View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8050_low_7 (Length: 424)

Name: NF8050_low_7
Description: NF8050
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8050_low_7
NF8050_low_7
[»] chr4 (2 HSPs)
chr4 (97-406)||(24301011-24301319)
chr4 (29-67)||(37315560-37315598)
[»] chr2 (6 HSPs)
chr2 (119-243)||(42037540-42037672)
chr2 (29-70)||(12989338-12989379)
chr2 (29-67)||(37228495-37228533)
chr2 (29-61)||(4964818-4964850)
chr2 (33-61)||(37719837-37719865)
chr2 (29-61)||(42182892-42182924)
[»] chr1 (5 HSPs)
chr1 (29-68)||(41095754-41095793)
chr1 (29-66)||(27570372-27570409)
chr1 (29-61)||(11135742-11135774)
chr1 (29-61)||(11430588-11430620)
chr1 (29-61)||(41095609-41095641)
[»] chr7 (4 HSPs)
chr7 (29-67)||(13919777-13919815)
chr7 (29-61)||(13919928-13919960)
chr7 (29-61)||(22786154-22786186)
chr7 (29-61)||(27888429-27888461)
[»] chr6 (2 HSPs)
chr6 (29-67)||(35128868-35128906)
chr6 (29-61)||(19090215-19090247)
[»] chr5 (6 HSPs)
chr5 (29-67)||(28611773-28611811)
chr5 (29-67)||(34818334-34818372)
chr5 (28-61)||(34368506-34368539)
chr5 (29-61)||(4959281-4959313)
chr5 (31-63)||(32653076-32653108)
chr5 (29-61)||(42224736-42224768)
[»] chr3 (5 HSPs)
chr3 (29-67)||(46237191-46237229)
chr3 (29-66)||(24748905-24748942)
chr3 (29-61)||(10769870-10769902)
chr3 (29-61)||(29775142-29775174)
chr3 (29-61)||(37600130-37600162)
[»] chr8 (1 HSPs)
chr8 (31-67)||(43026290-43026326)


Alignment Details
Target: chr4 (Bit Score: 286; Significance: 1e-160; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 97 - 406
Target Start/End: Complemental strand, 24301319 - 24301011
Alignment:
Q  97 agattgtgctatgctaagcttcgcaattaaccaacaggatcaaatggtagcaaacaataggtagtaaatattctaccaagtttatggtgatactatttta 196  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  24301319 agattgtgctatgctaagcttcgcaattaaccaacaggatcaaatggtagcaaacaatagatagtaaatattctaccaagtttatggtgatactatttta 24301220  T
Q  197 aatacttggccttgttaaattacaaatagcagcatggactattttaaaaatgaaaactaatgcacaactaacagttggcaaatgaagtttaaaagtataa 296  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  24301219 aatacttggccttgttaaattacaaatagcagcatggactattttaaaaatgaaaactagtgcacaactaacagttggcaaatgaagtttaaaagtataa 24301120  T
Q  297 attgattctactaaacttctatcataatattaagctctgggaatggttaaaactttgtccaacactcaacatagatttctttgagttcttttcccttcca 396  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||    
T  24301119 attgattcaactaaacttctatcataatattaagctctgggaatggttaaaactttgtccaacactcaacatagacttctttgagttc-tttcccttcca 24301021  T
Q  397 aaactcaact 406  Q
    ||||||||||    
T  24301020 aaactcaact 24301011  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 37315598 - 37315560
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagcacttctc 67  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  37315598 agagagagtgctcaaaagagagtgttgctagcatttctc 37315560  T

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Target: chr2 (Bit Score: 52; Significance: 1e-20; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 119 - 243
Target Start/End: Original strand, 42037540 - 42037672
Alignment:
Q  119 gcaattaaccaacaggatcaaatggtagcaaacaataggt----agtaaatattctaccaagtttatggtgatactattttaaatacttg--gccttgtt 212  Q
    ||||||| ||||||||||||||| ||||||||||||||||    ||| ||||||||| || ||||||||||||||||||||||| |||||  || |||||    
T  42037540 gcaattagccaacaggatcaaatagtagcaaacaataggtagtgagtcaatattcta-caggtttatggtgatactattttaaaaacttgttgcgttgtt 42037638  T
Q  213 aaattacaaa---tagcagcatggactattttaa 243  Q
    |||||||| |   |||||||| ||||||||||||    
T  42037639 aaattacagattgtagcagcagggactattttaa 42037672  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 29 - 70
Target Start/End: Original strand, 12989338 - 12989379
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagcacttctccta 70  Q
    |||||||||| |||||||||| ||||||||||||||||||||    
T  12989338 agagagagtgttcaaaagagagtgttgctagcacttctccta 12989379  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 37228533 - 37228495
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagcacttctc 67  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  37228533 agagagagtgctcaaaagagagtgttgctagcatttctc 37228495  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 4964818 - 4964850
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||| |||||||||||||||||||||||    
T  4964818 agagagagtactcaaaagagaatgttgctagca 4964850  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 33 - 61
Target Start/End: Complemental strand, 37719865 - 37719837
Alignment:
Q  33 agagtgctcaaaagagaatgttgctagca 61  Q
    |||||||||||||||||||||||||||||    
T  37719865 agagtgctcaaaagagaatgttgctagca 37719837  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 42182924 - 42182892
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  42182924 agagagagtgctcaaaagagagtgttgctagca 42182892  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 41095754 - 41095793
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagcacttctcc 68  Q
    ||||||||||||||||||||| ||||||||||| ||||||    
T  41095754 agagagagtgctcaaaagagagtgttgctagcatttctcc 41095793  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Original strand, 27570372 - 27570409
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagcacttct 66  Q
    |||||||||| |||||||||||||||||||||| ||||    
T  27570372 agagagagtgttcaaaagagaatgttgctagcatttct 27570409  T

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Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 11135774 - 11135742
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  11135774 agagagagtgctcaaaagagagtgttgctagca 11135742  T

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Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 11430588 - 11430620
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  11430588 agagagagtgctcaaaagagagtgttgctagca 11430620  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 41095641 - 41095609
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  41095641 agagagagtgctcaaaagagagtgttgctagca 41095609  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 13919815 - 13919777
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagcacttctc 67  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  13919815 agagagagtgctcaaaagagagtgttgctagcatttctc 13919777  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 13919928 - 13919960
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  13919928 agagagagtgctcaaaagagagtgttgctagca 13919960  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 22786186 - 22786154
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  22786186 agagagagtgctcaaaagagagtgttgctagca 22786154  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 27888429 - 27888461
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  27888429 agagagagtgctcaaaagagagtgttgctagca 27888461  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 35128868 - 35128906
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagcacttctc 67  Q
    |||||||||| |||||||||| |||||||||||||||||    
T  35128868 agagagagtgttcaaaagagagtgttgctagcacttctc 35128906  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 19090247 - 19090215
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  19090247 agagagagtgctcaaaagagagtgttgctagca 19090215  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Complemental strand, 28611811 - 28611773
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagcacttctc 67  Q
    ||||||||||||||||||||| ||||||||||| |||||    
T  28611811 agagagagtgctcaaaagagagtgttgctagcatttctc 28611773  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 34818334 - 34818372
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagcacttctc 67  Q
    |||||||||||||||||||||||||| |||||| |||||    
T  34818334 agagagagtgctcaaaagagaatgttcctagcatttctc 34818372  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 61
Target Start/End: Original strand, 34368506 - 34368539
Alignment:
Q  28 cagagagagtgctcaaaagagaatgttgctagca 61  Q
    |||||||||||||||||||||| |||||||||||    
T  34368506 cagagagagtgctcaaaagagagtgttgctagca 34368539  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 4959313 - 4959281
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  4959313 agagagagtgctcaaaagagagtgttgctagca 4959281  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 63
Target Start/End: Original strand, 32653076 - 32653108
Alignment:
Q  31 agagagtgctcaaaagagaatgttgctagcact 63  Q
    |||||||| ||||||||||||||||||||||||    
T  32653076 agagagtgttcaaaagagaatgttgctagcact 32653108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 42224736 - 42224768
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  42224736 agagagagtgctcaaaagagagtgttgctagca 42224768  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 67
Target Start/End: Original strand, 46237191 - 46237229
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagcacttctc 67  Q
    ||||||||||||||||||||| |||||||| ||||||||    
T  46237191 agagagagtgctcaaaagagagtgttgctaacacttctc 46237229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 29 - 66
Target Start/End: Complemental strand, 24748942 - 24748905
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagcacttct 66  Q
    ||||||||||||||||||||| |||||||| |||||||    
T  24748942 agagagagtgctcaaaagagagtgttgctatcacttct 24748905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 10769870 - 10769902
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  10769870 agagagagtgctcaaaagagagtgttgctagca 10769902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 29775174 - 29775142
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  29775174 agagagagtgctcaaaagagagtgttgctagca 29775142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 29 - 61
Target Start/End: Complemental strand, 37600162 - 37600130
Alignment:
Q  29 agagagagtgctcaaaagagaatgttgctagca 61  Q
    ||||||||||||||||||||| |||||||||||    
T  37600162 agagagagtgctcaaaagagagtgttgctagca 37600130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 31 - 67
Target Start/End: Complemental strand, 43026326 - 43026290
Alignment:
Q  31 agagagtgctcaaaagagaatgttgctagcacttctc 67  Q
    |||||||| | ||||||||||||||||||||||||||    
T  43026326 agagagtgtttaaaagagaatgttgctagcacttctc 43026290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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