View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8053_low_12 (Length: 248)
Name: NF8053_low_12
Description: NF8053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8053_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 230
Target Start/End: Complemental strand, 56165427 - 56165201
Alignment:
| Q |
1 |
tggtgtaaaccaatatgctattaacctccaaagttccacttcttaattaaatctctttccttactatattgaacccaaaattctgctgcaagctctgtca |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
56165427 |
tggtgtaaaccaatatgctattaacctccaaagttccacttcttaattaaatctctttccttactatattgaacccaaaattctgctgcaagctctgtca |
56165328 |
T |
|
| Q |
101 |
atcacttaaccgcacgaacaaaacaagaggaatcgcagcagtcacaccaatccaaatggtcctcctaatgctggtaggaatgaaaccaggcctgtaatat |
200 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
56165327 |
atcgcttaaccgcacgaacaaaacaagaggaatcgcagcagtcacaccaatccaaatgg---tcctaatgctggtaggaatgaaaccaggcctgtaatat |
56165231 |
T |
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| Q |
201 |
tgaaaattctgtacttattatccattcaat |
230 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
56165230 |
tgaaaattctgtacttattatccattcaat |
56165201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 44262891 - 44262785
Alignment:
| Q |
1 |
tggtgtaaaccaatatgctatt-aacctccaaagttccacttcttaattaaatctctttccttactatattgaacccaaaattctgctgcaagctctgtc |
99 |
Q |
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|||||||||||||||||||||| ||||||||||| ||| || |||| ||||| |||||||||||||||||||||||| ||||||||||||||||| |
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| T |
44262891 |
tggtgtaaaccaatatgctatttaacctccaaagctcctctccttag----atctccttccttactatattgaacccaaaactctgctgcaagctctgta |
44262796 |
T |
|
| Q |
100 |
aatcacttaac |
110 |
Q |
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|||| |||||| |
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| T |
44262795 |
aatcgcttaac |
44262785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 61 - 95
Target Start/End: Complemental strand, 44259687 - 44259653
Alignment:
| Q |
61 |
ttactatattgaacccaaaattctgctgcaagctc |
95 |
Q |
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|||| |||||||||||||||||||||||||||||| |
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| T |
44259687 |
ttacgatattgaacccaaaattctgctgcaagctc |
44259653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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