View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8053_low_1 (Length: 597)
Name: NF8053_low_1
Description: NF8053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8053_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 554; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 554; E-Value: 0
Query Start/End: Original strand, 21 - 586
Target Start/End: Original strand, 37844300 - 37844865
Alignment:
| Q |
21 |
tccctaacattccatttgtcagcattgaccacaatctacatggagaaagcagtagggcagctgcccaaagacaaagagaagttacatttaatatggagac |
120 |
Q |
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| T |
37844300 |
tccctaacattccatttgtcagcattgaccacaatctacatggagaaagcagtagggcagctgcccaaagacaaagagaagttatatttaatatggagac |
37844399 |
T |
|
| Q |
121 |
ggatcctatggattattatagtgactttggcttttggcaggacactgaacatgaacctatggattattatagtgactctagcttttggcatgacgttgat |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
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| T |
37844400 |
ggatcctatggattattatagtgactttggcttttggcaggacactgaacatgaacctatggattattatagtgactctagcttttggcatgacattgat |
37844499 |
T |
|
| Q |
221 |
caatttctatctggattcggtgttgaagatgattggaatctcaaaccaacaatttgtattgatggacttttagttaaactgatgggaaatggtaagataa |
320 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
37844500 |
caatttctatctggattcggtgttgaagatgattggaatctcaaaccaacaatttgtattgatgggcttttagttaaactgatgggaaatggtaagataa |
37844599 |
T |
|
| Q |
321 |
tagctgaaaagcttgtgaaggtagctgctctgaatgttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagt |
420 |
Q |
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| T |
37844600 |
tagctgaaaagcttgtgaaggtagctgctctgaatgttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagt |
37844699 |
T |
|
| Q |
421 |
taccaaacctttcaattggttttttctctcacgttggggccaatatatgcaccttcaacaatccttgtattatcaacccaaatcatacttcttaaatgcc |
520 |
Q |
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| T |
37844700 |
taccaaacctttcaattggttttttctctcacgttggggccaatatatgcaccttcaacaatccttgtattatcaacccaaatcatacttcttaaatgcc |
37844799 |
T |
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| Q |
521 |
aataaaatcaatgcccttcaggacctagttttggaggctacagagaacctaaatgatcactatatt |
586 |
Q |
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| T |
37844800 |
aataaaatcaatgcccttcaggacctagttttggaggctacagagaacctaaatgatcactatatt |
37844865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 366 - 489
Target Start/End: Original strand, 35025487 - 35025610
Alignment:
| Q |
366 |
taacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattggttttttctctcacgttggggccaata |
465 |
Q |
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||||||||| ||||||| ||||||| |||||||||||| | ||||||| || |||||||||||||||| |||||||| || |||||||||| ||||| |
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| T |
35025487 |
taacctatgcttggcctagtttgatcttccttccctctatcactggtccaatacttaccaaacctttcaactggtttttcctaacacgttggggtcaata |
35025586 |
T |
|
| Q |
466 |
tatgcaccttcaacaatccttgta |
489 |
Q |
| |
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|| | |||| || |||||||||| |
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| T |
35025587 |
taggtacctgcagaaatccttgta |
35025610 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 340 - 523
Target Start/End: Original strand, 37846181 - 37846364
Alignment:
| Q |
340 |
ggtagctgctctgaatgttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattgg |
439 |
Q |
| |
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|||||||||||| | |||||||||| |||||||| |||||||||||||| |||||||||| | ||| ||| | |||| ||| |||||||||| |
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| T |
37846181 |
ggtagctgctctaattgttccaaaaataacctattcccagccttgtttgatttaccttccctctatcactgggccaacacttacacaacttttcaattgg |
37846280 |
T |
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| Q |
440 |
ttttttctctcacgttggggccaatatatgcaccttcaacaatccttgtattatcaacccaaatcatacttcttaaatgccaat |
523 |
Q |
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| T |
37846281 |
tttttcctctcacagtggggtcaatatatgtaccaaaagaaatccttgtattatcaacctaaatcatactttatacatgccaat |
37846364 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 355 - 474
Target Start/End: Original strand, 37851838 - 37851957
Alignment:
| Q |
355 |
tgttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattggttttttctctcacgt |
454 |
Q |
| |
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|||||||||| ||||||||| |||| || ||||||| |||| ||||||| | ||||||| || |||||||||||||||| |||||||| || |||| | |
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| T |
37851838 |
tgttccaaaaataacctatgcttggtctagtttgatcttccgtccctctatcactggtccaatacttaccaaacctttcaactggtttttcctatcacat |
37851937 |
T |
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| Q |
455 |
tggggccaatatatgcacct |
474 |
Q |
| |
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||||| ||||||| |||||| |
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| T |
37851938 |
tggggtcaatataggcacct |
37851957 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 357 - 491
Target Start/End: Original strand, 37838511 - 37838645
Alignment:
| Q |
357 |
ttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattggttttttctctcacgttg |
456 |
Q |
| |
|
|||||||| ||||||||| |||||| |||||| |||| ||||||| | |||||| || ||||||||||||||||||||||||| || |||||||| |
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| T |
37838511 |
ttccaaaaataacctatgcttggccaattttgatcttccgtccctctatcaccggtccaatacttaccaaacctttcaattggtttttcctatcacgttg |
37838610 |
T |
|
| Q |
457 |
gggccaatatatgcaccttcaacaatccttgtatt |
491 |
Q |
| |
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||| ||||||| ||||| || |||||||||||| |
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| T |
37838611 |
gggtcaatatagacacctgcagaaatccttgtatt |
37838645 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 545 - 586
Target Start/End: Original strand, 37837332 - 37837373
Alignment:
| Q |
545 |
ctagttttggaggctacagagaacctaaatgatcactatatt |
586 |
Q |
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||||||||||||||||||||||||||||||||||| |||||| |
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| T |
37837332 |
ctagttttggaggctacagagaacctaaatgatcagtatatt |
37837373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 340 - 467
Target Start/End: Original strand, 37832971 - 37833098
Alignment:
| Q |
340 |
ggtagctgctctgaatgttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattgg |
439 |
Q |
| |
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|||||||||||| | | |||||||| |||| |||| ||||| | ||||| ||| |||||||| | ||||||| || |||||||||||||||| ||| |
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| T |
37832971 |
ggtagctgctctaattcttccaaaaataacttatgcttggcgtcatttgaccttcattccctctatcaatggtccaatacttaccaaacctttcaactgg |
37833070 |
T |
|
| Q |
440 |
ttttttctctcacgttggggccaatata |
467 |
Q |
| |
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||||| || || |||||||| ||||||| |
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| T |
37833071 |
tttttcctatcgcgttggggtcaatata |
37833098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 355 - 489
Target Start/End: Original strand, 36867190 - 36867324
Alignment:
| Q |
355 |
tgttccaaaagtaacctatgtttggccttgtttgattttccttccctctggcgttggtccagtagttaccaaacctttcaattggttttttctctcacgt |
454 |
Q |
| |
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|||||||||| ||| ||||||||||||| ||||||| |||||||||||| | | || | || ||| |||||||||||| |||||||| || |||||| |
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| T |
36867190 |
tgttccaaaaataaactatgtttggcctagtttgatcttccttccctctatcactagtttaatacttatcaaacctttcaactggtttttcctatcacgt |
36867289 |
T |
|
| Q |
455 |
tggggccaatatatgcaccttcaacaatccttgta |
489 |
Q |
| |
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||||| ||||||| | |||| || |||||||||| |
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| T |
36867290 |
tggggtcaatataggtacctgcagaaatccttgta |
36867324 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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