View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8051_low_5 (Length: 262)
Name: NF8051_low_5
Description: NF8051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8051_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 136; Significance: 5e-71; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 136; E-Value: 5e-71
Query Start/End: Original strand, 31 - 259
Target Start/End: Complemental strand, 1173612 - 1173376
Alignment:
| Q |
31 |
cattttacaatacctatacatcattaatannnnnnnna---tcataccctttactatttattattctatcttcttttaattcttttaagaaaaatgctaa |
127 |
Q |
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| T |
1173612 |
cattttacaatacctatacatcattaatattttttttactatcataccctttactatttattattctatcttcttttaatt-ttttaagaaaaatactat |
1173514 |
T |
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| Q |
128 |
atacaacgtattgattctcgcaagtacatactgaaagagtattccactgggcatttttt-gatttccatc-----atagaccttccattgaattccgctc |
221 |
Q |
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| T |
1173513 |
atacaacaaattgattcttgcgagtacataccgaaagagtattccactgggcatttttttgatttccatctattcatagaccttccattgaattccgctc |
1173414 |
T |
|
| Q |
222 |
aatcttcatttataattgattgctttattttttgggat |
259 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
1173413 |
aatcttcatttataattgattgctttattttttgggat |
1173376 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 209 - 259
Target Start/End: Complemental strand, 1167927 - 1167874
Alignment:
| Q |
209 |
ttgaattccgctcaatcttcatttata---attgattgctttattttttgggat |
259 |
Q |
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||||||||||||||||||||||||||| ||||||||| |||||||| ||||| |
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| T |
1167927 |
ttgaattccgctcaatcttcatttataattattgattgcgttatttttcgggat |
1167874 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 77 - 115
Target Start/End: Original strand, 21554382 - 21554420
Alignment:
| Q |
77 |
tttactatttattattctatcttcttttaattcttttaa |
115 |
Q |
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| T |
21554382 |
tttactatttattattttatctttttttaattcttttaa |
21554420 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 209 - 238
Target Start/End: Complemental strand, 1170412 - 1170383
Alignment:
| Q |
209 |
ttgaattccgctcaatcttcatttataatt |
238 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
1170412 |
ttgaattccgctcaatcttcatttataatt |
1170383 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 29086635 - 29086588
Alignment:
| Q |
68 |
atcataccctttactatttattattctatcttcttttaattcttttaa |
115 |
Q |
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|||||||||||||||||||||| |||| |||||||| ||||||||||| |
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| T |
29086635 |
atcataccctttactatttattgttctctcttctttcaattcttttaa |
29086588 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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