View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8051_low_8 (Length: 219)
Name: NF8051_low_8
Description: NF8051
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8051_low_8 |
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Alignment Details
Target: chr3 (Bit Score: 181; Significance: 6e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 38214489 - 38214301
Alignment:
| Q |
14 |
cacagggcccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaagg |
113 |
Q |
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| T |
38214489 |
cacagggaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaagg |
38214390 |
T |
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| Q |
114 |
aaacagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgt |
202 |
Q |
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| T |
38214389 |
aaacagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgt |
38214301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 14 - 202
Target Start/End: Complemental strand, 38218708 - 38218520
Alignment:
| Q |
14 |
cacagggcccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaagg |
113 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
38218708 |
cacagggaccgactcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccttacattctccacacaaacgtgttttctcaaggcaaagg |
38218609 |
T |
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| Q |
114 |
aaacagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgt |
202 |
Q |
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| T |
38218608 |
aaacagagaacaacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgt |
38218520 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 124; Significance: 6e-64; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 124; E-Value: 6e-64
Query Start/End: Original strand, 25 - 188
Target Start/End: Original strand, 42991051 - 42991214
Alignment:
| Q |
25 |
actcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaac |
124 |
Q |
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| T |
42991051 |
actcacgacgaaattgattttgagttcttgggaaatgttagcggtaatccttacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaac |
42991150 |
T |
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| Q |
125 |
aacaattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagcc |
188 |
Q |
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| T |
42991151 |
aacaattctacctctggtttgatcccaccaagaacttccacacttactctatcatctggaagcc |
42991214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 28 - 202
Target Start/End: Original strand, 35017721 - 35017895
Alignment:
| Q |
28 |
catgatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaac |
127 |
Q |
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|||||||| ||||||||||||||||| ||||| ||||| || || || ||||| ||||||||| | || ||||||| ||||| || |||||||||| |
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| T |
35017721 |
catgatgagattgattttgagttcttgggaaacacaagtggtgacccttatattcttcacacaaacatcttcactcaaggtaaaggtaatagagaacaac |
35017820 |
T |
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| Q |
128 |
aattctacctctggttcgacccaaccaagaacttccacacttactctatcatctggaagccacaacacattatgt |
202 |
Q |
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|||||||||| ||||| ||||| || | ||||||||||||||||| ||||| ||||| || |||||||| |||| |
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| T |
35017821 |
aattctacctatggtttgaccccactagaaacttccacacttactccatcatttggaaaccccaacacatcatgt |
35017895 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 37188574 - 37188695
Alignment:
| Q |
31 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
130 |
Q |
| |
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||||||||||| ||||| ||||| ||||| | ||||| || || |||||||| ||||| || |||||| ||||| ||||| |||||||| ||||||| |
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| T |
37188574 |
gatgaaattgactttgaattcttgggaaacttgagtggtgacccatacattcttcacaccaatgtgtttagccaaggaaaaggtaacagagagcaacaat |
37188673 |
T |
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| Q |
131 |
tctacctctggttcgacccaac |
152 |
Q |
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||||||| ||||| |||||||| |
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| T |
37188674 |
tctacctatggtttgacccaac |
37188695 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 132
Target Start/End: Original strand, 53494981 - 53495082
Alignment:
| Q |
31 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
130 |
Q |
| |
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||||| ||||| ||||| |||||||| ||||| ||||| || || |||| ||| ||||| || ||||||| |||||| |||||||| ||||||||||||| |
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| T |
53494981 |
gatgagattgactttgaattcttagggaatgtgagtggagaaccatacactcttcacaccaatgtgttttgtcaaggaaaaggaaatagagaacaacaat |
53495080 |
T |
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| Q |
131 |
tc |
132 |
Q |
| |
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|| |
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| T |
53495081 |
tc |
53495082 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 53498939 - 53499060
Alignment:
| Q |
31 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
130 |
Q |
| |
|
||||| ||||| ||||| ||||| |||||| | ||||| ||||| ||||| || ||||| || |||||| ||||||||||| |||||||| ||||||| |
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| T |
53498939 |
gatgagattgactttgaattcttgggaaatttgagtggtgatccttacatccttcacaccaatgtgtttagccaaggcaaaggtaacagagagcaacaat |
53499038 |
T |
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| Q |
131 |
tctacctctggttcgacccaac |
152 |
Q |
| |
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| T |
53499039 |
tttacctttggtttgacccaac |
53499060 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 152
Target Start/End: Original strand, 53492634 - 53492755
Alignment:
| Q |
31 |
gatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaat |
130 |
Q |
| |
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||||||||||| ||||| ||||| |||||| | ||||| ||||| ||||| || || || || |||||| ||||||||||| ||||||| |||||| |
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| T |
53492634 |
gatgaaattgactttgaattcttgggaaatttgagtggtgatccttacatccttcataccaatgtgtttagccaaggcaaaggtgacagagagcaacaaa |
53492733 |
T |
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| Q |
131 |
tctacctctggttcgacccaac |
152 |
Q |
| |
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| ||||| ||||| |||||||| |
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| T |
53492734 |
tttacctttggtttgacccaac |
53492755 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 53 - 150
Target Start/End: Original strand, 53502099 - 53502196
Alignment:
| Q |
53 |
taggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaacaacaattctacctctggttcgaccca |
150 |
Q |
| |
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|||||||||| ||||| || || ||||| || ||||| || || || |||||||||||||||||| |||||||||||||| || ||||| |||||| |
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| T |
53502099 |
taggaaatgtaagtggtgaaccatacatccttcacactaatgttttcagtcaaggcaaaggaaacagggaacaacaattctatctatggtttgaccca |
53502196 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 26 - 170
Target Start/End: Original strand, 52590708 - 52590852
Alignment:
| Q |
26 |
ctcatgatgaaattgattttgagttcttaggaaatgttagtggcgatccctacattctccacacaaacgtgttttctcaaggcaaaggaaacagagaaca |
125 |
Q |
| |
|
||||||||||||| |||||||| || || || || | ||||| ||||| || ||| | || |||||| | | | | ||||| |||||||| | |||||| |
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| T |
52590708 |
ctcatgatgaaatagattttgaatttttgggtaacttaagtggtgatccttatattgttcatacaaacatttatgcacaagggaaaggaaataaagaaca |
52590807 |
T |
|
| Q |
126 |
acaattctacctctggttcgacccaaccaagaacttccacactta |
170 |
Q |
| |
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||||||||| | ||||||||||| |||||| |||| |||||||| |
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| T |
52590808 |
acaattctatttgtggttcgaccccaccaaggactttcacactta |
52590852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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