View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8053_high_5 (Length: 444)
Name: NF8053_high_5
Description: NF8053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8053_high_5 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 201; Significance: 1e-109; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 201; E-Value: 1e-109
Query Start/End: Original strand, 224 - 444
Target Start/End: Complemental strand, 43367016 - 43366796
Alignment:
| Q |
224 |
tgatgcatacaccatcatcagtgaagagaaagaagacagacaagtccagaagactcatcggactccttcttgccagtttcctccgccgtcgtctcattca |
323 |
Q |
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| T |
43367016 |
tgatgcataaaccatcatcagtgaagagaaagaagacagacaagtccagaagactcatcggactccttctttccagtttcctccgccgtcgtctcattca |
43366917 |
T |
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| Q |
324 |
ccgcctcctcatttccgccatctccgtctgccttctccttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatcct |
423 |
Q |
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| T |
43366916 |
tcgcctcctcatttcctccatctccgtctgccttctctttcttttcatcatgctctctctcttcgctccttccccttttattgtaaatgctcttcatcct |
43366817 |
T |
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| Q |
424 |
tctacttcaattacattcctc |
444 |
Q |
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| T |
43366816 |
tctacttcaattacattcctc |
43366796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 116; E-Value: 7e-59
Query Start/End: Original strand, 17 - 190
Target Start/End: Complemental strand, 43367229 - 43367042
Alignment:
| Q |
17 |
catattcatctcattcttcttctacctctaattccatgcatttgtcgtaactgtaattgcaaacacaattataa---------taatcaataacgtacat |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
43367229 |
catattcatctcattcttcttctacctctaattccatgcatttgtcgtaactgtaattgcaaacacaattataataataataataatcaataacgtacat |
43367130 |
T |
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| Q |
108 |
tacattactccatgcattacatattaatatcatcactagctaacacatat--------atacatacaccaaactgtaattaatattcattc |
190 |
Q |
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| T |
43367129 |
tacattactccatgcattacatat---tatcatcactagctaacacatatatacatacatacatacaccaaactgtaattaatattcattc |
43367042 |
T |
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