View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8053_low_15 (Length: 209)

Name: NF8053_low_15
Description: NF8053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8053_low_15
NF8053_low_15
[»] chr7 (3 HSPs)
chr7 (53-190)||(42745378-42745515)
chr7 (13-55)||(42745303-42745345)
chr7 (131-187)||(42738008-42738064)


Alignment Details
Target: chr7 (Bit Score: 138; Significance: 2e-72; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 138; E-Value: 2e-72
Query Start/End: Original strand, 53 - 190
Target Start/End: Original strand, 42745378 - 42745515
Alignment:
Q  53 atgtattagtgaagtatgaggagaaatattatccttaatccaaataatgtataatattcaatttcttcatccttgtagtaggtcttgataatattgcgag 152  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42745378 atgtattagtgaagtatgaggagaaatattatccttaatccaaataatgtataatattcaatttcttcatccttgtagtaggtcttgataatattgcgag 42745477  T
Q  153 atccaacttgttatgatctttacttcttgtttccttac 190  Q
    ||||||||||||||||||||||||||||||||||||||    
T  42745478 atccaacttgttatgatctttacttcttgtttccttac 42745515  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 42745303 - 42745345
Alignment:
Q  13 agcagagaccaattatcatcagaatggtttattcacacagatg 55  Q
    |||| ||||||||||||||||||||||||||||||||||||||    
T  42745303 agcaaagaccaattatcatcagaatggtttattcacacagatg 42745345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 131 - 187
Target Start/End: Original strand, 42738008 - 42738064
Alignment:
Q  131 taggtcttgataatattgcgagatccaacttgttatgatctttacttcttgtttcct 187  Q
    |||||||||||  ||||| ||||||||||||   || ||||||||||||||||||||    
T  42738008 taggtcttgatggtattgggagatccaactttcaataatctttacttcttgtttcct 42738064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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