View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8051_low_6 (Length: 257)

Name: NF8051_low_6
Description: NF8051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8051_low_6
NF8051_low_6
[»] chr6 (16 HSPs)
chr6 (19-257)||(13035404-13035643)
chr6 (19-257)||(6472706-6472944)
chr6 (127-257)||(6515872-6516002)
chr6 (127-241)||(6505776-6505890)
chr6 (120-245)||(6465622-6465747)
chr6 (113-213)||(6520324-6520424)
chr6 (113-257)||(1841646-1841790)
chr6 (168-245)||(1822092-1822169)
chr6 (120-199)||(6497008-6497087)
chr6 (120-198)||(6461585-6461663)
chr6 (127-257)||(1838789-1838918)
chr6 (113-210)||(6528523-6528620)
chr6 (174-227)||(6526679-6526732)
chr6 (127-238)||(6457672-6457783)
chr6 (19-75)||(6515764-6515820)
chr6 (43-84)||(6528652-6528693)
[»] chr1 (1 HSPs)
chr1 (120-212)||(35231203-35231298)
[»] chr7 (2 HSPs)
chr7 (120-227)||(4046539-4046646)
chr7 (126-158)||(9665070-9665102)
[»] chr4 (1 HSPs)
chr4 (126-158)||(13536094-13536126)


Alignment Details
Target: chr6 (Bit Score: 228; Significance: 1e-126; HSPs: 16)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 228; E-Value: 1e-126
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 13035404 - 13035643
Alignment:
Q  19 tataagtttaataagaaaggttcaggtgatttactgatgttagcacaccctcttcatctccagcttatctcaaaaagtgattccaatgctacatttt-tt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  13035404 tataagtttaataagaaaggttcaggtgatttactgatgttagcacaccctcttcatctccagcttatctcaaaaagtgattccaatgctacattttttt 13035503  T
Q  118 agtgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgtttctgtaacttggcatacaa 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  13035504 agtgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgattctgtttctgtaacttggcatacaa 13035603  T
Q  218 gcaaaggtgtaaaagaagaatcacatgacaaaattgtttc 257  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  13035604 gcaaaggtgtaaaagaagaatcacatgacaaaattgtttc 13035643  T

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Target: chr6; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 19 - 257
Target Start/End: Original strand, 6472706 - 6472944
Alignment:
Q  19 tataagtttaataagaaaggttcaggtgatttactgatgttagcacaccctcttcatctccagcttatctcaaaaagtgattccaatgctacatttttta 118  Q
    ||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||| ||||| |    
T  6472706 tataagtttgagaagaaaggttcaggtgatttactgatgttagcacaccctcttcatctccagcttatgtctaaaagtgattccaatgctacctttttga 6472805  T
Q  119 gtgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgtttctgtaacttggcatacaag 218  Q
    | |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||||||| ||||    
T  6472806 gggattttaagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaacagatcctgtttctattacttggcattcaag 6472905  T
Q  219 caaaggtgtaaaagaagaatcacatgacaaaattgtttc 257  Q
    |||||||||||||||||||||||||||| ||||||||||    
T  6472906 caaaggtgtaaaagaagaatcacatgacgaaattgtttc 6472944  T

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Target: chr6; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 6515872 - 6516002
Alignment:
Q  127 aagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgtttctgtaacttggcatacaagcaaaggtg 226  Q
    |||||| ||||||||||||| || |||||||| |||||||||||||||||| ||||||||||||||||  ||||||||||||||||| |||||||||||     
T  6515872 aagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggattttgaaaaccgatccgatttctgtaacttggcattcaagcaaaggta 6515971  T
Q  227 taaaagaagaatcacatgacaaaattgtttc 257  Q
    |||||||||||||||||||  ||||||||||    
T  6515972 taaaagaagaatcacatgatgaaattgtttc 6516002  T

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Target: chr6; HSP #4
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 127 - 241
Target Start/End: Complemental strand, 6505890 - 6505776
Alignment:
Q  127 aagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgtttctgtaacttggcatacaagcaaaggtg 226  Q
    ||||||| ||||||||||||||| |||||||| |||||||||||||||||| |||||||||| || ||||||||  | ||||||||  ||||||||||||    
T  6505890 aagtatacaagcattgatggtgaccttgttggtgttgttggtgattcatggattttgaaaacagaacctgtttccatgacttggcactcaagcaaaggtg 6505791  T
Q  227 taaaagaagaatcac 241  Q
    ||||||| |||||||    
T  6505790 taaaagacgaatcac 6505776  T

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Target: chr6; HSP #5
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 120 - 245
Target Start/End: Complemental strand, 6465747 - 6465622
Alignment:
Q  120 tgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgtttctgtaacttggcatacaagc 219  Q
    ||||| |||||||| ||| ||||||||||| |||||||| |||||||||||||||||| | |||||||||||||| |||||||||||||||||| | |      
T  6465747 tgattttaagtatagaagtattgatggtgatcttgttggtgttgttggtgattcatggttgttgaaaaccgatccggtttctgtaacttggcattctact 6465648  T
Q  220 aaaggtgtaaaagaagaatcacatga 245  Q
    || ||||| ||||||||||| |||||    
T  6465647 aagggtgttaaagaagaatctcatga 6465622  T

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Target: chr6; HSP #6
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 113 - 213
Target Start/End: Original strand, 6520324 - 6520424
Alignment:
Q  113 tttttagtgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgtttctgtaacttggca 212  Q
    |||| ||||||| ||||||||||||||||||||| || |||||||| ||  |||||||||||||| |||||||||| |||||||||||||||||||||||    
T  6520324 ttttgagtgattttaagtataaaagcattgatggagaccttgttggtgtcattggtgattcatggtttttgaaaactgatcctgtttctgtaacttggca 6520423  T
Q  213 t 213  Q
    |    
T  6520424 t 6520424  T

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Target: chr6; HSP #7
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 113 - 257
Target Start/End: Original strand, 1841646 - 1841790
Alignment:
Q  113 tttttagtgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgtttctgtaacttggca 212  Q
    |||| ||| ||| |||||||||||||||| |||  || |||||    |||||||||||||||||| ||||||||||||||| || |||  ||||||||||    
T  1841646 ttttgagttattttaagtataaaagcatttatgcagagcttgtcaatgttgttggtgattcatggattttgaaaaccgatcatgcttccataacttggca 1841745  T
Q  213 tacaagcaaaggtgtaaaagaagaatcacatgacaaaattgtttc 257  Q
    | ||||||||||||||||||||||||  |||||  ||||||||||    
T  1841746 ttcaagcaaaggtgtaaaagaagaatttcatgatgaaattgtttc 1841790  T

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Target: chr6; HSP #8
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 168 - 245
Target Start/End: Original strand, 1822092 - 1822169
Alignment:
Q  168 tgattcatggcttttgaaaaccgatcctgtttctgtaacttggcatacaagcaaaggtgtaaaagaagaatcacatga 245  Q
    |||||||||||||||||||| |||||||||||| |||||||||||| ||||||||||||| ||| ||||||| |||||    
T  1822092 tgattcatggcttttgaaaatcgatcctgtttccgtaacttggcattcaagcaaaggtgttaaacaagaatctcatga 1822169  T

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Target: chr6; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 120 - 199
Target Start/End: Complemental strand, 6497087 - 6497008
Alignment:
Q  120 tgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgttt 199  Q
    ||||| ||||||| ||||||||||||| || |||||||| |||||||||||||||||||||||| |||| ||||||||||    
T  6497087 tgattttaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggcttttggaaactgatcctgttt 6497008  T

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Target: chr6; HSP #10
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 120 - 198
Target Start/End: Original strand, 6461585 - 6461663
Alignment:
Q  120 tgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgtt 198  Q
    ||||| ||||||| ||||||||||||| || |||||||| |||||||||||||||||||||||| |||| |||||||||    
T  6461585 tgattttaagtatcaaagcattgatggagaccttgttggtgttgttggtgattcatggcttttggaaactgatcctgtt 6461663  T

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Target: chr6; HSP #11
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 257
Target Start/End: Original strand, 1838789 - 1838918
Alignment:
Q  127 aagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgtttctgtaacttggcatacaagcaaaggtg 226  Q
    |||||||||||| ||||| | || | ||| || | ||||||| |||||||| ||||||||||||||| |||||||||| |||||||| |||| ||  |||    
T  1838789 aagtataaaagctttgatcgagagcctgtcggtgctgttggt-attcatggattttgaaaaccgatcatgtttctgtatcttggcattcaagaaattgtg 1838887  T
Q  227 taaaagaagaatcacatgacaaaattgtttc 257  Q
    |||| ||||||||  ||||  ||||||||||    
T  1838888 taaatgaagaatctaatgatgaaattgtttc 1838918  T

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Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 113 - 210
Target Start/End: Complemental strand, 6528620 - 6528523
Alignment:
Q  113 tttttagtgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgtttctgtaacttgg 210  Q
    |||| |||||||  |||||||||||||||||||| || ||||||||  |||||| |||||| ||| |||||||||| |||| ||||||| | ||||||    
T  6528620 ttttgagtgatttcaagtataaaagcattgatggcgatcttgttggcattgttgctgattcgtggattttgaaaactgatcatgtttctattacttgg 6528523  T

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Target: chr6; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 174 - 227
Target Start/End: Complemental strand, 6526732 - 6526679
Alignment:
Q  174 atggcttttgaaaaccgatcctgtttctgtaacttggcatacaagcaaaggtgt 227  Q
    |||| |||||||||| |||| ||||||||||||||||||| |||||||||||||    
T  6526732 atggattttgaaaacagatcttgtttctgtaacttggcattcaagcaaaggtgt 6526679  T

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Target: chr6; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 127 - 238
Target Start/End: Complemental strand, 6457783 - 6457672
Alignment:
Q  127 aagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgtttctgtaacttggcatacaagcaaaggtg 226  Q
    |||||| |||||||||| || || |||||||| |||||||| || |||||| | ||||||||  ||||||||||||| || |||||| | | |||||||     
T  6457783 aagtatcaaagcattgacggcgagcttgttggtgttgttggagactcatggttattgaaaactcatcctgtttctgttacatggcattccaccaaaggta 6457684  T
Q  227 taaaagaagaat 238  Q
    | || |||||||    
T  6457683 tcaatgaagaat 6457672  T

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Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Original strand, 6515764 - 6515820
Alignment:
Q  19 tataagtttaataagaaaggttcaggtgatttactgatgttagcacaccctcttcat 75  Q
    ||||||||| | ||||||||||||||||||||  |  ||||||||||||||||||||    
T  6515764 tataagtttgagaagaaaggttcaggtgatttgttattgttagcacaccctcttcat 6515820  T

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Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 43 - 84
Target Start/End: Complemental strand, 6528693 - 6528652
Alignment:
Q  43 ggtgatttactgatgttagcacaccctcttcatctccagctt 84  Q
    ||||||||  ||||||||||||||||||||||||| ||||||    
T  6528693 ggtgatttgttgatgttagcacaccctcttcatcttcagctt 6528652  T

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Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 120 - 212
Target Start/End: Original strand, 35231203 - 35231298
Alignment:
Q  120 tgattataagtataaaagcattgatggtgaacttgttggagttgttg---gtgattcatggcttttgaaaaccgatcctgtttctgtaacttggca 212  Q
    ||||| ||||||||||||||||||| ||||||||||||| |||||||   ||||| ||||||||||||||||| || |||||| ||||||||||||    
T  35231203 tgattttaagtataaaagcattgatagtgaacttgttggtgttgttggttgtgatccatggcttttgaaaaccaattctgtttttgtaacttggca 35231298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 120 - 227
Target Start/End: Complemental strand, 4046646 - 4046539
Alignment:
Q  120 tgattataagtataaaagcattgatggtgaacttgttggagttgttggtgattcatggcttttgaaaaccgatcctgtttctgtaacttggcatacaagc 219  Q
    ||||| ||||||||||||  |||||||||| |||||||| ||||||||  ||||||||  ||||||||| ||| |||||  |||||| |||||| |||      
T  4046646 tgattttaagtataaaagtgttgatggtgatcttgttggtgttgttggaaattcatggaatttgaaaactgattctgttaatgtaacatggcattcaaat 4046547  T
Q  220 aaaggtgt 227  Q
    ||||||||    
T  4046546 aaaggtgt 4046539  T

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Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 9665070 - 9665102
Alignment:
Q  126 taagtataaaagcattgatggtgaacttgttgg 158  Q
    |||||||||||||||||||||||| ||||||||    
T  9665070 taagtataaaagcattgatggtgatcttgttgg 9665102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Original strand, 13536094 - 13536126
Alignment:
Q  126 taagtataaaagcattgatggtgaacttgttgg 158  Q
    |||||||||||||||||||||||| ||||||||    
T  13536094 taagtataaaagcattgatggtgatcttgttgg 13536126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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