View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8053_low_10 (Length: 284)

Name: NF8053_low_10
Description: NF8053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8053_low_10
NF8053_low_10
[»] chr8 (4 HSPs)
chr8 (97-268)||(3068773-3068944)
chr8 (93-268)||(3305824-3305999)
chr8 (97-183)||(3069064-3069150)
chr8 (97-183)||(3305618-3305704)
[»] chr7 (9 HSPs)
chr7 (97-268)||(32792988-32793159)
chr7 (93-268)||(24825765-24825940)
chr7 (97-268)||(11324253-11324424)
chr7 (97-270)||(37873416-37873589)
chr7 (96-270)||(37879053-37879227)
chr7 (97-183)||(24825558-24825644)
chr7 (98-183)||(32792783-32792868)
chr7 (93-165)||(9402555-9402627)
chr7 (95-164)||(11324050-11324119)
[»] scaffold0428 (2 HSPs)
scaffold0428 (93-268)||(7485-7660)
scaffold0428 (99-183)||(7765-7849)
[»] chr2 (6 HSPs)
chr2 (97-268)||(12414042-12414213)
chr2 (97-268)||(12426102-12426273)
chr2 (97-268)||(4731888-4732059)
chr2 (92-183)||(4731709-4731800)
chr2 (95-164)||(12413835-12413904)
chr2 (95-164)||(12425895-12425964)
[»] scaffold0291 (2 HSPs)
scaffold0291 (90-268)||(11260-11438)
scaffold0291 (97-268)||(10953-11124)
[»] chr4 (14 HSPs)
chr4 (97-268)||(41315898-41316069)
chr4 (99-268)||(15874229-15874398)
chr4 (96-268)||(20878691-20878863)
chr4 (97-268)||(42305904-42306074)
chr4 (92-268)||(38484455-38484632)
chr4 (96-259)||(23254591-23254754)
chr4 (96-268)||(55893212-55893381)
chr4 (90-182)||(42306195-42306287)
chr4 (93-183)||(23254372-23254462)
chr4 (97-178)||(55893466-55893547)
chr4 (92-179)||(15874522-15874609)
chr4 (93-180)||(41316192-41316278)
chr4 (98-166)||(38485175-38485243)
chr4 (98-142)||(20878988-20879032)
[»] chr3 (13 HSPs)
chr3 (97-268)||(31724352-31724523)
chr3 (96-268)||(33794432-33794603)
chr3 (98-268)||(40560664-40560834)
chr3 (96-268)||(14783733-14783905)
chr3 (93-268)||(5047999-5048174)
chr3 (97-268)||(20124654-20124826)
chr3 (106-268)||(2439975-2440137)
chr3 (92-183)||(2439764-2439855)
chr3 (97-183)||(5048294-5048380)
chr3 (96-166)||(14784027-14784098)
chr3 (97-164)||(31724657-31724724)
chr3 (96-179)||(40560472-40560554)
chr3 (98-179)||(33794727-33794806)
[»] chr1 (10 HSPs)
chr1 (90-268)||(52331612-52331790)
chr1 (97-268)||(34492434-34492605)
chr1 (95-268)||(7709907-7710080)
chr1 (98-268)||(37646862-37647032)
chr1 (99-234)||(13618340-13618475)
chr1 (97-183)||(52331406-52331492)
chr1 (98-183)||(7709700-7709785)
chr1 (99-214)||(13618543-13618658)
chr1 (93-163)||(34492232-34492302)
chr1 (97-164)||(13618255-13618322)
[»] chr5 (6 HSPs)
chr5 (96-268)||(31155547-31155719)
chr5 (98-268)||(39761519-39761689)
chr5 (98-268)||(31155893-31156063)
chr5 (95-183)||(39760421-39760509)
chr5 (96-183)||(31156183-31156270)
chr5 (97-158)||(31155369-31155430)
[»] chr6 (15 HSPs)
chr6 (97-268)||(33746711-33746882)
chr6 (96-268)||(16766287-16766459)
chr6 (97-270)||(11242291-11242464)
chr6 (96-268)||(16368805-16368977)
chr6 (123-268)||(20582813-20582958)
chr6 (96-255)||(6851247-6851406)
chr6 (93-265)||(11246259-11246431)
chr6 (98-177)||(16766556-16766635)
chr6 (97-174)||(29846978-29847055)
chr6 (100-180)||(20582638-20582718)
chr6 (95-163)||(33746961-33747029)
chr6 (97-164)||(16368640-16368707)
chr6 (216-268)||(29846921-29846973)
chr6 (97-164)||(29846788-29846855)
chr6 (97-164)||(6851549-6851615)
[»] scaffold0184 (2 HSPs)
scaffold0184 (98-268)||(7163-7328)
scaffold0184 (88-183)||(7008-7103)
[»] scaffold0032 (2 HSPs)
scaffold0032 (137-268)||(32959-33092)
scaffold0032 (91-183)||(33206-33298)
[»] scaffold1408 (1 HSPs)
scaffold1408 (93-213)||(1739-1859)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 9e-73; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 9e-73
Query Start/End: Original strand, 97 - 268
Target Start/End: Original strand, 3068773 - 3068944
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  3068773 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtc 3068872  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3068873 ttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 3068944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 3305999 - 3305824
Alignment:
Q  93 ttttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntc 192  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||  ||||||||||||||||||| ||||||||||||||||       ||    
T  3305999 ttttaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcttccttgtaaaataaaaatttagaaatcagtccccgcaaaaaaatc 3305900  T
Q  193 tgtcttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||||||||  |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  3305899 tgtcttttaaaaatacccctgtgcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 3305824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 3069150 - 3069064
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3069150 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 3069064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 3305618 - 3305704
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    |||||||||||||| ||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3305618 aggcttaaatattgaactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 3305704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 135; Significance: 2e-70; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 97 - 268
Target Start/End: Complemental strand, 32793159 - 32792988
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    |||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||    
T  32793159 aggcttaaatattgcactcgtccctgcaaatatagcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaaaaaatctgtc 32793060  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  32793059 ttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 32792988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 93 - 268
Target Start/End: Complemental strand, 24825940 - 24825765
Alignment:
Q  93 ttttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntc 192  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||       ||    
T  24825940 tttttggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgaaaaataaaaattcagaaatcagtccccgcaaaaaaatc 24825841  T
Q  193 tgtcttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||||||||||||||||||    
T  24825840 tgtcttttaaaaatacccctgggcccatttaagtcataacaagtcaccaaaatgcctacgtggcgcacgctgattg 24825765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 97 - 268
Target Start/End: Complemental strand, 11324424 - 11324253
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    |||||||||||||||| ||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||       ||||||    
T  11324424 aggcttaaatattgcattcgtccctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcagaaatcaatctccgcaaaaaaatctgtc 11324325  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||    
T  11324324 ttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacatggcgcacgctgattg 11324253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 37873416 - 37873589
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||       ||||||    
T  37873416 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaaaaattctgtc 37873515  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattgtg 270  Q
    |||||||||||||||||| ||||||||| | |||||| ||||| ||||||   ||||||||| |||||| ||||    
T  37873516 ttttaaaaatacccctgggcccatttaattgatgacaggtcaccaaaatgtacacgtggcgcgcgctgactgtg 37873589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 96 - 270
Target Start/End: Complemental strand, 37879227 - 37879053
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgt 195  Q
    ||||||||||||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||| |||| ||       |||||    
T  37879227 taggcttaaatattgtactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcaatccctgcaaaaaattctgt 37879128  T
Q  196 cttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattgtg 270  Q
    ||||||||||||||||||| ||||||||| | |||||| ||||| ||||||   ||||||||| |||||| ||||    
T  37879127 cttttaaaaatacccctgggcccatttaattgatgacaggtcaccaaaatgtacacgtggcgcgcgctgactgtg 37879053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 24825558 - 24825644
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  24825558 aggcttaaatattgcactcgtccctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcagaaatcagtctccgc 24825644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 32792783 - 32792868
Alignment:
Q  98 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    |||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  32792783 ggcttaaatattgcactcgtccttgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcaatccccgc 32792868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 93 - 165
Target Start/End: Original strand, 9402555 - 9402627
Alignment:
Q  93 ttttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaat 165  Q
    ||||||| |||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||    
T  9402555 ttttaggtttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaat 9402627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 11324050 - 11324119
Alignment:
Q  95 ttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaa 164  Q
    ||||| |||||||||||||||||||||| |||||||||||| ||||||||| |||| ||||||| |||||    
T  11324050 ttaggtttaaatattgcactcgtccctgcaaatatggcccgattaagttttcgtccctgtaaaaaaaaaa 11324119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428 (Bit Score: 131; Significance: 5e-68; HSPs: 2)
Name: scaffold0428
Description:

Target: scaffold0428; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 7485 - 7660
Alignment:
Q  93 ttttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntc 192  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||       ||    
T  7485 ttttatgcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttctaaaataaaaattcagaaatcaatccccgcaaaaaaatc 7584  T
Q  193 tgtcttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  7585 tgtcttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 7660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0428; HSP #2
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 99 - 183
Target Start/End: Complemental strand, 7849 - 7765
Alignment:
Q  99 gcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    |||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7849 gcttaaatattgcactcgtccctgcaaatatggcacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 7765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 131; Significance: 5e-68; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 97 - 268
Target Start/End: Complemental strand, 12414213 - 12414042
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||       ||||||    
T  12414213 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtc 12414114  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12414113 ttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 12414042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 97 - 268
Target Start/End: Complemental strand, 12426273 - 12426102
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    |||||||||||||||||||||||||| |||||||| |||||||||||||  ||||||||||||||||||||||||||||||||||||       ||||||    
T  12426273 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtc 12426174  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  12426173 ttttaaaaatacccctggacccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 12426102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 97 - 268
Target Start/End: Complemental strand, 4732059 - 4731888
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    ||||||||||||||||||| |||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||    
T  4732059 aggcttaaatattgcactcatccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatatgtc 4731960  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||| |||||| |||||||||||||||||||||||| |||||| |||||||||||||||||||||    
T  4731959 ttttaaaaatatccctgggcccatttaagtcatgacaagtcaccaaaatgtctacgtggcgcacgctgattg 4731888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 4731709 - 4731800
Alignment:
Q  92 attttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    ||||| ||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||    
T  4731709 atttttggcttaaatattgcactcgtccctgcaaatatggcccgtttaagatttggtccttgtaaaataaaaattcagaaatcagttcccgc 4731800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 12413835 - 12413904
Alignment:
Q  95 ttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaa 164  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| | ||||| |||||    
T  12413835 ttaggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttcgtccctctaaaaaaaaaa 12413904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 95 - 164
Target Start/End: Original strand, 12425895 - 12425964
Alignment:
Q  95 ttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaa 164  Q
    |||||||||||||||||||| ||||||| |||||||||||||||||||||| |||| | ||||| |||||    
T  12425895 ttaggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttcgtccctctaaaaaaaaaa 12425964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291 (Bit Score: 130; Significance: 2e-67; HSPs: 2)
Name: scaffold0291
Description:

Target: scaffold0291; HSP #1
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 90 - 268
Target Start/End: Complemental strand, 11438 - 11260
Alignment:
Q  90 ttattttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnn 189  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||          
T  11438 ttatattaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaa 11339  T
Q  190 ntctgtcttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
     |||||||||||||||||||||||| |||||||| || |||||||||||  ||||||||||||||||||||||||||||    
T  11338 atctgtcttttaaaaatacccctgggcccatttaggttatgacaagtcatcaaaatgcctacgtggcgcacgctgattg 11260  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0291; HSP #2
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 97 - 268
Target Start/End: Original strand, 10953 - 11124
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    |||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||       ||||||    
T  10953 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaaattttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaaatctgtc 11052  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||||| |||||||| || |||||||||||  ||||||||||||||||||||||||||||    
T  11053 ttttaaaaatacccctgggcccatttaggttatgacaagtcatcaaaatgcctacgtggcgcacgctgattg 11124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 127; Significance: 1e-65; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 97 - 268
Target Start/End: Original strand, 41315898 - 41316069
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    |||||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||    
T  41315898 aggcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtc 41315997  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  41315998 ttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggtgcacgctgattg 41316069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 99 - 268
Target Start/End: Original strand, 15874229 - 15874398
Alignment:
Q  99 gcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtctt 198  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | ||||||    
T  15874229 gcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatttgtctt 15874328  T
Q  199 ttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||| | |||||||| ||||||||||||| ||||||||||||||||||||||||||||    
T  15874329 ttaaaaatacccctgggcgcatttaaggcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 15874398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 96 - 268
Target Start/End: Original strand, 20878691 - 20878863
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgt 195  Q
    |||||||||| ||| ||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||| |    
T  20878691 taggcttaaacattccactcatccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctat 20878790  T
Q  196 cttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  20878791 cttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 20878863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 97 - 268
Target Start/End: Original strand, 42305904 - 42306074
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    |||||||||||||||||||||||||| |||||||| ||||||||||||| ||||| |||||||||||||||||||||||||||||||       ||||||    
T  42305904 aggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtcctcgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtc 42306003  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||| | |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  42306004 ttttaaaaatacccct-gtcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 42306074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 92 - 268
Target Start/End: Original strand, 38484455 - 38484632
Alignment:
Q  92 attttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc-nnnnnnn 190  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   ||            
T  38484455 attttaggcttaaatattgcactcgtctctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtctttgcaaaaaaaa 38484554  T
Q  191 tctgtcttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38484555 tctgtcttttaaaaatatccctgggtccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 38484632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 96 - 259
Target Start/End: Complemental strand, 23254754 - 23254591
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgt 195  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  23254754 taggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 23254655  T
Q  196 cttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgca 259  Q
    ||||||||||||| ||||| | |||||||||||||||||||||| ||||| |||||||||||||    
T  23254654 cttttaaaaatactcctgggctcatttaagtcatgacaagtcaccaaaatacctacgtggcgca 23254591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 96 - 268
Target Start/End: Original strand, 55893212 - 55893381
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgt 195  Q
    |||||||||||||||||| |||| ||| |||||||||||||||||||||||||  |||||||||||||||||||||||   |||||||       |||||    
T  55893212 taggcttaaatattgcacccgtctctgcaaatatggcccgtttaagttttggttattgtaaaataaaaattcagaaat---tccccgcaaaaaaatctgt 55893308  T
Q  196 cttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||||||||||| ||||    
T  55893309 cttttaaaaatagccctgggctcatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctaattg 55893381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 90 - 182
Target Start/End: Complemental strand, 42306287 - 42306195
Alignment:
Q  90 ttattttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccg 182  Q
    ||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42306287 ttattttaggcttaaatattgaactcgtccctccaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccg 42306195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 93 - 183
Target Start/End: Original strand, 23254372 - 23254462
Alignment:
Q  93 ttttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    |||| ||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23254372 tttttggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 23254462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 97 - 178
Target Start/End: Complemental strand, 55893547 - 55893466
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtc 178  Q
    |||||||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||    
T  55893547 aggcttaaatattgcactcgtccctgtaaatatggctcgtttaagttttggtccttgaaaaataaaaattcagaaatcagtc 55893466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 92 - 179
Target Start/End: Complemental strand, 15874609 - 15874522
Alignment:
Q  92 attttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 179  Q
    |||| |||||||| ||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||    
T  15874609 atttaaggcttaagtattgcactcgtccctgcaaatatgccccgtttaagttttggtctttgtaaaataaaaattcagaaatcagtcc 15874522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 93 - 180
Target Start/End: Complemental strand, 41316278 - 41316192
Alignment:
Q  93 ttttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 180  Q
    |||||||||||||||||||||||||||||| ||||||||  |||||||||||||||||||||||||| |||||||||||||| |||||    
T  41316278 ttttaggcttaaatattgcactcgtccctgcaaatatggttcgtttaagttttggtccttgtaaaat-aaaattcagaaatccgtccc 41316192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 98 - 166
Target Start/End: Complemental strand, 38485243 - 38485175
Alignment:
Q  98 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaatt 166  Q
    ||||||||||||||||||||||||| ||||||| |||||||||||||| |||| ||||||| |||||||    
T  38485243 ggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtccctgtaaaaaaaaaatt 38485175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 98 - 142
Target Start/End: Complemental strand, 20879032 - 20878988
Alignment:
Q  98 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagt 142  Q
    |||||||||||| |||||||||||| |||||||||||||||||||    
T  20879032 ggcttaaatattacactcgtccctgcaaatatggcccgtttaagt 20878988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 127; Significance: 1e-65; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 97 - 268
Target Start/End: Original strand, 31724352 - 31724523
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    ||||||||||||||||||||||| || ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||       | ||||    
T  31724352 aggcttaaatattgcactcgtccatgcaaatatggcccgtttaaattttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatttgtc 31724451  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31724452 ttttaaaaatacccttggacccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 31724523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 96 - 268
Target Start/End: Original strand, 33794432 - 33794603
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgt 195  Q
    ||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||    
T  33794432 taggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc-aaaaaatctgt 33794530  T
Q  196 cttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||| |||||||||||    
T  33794531 cttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcacacgctgattg 33794603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 40560834 - 40560664
Alignment:
Q  98 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtct 197  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  40560834 ggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtct 40560735  T
Q  198 tttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||| ||||||||||||||||||| |||||||||| |||||||||| |||||||||||    
T  40560734 tttaaaaatacccctgggcccatttaagtcatgacaaatcactaaaatacctacgtggcacacgctgattg 40560664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 96 - 268
Target Start/End: Original strand, 14783733 - 14783905
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgt 195  Q
    ||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||    
T  14783733 taggcttaaatattgcacttgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatttgt 14783832  T
Q  196 cttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    | ||||||||| ||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||||||||    
T  14783833 cgtttaaaaatgcccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgtacgctgattg 14783905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 119; E-Value: 8e-61
Query Start/End: Original strand, 93 - 268
Target Start/End: Original strand, 5047999 - 5048174
Alignment:
Q  93 ttttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntc 192  Q
    ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||       ||    
T  5047999 ttttaggcttaaatattgcactcgtccttgtaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgcgaaaaaatc 5048098  T
Q  193 tgtcttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    | ||||||||||||||||||||  |||||||||| |||||||||||| |||||||||||||||| |||||||||||    
T  5048099 tatcttttaaaaatacccctgggtccatttaagtaatgacaagtcaccaaaatgcctacgtggcacacgctgattg 5048174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 97 - 268
Target Start/End: Original strand, 20124654 - 20124826
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||       | ||||    
T  20124654 aggcttaaatattgcactcgtccctgtaaatatggtccgtttaagttttggtctttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatatgtc 20124753  T
Q  197 ttttaaaaatacccct-ggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||| || ||||||||||| |||||||||||| ||||||||||||| ||||||||||||||    
T  20124754 ttttaaaaatacccctggggcccatttaagtaatgacaagtcaccaaaatgcctacgtagcgcacgctgattg 20124826  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 106 - 268
Target Start/End: Complemental strand, 2440137 - 2439975
Alignment:
Q  106 tattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtcttttaaaaa 205  Q
    |||||||||||||| ||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||       |||||||||||||||    
T  2440137 tattgcactcgtccttgtaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtcttttaaaaa 2440038  T
Q  206 tacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||  |||||||||| |||||||||||| ||||||||||| ||||||||||||||||    
T  2440037 tacccctgggtccatttaagtaatgacaagtcaccaaaatgcctacatggcgcacgctgattg 2439975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 92 - 183
Target Start/End: Original strand, 2439764 - 2439855
Alignment:
Q  92 attttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||    
T  2439764 attttaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctcgtaaaataaaaattcagaaatcaatccccgc 2439855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 79; E-Value: 6e-37
Query Start/End: Original strand, 97 - 183
Target Start/End: Complemental strand, 5048380 - 5048294
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  5048380 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtcctcgtaaaataaaaattcagaaatcagtccccgc 5048294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 96 - 166
Target Start/End: Complemental strand, 14784098 - 14784027
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgt-aaaataaaaatt 166  Q
    ||||||||||||||||||||||||||| ||||||| |||||||||||||| |||| ||| ||||||||||||    
T  14784098 taggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttcgtccctgtaaaaataaaaatt 14784027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 31724724 - 31724657
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaa 164  Q
    ||||||||||||||||||||||| || |||||||||||||||||||||| ||||  ||||| ||||||    
T  31724724 aggcttaaatattgcactcgtccttgcaaatatggcccgtttaagtttttgtcccggtaaattaaaaa 31724657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 96 - 179
Target Start/End: Original strand, 40560472 - 40560554
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 179  Q
    |||||||||||||||||| |||||||| ||||||| | ||||| | |||| |||| ||||||| ||||||||||||||||||||    
T  40560472 taggcttaaatattgcacccgtccctgcaaatatgcctcgttttaattttagtccctgtaaaa-aaaaattcagaaatcagtcc 40560554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 98 - 179
Target Start/End: Complemental strand, 33794806 - 33794727
Alignment:
Q  98 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcc 179  Q
    ||||||||||||||||||||||||| ||||||| | ||||| | |||| |||| ||||||  ||||| ||||||||||||||    
T  33794806 ggcttaaatattgcactcgtccctgcaaatatgcctcgttttaattttagtccctgtaaa--aaaaaatcagaaatcagtcc 33794727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 126; Significance: 5e-65; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 126; E-Value: 5e-65
Query Start/End: Original strand, 90 - 268
Target Start/End: Complemental strand, 52331790 - 52331612
Alignment:
Q  90 ttattttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnn 189  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||          
T  52331790 ttattttaggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttgatccttgtaaaataaaaatttagaaatcagtccccgcaaaaaa 52331691  T
Q  190 ntctgtcttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
     | | |||||||||||||||||||| |||||||||||||||||||||||  ||||||||||||||||||||||||||||    
T  52331690 atttatcttttaaaaatacccctgggcccatttaagtcatgacaagtcatcaaaatgcctacgtggcgcacgctgattg 52331612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 97 - 268
Target Start/End: Complemental strand, 34492605 - 34492434
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    ||||||||||||||||||||| |||| |||||||| | |||||||||||||||||||||||||||||||||||| |||||| |||||       ||| ||    
T  34492605 aggcttaaatattgcactcgttcctgcaaatatggtctgtttaagttttggtccttgtaaaataaaaattcagacatcagttcccgcaaaaaaatctatc 34492506  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  34492505 ttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 34492434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 95 - 268
Target Start/End: Complemental strand, 7710080 - 7709907
Alignment:
Q  95 ttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctg 194  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||| |||||||||||||||||||||||||||||||||  ||       ||||    
T  7710080 ttaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttcgtccttgtaaaataaaaattcagaaatcagtccttgcaaaaaaatctg 7709981  T
Q  195 tcttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||| ||| |||||||    
T  7709980 tcttttaaaaatacccctgtgcccatttaagtcatgacaagtcaccaaaatgcctacgtggcacacactgattg 7709907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 110; E-Value: 2e-55
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 37647032 - 37646862
Alignment:
Q  98 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtct 197  Q
    ||||||||||||||| ||||  ||| ||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||  ||       |||||||    
T  37647032 ggcttaaatattgcattcgtttctgcaaatatggctcgtttaagttttggtccttgtaaaataaaaattcaaaaatcagtccgtgcaaaaaaatctgtct 37646933  T
Q  198 tttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  37646932 tttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 37646862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 99 - 234
Target Start/End: Complemental strand, 13618475 - 13618340
Alignment:
Q  99 gcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtctt 198  Q
    |||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||       ||||||||    
T  13618475 gcttaaatattgcattcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaaatcagaaatcaatcccagcaaaaaaatctgtctt 13618376  T
Q  199 ttaaaaatacccctggacccatttaagtcatgacaa 234  Q
    |||||||||||||||| |||||||||||||||||||    
T  13618375 ttaaaaatacccctgggcccatttaagtcatgacaa 13618340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 97 - 183
Target Start/End: Original strand, 52331406 - 52331492
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52331406 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 52331492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 98 - 183
Target Start/End: Original strand, 7709700 - 7709785
Alignment:
Q  98 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7709700 ggcttaaatattgaactcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 7709785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 99 - 214
Target Start/End: Complemental strand, 13618658 - 13618543
Alignment:
Q  99 gcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtctt 198  Q
    |||||||||||||| ||||||||| |||||||| |||||||||||||||||||||||||||||||| |||||||||| |||| ||       ||||||||    
T  13618658 gcttaaatattgcattcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaaatcagaaatcaatcccagcaaaaaaatctgtctt 13618559  T
Q  199 ttaaaaatacccctgg 214  Q
    ||||||||||||||||    
T  13618558 ttaaaaatacccctgg 13618543  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 93 - 163
Target Start/End: Original strand, 34492232 - 34492302
Alignment:
Q  93 ttttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaa 163  Q
    |||| ||||||||||||||||||||||||| |||||||||||||||||||||| |||| ||||||| ||||    
T  34492232 tttttggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtccgtgtaaaaaaaaa 34492302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 13618255 - 13618322
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaa 164  Q
    ||||||||||||||||||| |||||| ||||||| |||||||||||||| |||| ||||||| |||||    
T  13618255 aggcttaaatattgcactcttccctgcaaatatgacccgtttaagttttagtccctgtaaaaaaaaaa 13618322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 124; Significance: 8e-64; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 124; E-Value: 8e-64
Query Start/End: Original strand, 96 - 268
Target Start/End: Complemental strand, 31155719 - 31155547
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgt 195  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||       | |||    
T  31155719 taggcttaaatattgcactcgtccctgcaaatatgacccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatatgt 31155620  T
Q  196 cttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||| ||| |||||||||||||||||||||||| |||||||||||||| |||||||||||||    
T  31155619 cttttaaaaatacccttgggcccatttaagtcatgacaagtcaccaaaatgcctacgtgacgcacgctgattg 31155547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 114; E-Value: 7e-58
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 39761689 - 39761519
Alignment:
Q  98 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtct 197  Q
    ||||||||||||||||| ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||       ||| |||    
T  39761689 ggcttaaatattgcacttgtccctgcaaatatggcacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccctgcaaaaaaatctatct 39761590  T
Q  198 tttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| |||||||||||    
T  39761589 tttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcttacgtggcacacgctgattg 39761519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 106; E-Value: 4e-53
Query Start/End: Original strand, 98 - 268
Target Start/End: Original strand, 31155893 - 31156063
Alignment:
Q  98 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtct 197  Q
    |||||||||||||  |||||||||| ||||||| | |||||||||||||||||||||||||||||||||||||||||||||| |||       | |||||    
T  31155893 ggcttaaatattgatctcgtccctgcaaatatgacacgtttaagttttggtccttgtaaaataaaaattcagaaatcagtcctcgcaaaaaaatatgtct 31155992  T
Q  198 tttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||| ||||||||||| |||||||||||| ||||||| ||||||||||||||||||||    
T  31155993 tttaaaaatacccctgggcccatttaagttatgacaagtcaccaaaatgcttacgtggcgcacgctgattg 31156063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 77; E-Value: 9e-36
Query Start/End: Original strand, 95 - 183
Target Start/End: Original strand, 39760421 - 39760509
Alignment:
Q  95 ttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    |||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  39760421 ttaggcttaaatattgcactcgtccctgcaaatatggtccgtttaagttttggtccttgtaaaataaaaattcagaaattagtccccgc 39760509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 96 - 183
Target Start/End: Complemental strand, 31156270 - 31156183
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    ||||||||||||||||| ||||||||  |||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  31156270 taggcttaaatattgcattcgtccctacaaatatggtccgtttaagttttggttcttgtaaaataaaaattcagaaatcagtccccgc 31156183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 97 - 158
Target Start/End: Original strand, 31155369 - 31155430
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaa 158  Q
    |||||||||||||| |||||||| || ||||||||||||||||| |||| ||||||||||||    
T  31155369 aggcttaaatattgtactcgtccatgcaaatatggcccgtttaattttttgtccttgtaaaa 31155430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 123; Significance: 3e-63; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 123; E-Value: 3e-63
Query Start/End: Original strand, 97 - 268
Target Start/End: Original strand, 33746711 - 33746882
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||| |||| ||       ||||||    
T  33746711 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttcgtccatgtaaaataaaaattcagaaatcaatccctgcaaaaaaatctgtc 33746810  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33746811 ttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaaaatgcctacgtggcgcacgctgattg 33746882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 96 - 268
Target Start/End: Original strand, 16766287 - 16766459
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgt 195  Q
    ||||||||||||||||||||||||||| ||||||| ||| |||||||||||||| |||||||||||||||||||||||||||||||||       |||||    
T  16766287 taggcttaaatattgcactcgtccctgcaaatatgacccatttaagttttggtctttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgt 16766386  T
Q  196 cttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||| ||| ||||||||||||||| |||||||| ||||||||||||||||||||||||||||    
T  16766387 cttttaaaaatacccttgggcccatttaagtcatggcaagtcaccaaaatgcctacgtggcgcacgctgattg 16766459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 97 - 270
Target Start/End: Original strand, 11242291 - 11242464
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc 196  Q
    ||||||||||||||||||||||||  |||||||||| | ||||||||||| ||||||||||||||||||||||||||||||||||||       ||||||    
T  11242291 aggcttaaatattgcactcgtccccataaatatggctcatttaagttttgatccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtc 11242390  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattgtg 270  Q
    |||||||||||| | |||||||||||||||||||||| || || ||||||||||||||||| ||||||| ||||    
T  11242391 ttttaaaaatactcatggacccatttaagtcatgacaggtgaccaaaatgcctacgtggcgtacgctgactgtg 11242464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 104; E-Value: 7e-52
Query Start/End: Original strand, 96 - 268
Target Start/End: Complemental strand, 16368977 - 16368805
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgt 195  Q
    ||||||||||||||||||||||||||| |||||||  |||||||||||||||||| |||||||| ||||||||||||||||||||  |       | |||    
T  16368977 taggcttaaatattgcactcgtccctgcaaatatgatccgtttaagttttggtccgtgtaaaatgaaaattcagaaatcagtccctacaaaaaaatttgt 16368878  T
Q  196 cttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||||| ||||||||| |||||||||||||| ||||||||||||||||||||||| ||||    
T  16368877 cttttaaaaatacccctgggcccatttaaatcatgacaagtcaccaaaatgcctacgtggcgcacgctaattg 16368805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 123 - 268
Target Start/End: Complemental strand, 20582958 - 20582813
Alignment:
Q  123 taaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtcttttaaaaatacccctggacccattt 222  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||       ||||||||||||||||| |||||| |||||||    
T  20582958 taaatatggcccgtttaagttttggtccttgtaaaataaaaatttagaaatcagaccccgcaaaaaaatctgtcttttaaaaatatccctgggcccattt 20582859  T
Q  223 aagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||||||||||||||  ||||||||||||||||||||||||||||    
T  20582858 aagtcatgacaagtcatcaaaatgcctacgtggcgcacgctgattg 20582813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 96 - 255
Target Start/End: Original strand, 6851247 - 6851406
Alignment:
Q  96 taggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgt 195  Q
    |||||||||||||||||||||||| || |||||||  ||||||||||||||||| ||||||||||||||||||||||||||| ||| |        ||||    
T  6851247 taggcttaaatattgcactcgtccatgcaaatatgatccgtttaagttttggtctttgtaaaataaaaattcagaaatcagttcccacaaaaaaaactgt 6851346  T
Q  196 cttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtgg 255  Q
    |||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||    
T  6851347 cttttaaaaatacccctggatccatttaagtcatgacaagtcaccaaaatgcttacgtgg 6851406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 93 - 265
Target Start/End: Complemental strand, 11246431 - 11246259
Alignment:
Q  93 ttttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntc 192  Q
    ||||||||||||||||||||||| |||||| |||||||  | ||||||||||  |||||||||||||||||||||| |||||||||||| |       |     
T  11246431 ttttaggcttaaatattgcactcatccctgcaaatatgatctgtttaagtttgagtccttgtaaaataaaaattcacaaatcagtccccacaaaaaaatt 11246332  T
Q  193 tgtcttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctga 265  Q
    ||||||||| |||||||||| || | ||||||||||||| | || || |||||||||||||| ||||||||||    
T  11246331 tgtcttttataaatacccctagatctatttaagtcatgaaaggttaccaaaatgcctacgtgacgcacgctga 11246259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 98 - 177
Target Start/End: Complemental strand, 16766635 - 16766556
Alignment:
Q  98 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagt 177  Q
    ||||||||||||||| ||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  16766635 ggcttaaatattgcaatcgtccctgcaaatatggcccgtttatgttttggtccttgtaaaataaaaattcagaaatcagt 16766556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 97 - 174
Target Start/End: Complemental strand, 29847055 - 29846978
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatc 174  Q
    |||||||||||||||||||||||||| ||||||||||||||||||||||||||  |||||||||||||||||||||||    
T  29847055 aggcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtctctgtaaaataaaaattcagaaatc 29846978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 180
Target Start/End: Original strand, 20582638 - 20582718
Alignment:
Q  100 cttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 180  Q
    ||||||||||||||||||||||  |||||| | ||||||||||||||||||||||||||||||||||||||||||||||||    
T  20582638 cttaaatattgcactcgtccctacaaatatagtccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccc 20582718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 163
Target Start/End: Complemental strand, 33747029 - 33746961
Alignment:
Q  95 ttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaa 163  Q
    ||||||||||||||||||| |||||||| |||||||||||||||||||||| |||||||||||| ||||    
T  33747029 ttaggcttaaatattgcacccgtccctgcaaatatggcccgtttaagttttcgtccttgtaaaaaaaaa 33746961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 16368640 - 16368707
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaa 164  Q
    |||||||||||||||||||||||||| |||||||||  ||||||||||| |||| ||||||| |||||    
T  16368640 aggcttaaatattgcactcgtccctgcaaatatggcatgtttaagttttcgtccctgtaaaaaaaaaa 16368707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 216 - 268
Target Start/End: Complemental strand, 29846973 - 29846921
Alignment:
Q  216 cccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||||||||||| ||| ||||||||||||||| ||||||||    
T  29846973 cccatttaagtcatgacaagtcaccaaattgcctacgtggcgcaagctgattg 29846921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 97 - 164
Target Start/End: Original strand, 29846788 - 29846855
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaa 164  Q
    |||||||||||||||||||||||||| ||||||||  | |||||||||| |||| ||||||| |||||    
T  29846788 aggcttaaatattgcactcgtccctgcaaatatgggtcatttaagttttcgtccctgtaaaaaaaaaa 29846855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 97 - 164
Target Start/End: Complemental strand, 6851615 - 6851549
Alignment:
Q  97 aggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaa 164  Q
    ||||||||||||||||| |||| ||| ||||||||| |||||||||||| || | ||||||| |||||    
T  6851615 aggcttaaatattgcac-cgtctctgcaaatatggctcgtttaagttttcgttcctgtaaaaaaaaaa 6851549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184 (Bit Score: 100; Significance: 2e-49; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 98 - 268
Target Start/End: Complemental strand, 7328 - 7163
Alignment:
Q  98 ggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntctgtc- 196  Q
    ||||||||||||| | ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||     
T  7328 ggcttaaatattggattcgtccctgcaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaatctgtct 7229  T
Q  197 ttttaaaaatacccctggacccatttaagtcatgacaagtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    |||||||||||||||||| |||||||||||||||||||||||| ||      ||||||||||||||||||||    
T  7228 ttttaaaaatacccctgggcccatttaagtcatgacaagtcaccaa------tacgtggcgcacgctgattg 7163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 88 - 183
Target Start/End: Original strand, 7008 - 7103
Alignment:
Q  88 aattattttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    ||||| || ||||||||||||||||||||| |||| |||||||| |||||||||||||||||||| |||||||||||||||||||||| |||||||    
T  7008 aattaattaaggcttaaatattgcactcgttcctgcaaatatggtccgtttaagttttggtccttataaaataaaaattcagaaatcaatccccgc 7103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032 (Bit Score: 90; Significance: 2e-43; HSPs: 2)
Name: scaffold0032
Description:

Target: scaffold0032; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 137 - 268
Target Start/End: Original strand, 32959 - 33092
Alignment:
Q  137 ttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnn--tctgtcttttaaaaatacccctggacccatttaagtcatgacaa 234  Q
    |||||||||||||||||||||||||||||||||||||||||||||||         |||||||||||||||||||||||||||||| |||||||||||||    
T  32959 ttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcaaaaaaaaatctgtcttttaaaaatacccctggacccatataagtcatgacaa 33058  T
Q  235 gtcactaaaatgcctacgtggcgcacgctgattg 268  Q
    ||||| |||||||||| |||||||||||||||||    
T  33059 gtcaccaaaatgcctatgtggcgcacgctgattg 33092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0032; HSP #2
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 91 - 183
Target Start/End: Complemental strand, 33298 - 33206
Alignment:
Q  91 tattttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgc 183  Q
    ||||| ||| |||||||||||||||||||||| |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  33298 tatttaaggtttaaatattgcactcgtccctgcaaatatggtccgtttatgttttggtccttgtaaaataaaaattcagaaatcagtccccgc 33206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1408 (Bit Score: 84; Significance: 6e-40; HSPs: 1)
Name: scaffold1408
Description:

Target: scaffold1408; HSP #1
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 93 - 213
Target Start/End: Original strand, 1739 - 1859
Alignment:
Q  93 ttttaggcttaaatattgcactcgtccctgtaaatatggcccgtttaagttttggtccttgtaaaataaaaattcagaaatcagtccccgcnnnnnnntc 192  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||       ||    
T  1739 ttttatgcttaaatattgcactcgtccctgcaaatatggcccgtttaagttttggtccttctaaaataaaaattcagaaatcaatccccgcaaaaaaatc 1838  T
Q  193 tgtcttttaaaaatacccctg 213  Q
    |||||||||||||||||||||    
T  1839 tgtcttttaaaaatacccctg 1859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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