View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8053_low_16 (Length: 207)
Name: NF8053_low_16
Description: NF8053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8053_low_16 |
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Alignment Details
Target: chr4 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 20 - 178
Target Start/End: Original strand, 12698948 - 12699106
Alignment:
| Q |
20 |
taagtagtggaactagctaatgatgtggcaaccctaccagaatgggagctacctcatttgtttgtcgtctatagaactcgcccttcgagtttgtaaattg |
119 |
Q |
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| T |
12698948 |
taagtagtggaactagctaatgatgtggcaaccctaccagaatgtgagctacctcatttgtttgtcgtctatagaactcgcccttggagtttgtaaattg |
12699047 |
T |
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| Q |
120 |
tgaagtgaacaaatgtcgacacacggatctaatttgactatcttcgtaacatcaacctg |
178 |
Q |
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| T |
12699048 |
tgaagtgaacaaatgtcgacacacggatctaatttgactatctccgtaacatcaacctg |
12699106 |
T |
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Target: chr5 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 53
Target Start/End: Complemental strand, 8274774 - 8274741
Alignment:
| Q |
20 |
taagtagtggaactagctaatgatgtggcaaccc |
53 |
Q |
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| T |
8274774 |
taagtagtggaactagctaataatgtggcaaccc |
8274741 |
T |
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