View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8051_low_2 (Length: 469)
Name: NF8051_low_2
Description: NF8051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8051_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 18 - 465
Target Start/End: Complemental strand, 40131248 - 40130800
Alignment:
| Q |
18 |
atttatgatgcatattcatacacatatgtggcttgtcaggttgtcacattggtctaaatgtgatttatcaacaaaaggnnnnnnncaaacacattgttgg |
117 |
Q |
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| T |
40131248 |
atttataatgcatatccatacacatatgtggcttgtcaggttgtcacattggtctaaatgtgatttatcaacaaaaggaaaaaaaaaaacacattgttgg |
40131149 |
T |
|
| Q |
118 |
tctaaatgggaatgattattgaactcaattattaaaaataaaaataaggtttggaattttgtgtaatttggtcaaacatacaatcagtccgatcaataaa |
217 |
Q |
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| T |
40131148 |
tctaaatgggaatgattattgaactcaattattaaaaataaaaataaggtttggaattttgtgtaatttggtcaaacatacaatcagtccgatcaataaa |
40131049 |
T |
|
| Q |
218 |
gaaatgcaaaacattgactttgaaaaagatgtgctgtctatgtcttcattcttttaagggtaaaatttaaattattagtatgtttctccttgtcatgatt |
317 |
Q |
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| T |
40131048 |
gaaatgcaaaacattgactttgaaaaagatgtgctgtctatgtcttcattcttttaagggtaaaatttaaattattagtatgtttctccttgtcatgatt |
40130949 |
T |
|
| Q |
318 |
tttctgttaaactttcannnnnnnnactttaaactatttatcta-ttacttatttgttggatgattattttgcaataatcatgtcaaccatcatataaat |
416 |
Q |
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||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40130948 |
tttctgttaaactttcattttttttactttaaactatttatctatttacttatttgttggatgattattttgcaataatcatgtcaaccatcatataaat |
40130849 |
T |
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| Q |
417 |
tctaattttctgctttatttaatctcacatgttcaacagattcttgaag |
465 |
Q |
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| T |
40130848 |
tctaattttctgctttatttaatctcacatgttcaacagattcttgaag |
40130800 |
T |
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