View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8053_low_2 (Length: 524)
Name: NF8053_low_2
Description: NF8053
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8053_low_2 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 440; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 440; E-Value: 0
Query Start/End: Original strand, 25 - 505
Target Start/End: Complemental strand, 40615420 - 40614945
Alignment:
| Q |
25 |
ttgacaaaacatcttgatatgataaattgcgggtaattttagttcaaattaatgttatctttagttagcactttcagatcggtccctaaagttgaaaccc |
124 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
40615420 |
ttgacaaaacatcttgatatgataaattgcgggtaattttagttcaaat----gttatctttagttagcactttcagattggtccctaaagttgaaaccc |
40615325 |
T |
|
| Q |
125 |
taaaatcagatggatccgtaaaataaataaatacccaaacaattcagtctctgaaatgtagagcaacatcaagttagtcatatagattatcaatatattc |
224 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40615324 |
taaaatcagatggatccgtaaaataaataaatacccaaacaattcagtctctgaaatgtagagcaacatcaagttagtcatatagattatcaatatattc |
40615225 |
T |
|
| Q |
225 |
aaaaatatgattattatcaaatagacaaataaatatttacctagggttgtcagtacaagagaaacgagtaatgtcaacctcgtcaataagaatatttaca |
324 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40615224 |
aaaaatatgattattatcaaatagacaaataaatatttatctagggttgtcagtacaagagaaacgagtaatgtcaacctcgtcaataagaatatttaca |
40615125 |
T |
|
| Q |
325 |
tccttagcacgttgaacaaaagcatctctaacacgatcagaataccaagaatgacttataaaaagcatcaacggactagatttagcaacaacggattcga |
424 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
40615124 |
tccttagcacgttgaacaaaagcatctctaactcgatcagaataccaagaatgacttataaaaagcatcaacggactagatttagcaacaacgga-tcga |
40615026 |
T |
|
| Q |
425 |
gaacctcattagcaatagaatgaagaatcttatcgtattcaagaatcaagaccaagattctgaacaatagtaggaagacat |
505 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40615025 |
gaacctcattagcaatagaatgaagaatcttatcatattcaagaatcaagaccaagattctgaacaatagtaggaagacat |
40614945 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 282 - 503
Target Start/End: Complemental strand, 40611227 - 40611013
Alignment:
| Q |
282 |
agagaaacgagtaatgtcaacctcgtcaataagaatatttacatccttagcacgttgaacaaaagcatctctaacacgatcagaataccaagaatgactt |
381 |
Q |
| |
|
||||||| ||||||| |||| |||||||||||||||||||| ||||||||||||| |||||||||||| ||||||| |||||| |||||||||||||| |
|
|
| T |
40611227 |
agagaaatgagtaatatcaatctcgtcaataagaatatttaaatccttagcacgtccaacaaaagcatccttaacacgttcagaaaaccaagaatgactt |
40611128 |
T |
|
| Q |
382 |
ataaaaagcatcaacggactagatttagcaacaacggattcgagaacctcattagcaatagaatgaagaatcttatcgtattcaagaatcaagaccaaga |
481 |
Q |
| |
|
|||||||||| || |||| ||||||||||||| |||||||||||||||||||||||| ||| ||||||||| || ||| |||||||||||| |
|
|
| T |
40611127 |
ctaaaaagcattaaaagactcgatttagcaacaatagattcgagaacctcattagcaataaaattaagaatcttgtcatat-------tcaagaccaaga |
40611035 |
T |
|
| Q |
482 |
ttctgaacaatagtaggaagac |
503 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
40611034 |
ttctgaacaatagtaggaagac |
40611013 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 148 - 249
Target Start/End: Complemental strand, 40612914 - 40612811
Alignment:
| Q |
148 |
taaataaatacccaaacaattcagtctctgaaatgta--gagcaacatcaagttagtcatatagattatcaatatattcaaaaatatgattattatcaaa |
245 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||| |||||| |||| ||| |
|
|
| T |
40612914 |
taaataaatacccacccaattcagtctctgaaatgtatagagcaacatcaagttagtcatatagattatcaatatatttcaaaaaatgatttttataaaa |
40612815 |
T |
|
| Q |
246 |
taga |
249 |
Q |
| |
|
|||| |
|
|
| T |
40612814 |
taga |
40612811 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 470 - 503
Target Start/End: Original strand, 1385032 - 1385065
Alignment:
| Q |
470 |
tcaagaccaagattctgaacaatagtaggaagac |
503 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |
|
|
| T |
1385032 |
tcaagaccgagattctgaacaatagtaggaagac |
1385065 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University