |
T |
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| Q |
237 |
ttctccccattctgtcttgtcttcatacct |
266 |
Q |
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|||||||||||||| || || |||||||| |
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| T |
15417230 |
atctccccattctgttttatcctcatacct |
15417259 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 124 - 265
Target Start/End: Original strand, 12192718 - 12192859
Alignment:
| Q |
124 |
ccacgaaatgcatctcgcttggttacacaatatacagaacgccatccacgattgtgcatgcggtaccctgtaaccacgtcttctgtcactgacccataaa |
223 |
Q |
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||||| || ||||| | |||||| |||||||| ||||| | |||||| | ||||||||| | || ||||| || || || || || || ||||| |||| |
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| T |
12192718 |
ccacggaaggcatccctcttggtcacacaatacacagacctccatcctctattgtgcattctataacctgtcacaacatcctcggttaccgacccgtaaa |
12192817 |
T |
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| Q |
224 |
tccatcccactctttctccccattctgtcttgtcttcatacc |
265 |
Q |
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| T |
12192818 |
tccatccaactctatctccccattcggtcttatcttcatacc |
12192859 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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