View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8053_high_3 (Length: 519)
Name: NF8053_high_3
Description: NF8053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8053_high_3 |
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| [»] chr3 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 185 - 519
Target Start/End: Original strand, 45380584 - 45380918
Alignment:
| Q |
185 |
taatatttttgtcataaaaaatgaattggtctaaagtggtaaataacttaatcttcttaaacaagtgattaaatgattgattgggtacgaagaaaattca |
284 |
Q |
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| T |
45380584 |
taatatttttgtcatcaacaatgaattgatcta--gtgttaaataacttaaacttcttaaacaagtgattaaatgattgattgcgtacgaagaaaattca |
45380681 |
T |
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| Q |
285 |
gctaagagataagaactaacgcacatttgtatcaacacatactctgacaaaaattagtcacggtcaatgcgatcggacctgtaacatggaaaa-aattat |
383 |
Q |
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| T |
45380682 |
gctaggagataagaactaacgcacatttgtatcaacacatactctgacaaaaattagtcacggtcaatgcgatcggacctgtaacatggaaaagaattat |
45380781 |
T |
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| Q |
384 |
gc-atttcttttccttgtcataaacatcacctatctgtcttttctcttcctatttagttttatcctagaggtatatactatacacaatttcctaatcttg |
482 |
Q |
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| T |
45380782 |
gcttttttttttccttgtcataaacatcacctatctgtcttttcccttcctatttggttttatcctagagttatatattatacacaatctcctaatcttg |
45380881 |
T |
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| Q |
483 |
tgaaaatgcaattctattattaaaaggaattatttat |
519 |
Q |
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| T |
45380882 |
tgaaaatgcaattctattattaaaaggaattatttat |
45380918 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 159; E-Value: 2e-84
Query Start/End: Original strand, 17 - 193
Target Start/End: Original strand, 45379993 - 45380166
Alignment:
| Q |
17 |
agttcacccatatgatatgaggtacaacaacttatttactttcctctagttaattgacatttatcacatggccatttaaaaatacaaaaccataattttc |
116 |
Q |
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| T |
45379993 |
agttcacccatataatatgaggtacaacaacttatttactttcctctagttaattgacatttatcacatggccatttaaaaatacaaaaccataattttc |
45380092 |
T |
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| Q |
117 |
cttttacttgctcattaaattaacaatgttgccattctatattttcatttttacattcaagttacaattaatatttt |
193 |
Q |
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| T |
45380093 |
cttttacttgctcattaaattaacaatgttgcca---tatattttcatttttacattcaagttacaattaatatttt |
45380166 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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