View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8051_low_7 (Length: 235)

Name: NF8051_low_7
Description: NF8051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8051_low_7
NF8051_low_7
[»] chr6 (7 HSPs)
chr6 (18-224)||(785249-785455)
chr6 (5-83)||(1334696-1334774)
chr6 (7-85)||(26402624-26402702)
chr6 (5-89)||(32225330-32225414)
chr6 (14-89)||(26178527-26178602)
chr6 (54-89)||(19369889-19369924)
chr6 (40-91)||(34197186-34197237)
[»] chr2 (4 HSPs)
chr2 (5-91)||(43585943-43586029)
chr2 (39-91)||(14450705-14450757)
chr2 (40-84)||(8300180-8300224)
chr2 (41-85)||(13501036-13501080)
[»] chr7 (5 HSPs)
chr7 (5-89)||(25956480-25956563)
chr7 (5-77)||(1885608-1885675)
chr7 (5-89)||(5937361-5937445)
chr7 (40-86)||(48963995-48964041)
chr7 (54-86)||(10702456-10702488)
[»] chr3 (1 HSPs)
chr3 (9-88)||(34834869-34834948)
[»] scaffold0314 (1 HSPs)
scaffold0314 (8-85)||(8986-9061)
[»] chr4 (8 HSPs)
chr4 (40-86)||(39619045-39619091)
chr4 (41-91)||(37496786-37496836)
chr4 (40-89)||(5998886-5998935)
chr4 (5-86)||(13307912-13307993)
chr4 (1-77)||(44362697-44362773)
chr4 (40-78)||(21152895-21152933)
chr4 (55-91)||(4790785-4790821)
chr4 (21-89)||(10635053-10635121)
[»] scaffold0122 (1 HSPs)
scaffold0122 (35-89)||(10247-10301)
[»] chr1 (2 HSPs)
chr1 (40-86)||(18950996-18951041)
chr1 (1-30)||(7888126-7888155)
[»] chr5 (3 HSPs)
chr5 (48-88)||(9031879-9031919)
chr5 (19-86)||(21319877-21319944)
chr5 (43-89)||(7621170-7621216)
[»] scaffold0504 (1 HSPs)
scaffold0504 (40-91)||(8640-8691)


Alignment Details
Target: chr6 (Bit Score: 199; Significance: 1e-108; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 18 - 224
Target Start/End: Complemental strand, 785455 - 785249
Alignment:
Q  18 gtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggtggttacatagtgtaacttttacaaaa 117  Q
    |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785455 gtgtcggtgtcgaacatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggtggttacatagtgtaacttttacaaaa 785356  T
Q  118 ttacactggttcaacttagtttaggtaaataatcatgatgctaaacatacacatagttttaactgcaactgtttgcgttgtggagaaataaatttgatgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  785355 ttacactggttcaacttagtttaggtaaataatcatgatgctaaacatacacatagttttaactgcaactgtttgcgttgtggagaaataaatttgatgt 785256  T
Q  218 tgatgtc 224  Q
    |||||||    
T  785255 tgatgtc 785249  T

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Target: chr6; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 83
Target Start/End: Original strand, 1334696 - 1334774
Alignment:
Q  5 aatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgca 83  Q
    ||||||||||||| ||||||||||| | | |||| |||||| |||||||||||||||||||||||||||||||||||||    
T  1334696 aatgtaatcacaaatgtcggtgtcgaacacgatgcgtgtcgaacaccaggacacaccttcaatcagaagtgtccgtgca 1334774  T

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Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 7 - 85
Target Start/End: Complemental strand, 26402702 - 26402624
Alignment:
Q  7 tgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaac 85  Q
    ||||||||||||||||||||||||| | |||   ||| |||||||  |||||  |||||||||||||||||||||||||    
T  26402702 tgtaatcacaagtgtcggtgtcggacacgatacatgttggacaccgagacacttcttcaatcagaagtgtccgtgcaac 26402624  T

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Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 32225414 - 32225330
Alignment:
Q  5 aatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 89  Q
    |||||||||||| |||||||||||||| | ||    ||||||||||| |||||||||||||||||| |||||  ||||| |||||    
T  32225414 aatgtaatcacaggtgtcggtgtcggacacgacccctgtcggacacctggacacaccttcaatcaggagtgtttgtgcagcagag 32225330  T

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Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 14 - 89
Target Start/End: Original strand, 26178527 - 26178602
Alignment:
Q  14 acaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 89  Q
    |||||| ||||||||||| | ||   |||||||||| | ||||| ||||||||||||||||||||||||| |||||    
T  26178527 acaagtatcggtgtcggacacgacacgtgtcggacatcgggacataccttcaatcagaagtgtccgtgcatcagag 26178602  T

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Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 54 - 89
Target Start/End: Original strand, 19369889 - 19369924
Alignment:
Q  54 gacacaccttcaatcagaagtgtccgtgcaacagag 89  Q
    ||||| ||||||||||||||||||||||||||||||    
T  19369889 gacacgccttcaatcagaagtgtccgtgcaacagag 19369924  T

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Target: chr6; HSP #7
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 91
Target Start/End: Original strand, 34197186 - 34197237
Alignment:
Q  40 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 91  Q
    |||||||| ||||||||||||||||||  ||||||||| |||||| ||||||    
T  34197186 gtgtcggagaccaggacacaccttcaactagaagtgtcagtgcaatagaggt 34197237  T

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Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 5 - 91
Target Start/End: Complemental strand, 43586029 - 43585943
Alignment:
Q  5 aatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 91  Q
    ||||||||||||||||||||||||||| | |||  ||||| |||||  |||||||||||||||||||||||| ||||||||||||||    
T  43586029 aatgtaatcacaagtgtcggtgtcggacacgatacgtgtcagacacatggacacaccttcaatcagaagtgttcgtgcaacagaggt 43585943  T

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Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 39 - 91
Target Start/End: Complemental strand, 14450757 - 14450705
Alignment:
Q  39 tgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 91  Q
    |||||| |||||| ||||||  |||||||||||||||||||||||||||||||    
T  14450757 tgtgtcagacaccgggacacgtcttcaatcagaagtgtccgtgcaacagaggt 14450705  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 8300224 - 8300180
Alignment:
Q  40 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaa 84  Q
    |||| ||||||| |||||| ||||||||||||||||||| |||||    
T  8300224 gtgttggacaccgggacacgccttcaatcagaagtgtccatgcaa 8300180  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 41 - 85
Target Start/End: Complemental strand, 13501080 - 13501036
Alignment:
Q  41 tgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaac 85  Q
    ||||||||  || |||||||||||||||||||||||| |||||||    
T  13501080 tgtcggacgtcaagacacaccttcaatcagaagtgtcggtgcaac 13501036  T

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Target: chr7 (Bit Score: 45; Significance: 9e-17; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 5 - 89
Target Start/End: Original strand, 25956480 - 25956563
Alignment:
Q  5 aatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 89  Q
    ||||||||||||||||||||||||||| | |||   ||||||||||  |||||| ||||||||||||||||||||||||| ||||    
T  25956480 aatgtaatcacaagtgtcggtgtcggacacgatacatgtcggacacg-ggacacgccttcaatcagaagtgtccgtgcaatagag 25956563  T

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Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 1885608 - 1885675
Alignment:
Q  5 aatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtc 77  Q
    |||||||||||||||||||||||||    || || ||||||||||||||||||||| ||||||||||||||||    
T  1885608 aatgtaatcacaagtgtcggtgtcg----tgttg-gtgtcggacaccaggacacacgttcaatcagaagtgtc 1885675  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 5 - 89
Target Start/End: Complemental strand, 5937445 - 5937361
Alignment:
Q  5 aatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 89  Q
    |||||||||||||||||| |||||||  | |||   ||||||||||||| | || ||||||||  ||||||||||||||| ||||    
T  5937445 aatgtaatcacaagtgtctgtgtcggtcacgatacatgtcggacaccagaatacgccttcaatatgaagtgtccgtgcaatagag 5937361  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 48964041 - 48963995
Alignment:
Q  40 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 86  Q
    |||||| ||||| ||||| |||||||||||||||||||| |||||||    
T  48964041 gtgtcgaacaccgggacataccttcaatcagaagtgtccatgcaaca 48963995  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 86
Target Start/End: Complemental strand, 10702488 - 10702456
Alignment:
Q  54 gacacaccttcaatcagaagtgtccgtgcaaca 86  Q
    |||||||||||||||||||||||| ||||||||    
T  10702488 gacacaccttcaatcagaagtgtcggtgcaaca 10702456  T

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Target: chr3 (Bit Score: 44; Significance: 3e-16; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 9 - 88
Target Start/End: Complemental strand, 34834948 - 34834869
Alignment:
Q  9 taatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacaga 88  Q
    ||||||| ||| |||||||||||  ||||   ||||||||||| |||||| |||||||||||||||||||||||||||||    
T  34834948 taatcacgagtatcggtgtcggacttgatacatgtcggacaccgggacacgccttcaatcagaagtgtccgtgcaacaga 34834869  T

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Target: scaffold0314 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: scaffold0314
Description:

Target: scaffold0314; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 8986 - 9061
Alignment:
Q  8 gtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaac 85  Q
    |||||||||||||||||||||  || |  ||||||||||||||| |||||| |||||||||||||||||| |||||||    
T  8986 gtaatcacaagtgtcggtgtc--atgtcgtgtgtgtcggacaccgggacacgccttcaatcagaagtgtctgtgcaac 9061  T

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Target: chr4 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 39619091 - 39619045
Alignment:
Q  40 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 86  Q
    |||||||||||| ||||||||||||||||||||||||||||||||||    
T  39619091 gtgtcggacaccgggacacaccttcaatcagaagtgtccgtgcaaca 39619045  T

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Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 41 - 91
Target Start/End: Original strand, 37496786 - 37496836
Alignment:
Q  41 tgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 91  Q
    ||||||||||| |||||| |||||||||| |||||||||||||||||||||    
T  37496786 tgtcggacaccgggacacgccttcaatcataagtgtccgtgcaacagaggt 37496836  T

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Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 40 - 89
Target Start/End: Original strand, 5998886 - 5998935
Alignment:
Q  40 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 89  Q
    |||||||||||| ||||||||||||||||| ||||||| |||||||||||    
T  5998886 gtgtcggacacctggacacaccttcaatcataagtgtcggtgcaacagag 5998935  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 5 - 86
Target Start/End: Original strand, 13307912 - 13307993
Alignment:
Q  5 aatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 86  Q
    ||||||||||||||||| ||||||||| | ||   ||||| ||||||| ||||  |||||||||||||||||  ||||||||    
T  13307912 aatgtaatcacaagtgttggtgtcggacacgacacgtgtcagacaccatgacatgccttcaatcagaagtgttggtgcaaca 13307993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 77
Target Start/End: Original strand, 44362697 - 44362773
Alignment:
Q  1 atttaatgtaatcacaagtgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtc 77  Q
    ||||||||||||||||||||| |||||| || | ||   || ||||||| | ||||||||||| |||||||||||||    
T  44362697 atttaatgtaatcacaagtgttggtgtcagacacgacacgtatcggacatcgggacacaccttaaatcagaagtgtc 44362773  T

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Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 78
Target Start/End: Complemental strand, 21152933 - 21152895
Alignment:
Q  40 gtgtcggacaccaggacacaccttcaatcagaagtgtcc 78  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  21152933 gtgtcggacatcaggacactccttcaatcagaagtgtcc 21152895  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 55 - 91
Target Start/End: Original strand, 4790785 - 4790821
Alignment:
Q  55 acacaccttcaatcagaagtgtccgtgcaacagaggt 91  Q
    ||||||||||||||||||||||| |||| ||||||||    
T  4790785 acacaccttcaatcagaagtgtcggtgctacagaggt 4790821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 89
Target Start/End: Original strand, 10635053 - 10635121
Alignment:
Q  21 tcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 89  Q
    |||||||| || |||||  |||||||||||| |||||   ||||||||||||| || ||||||||||||    
T  10635053 tcggtgtcagacatgatacgtgtcggacacccggacaactcttcaatcagaagagttcgtgcaacagag 10635121  T

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Target: scaffold0122 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0122
Description:

Target: scaffold0122; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 35 - 89
Target Start/End: Complemental strand, 10301 - 10247
Alignment:
Q  35 gatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 89  Q
    |||| |||||||||| ||||||||||||||||||||||||||| |||||| ||||    
T  10301 gatgcgtgtcggacagcaggacacaccttcaatcagaagtgtctgtgcaagagag 10247  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 40 - 86
Target Start/End: Original strand, 18950996 - 18951041
Alignment:
Q  40 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 86  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||    
T  18950996 gtgtcggacaccaggacacaccttcaatcagaagtgt-cgtgcaaca 18951041  T

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Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 7888126 - 7888155
Alignment:
Q  1 atttaatgtaatcacaagtgtcggtgtcgg 30  Q
    ||||||||||||||||||||||||||||||    
T  7888126 atttaatgtaatcacaagtgtcggtgtcgg 7888155  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000005; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 48 - 88
Target Start/End: Complemental strand, 9031919 - 9031879
Alignment:
Q  48 caccaggacacaccttcaatcagaagtgtccgtgcaacaga 88  Q
    ||||||||||| |||||||||||||||||||||||||||||    
T  9031919 caccaggacacgccttcaatcagaagtgtccgtgcaacaga 9031879  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 19 - 86
Target Start/End: Complemental strand, 21319944 - 21319877
Alignment:
Q  19 tgtcggtgtcggatatgatgtgtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaaca 86  Q
    ||||||||||||| | ||||| | ||| ||||||||| | |||||||||||||||||| |||||||||    
T  21319944 tgtcggtgtcggacacgatgtatatcgaacaccaggatagaccttcaatcagaagtgttcgtgcaaca 21319877  T

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Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 43 - 89
Target Start/End: Complemental strand, 7621216 - 7621170
Alignment:
Q  43 tcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagag 89  Q
    ||||||| ||||||||  |||||||||||||||||||||||||||||    
T  7621216 tcggacatcaggacacgtcttcaatcagaagtgtccgtgcaacagag 7621170  T

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Target: scaffold0504 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 91
Target Start/End: Complemental strand, 8691 - 8640
Alignment:
Q  40 gtgtcggacaccaggacacaccttcaatcagaagtgtccgtgcaacagaggt 91  Q
    ||||| |||||| |||||  ||||||||||||||||||||||||||||||||    
T  8691 gtgtcagacaccgggacatgccttcaatcagaagtgtccgtgcaacagaggt 8640  T

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